Wall clock time and date at job start Tue Mar 31 2020 10:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46903 * 2 1 4 4 C 1.52996 * 109.47383 * 240.00076 * 2 1 3 5 5 C 1.50698 * 109.46931 * 119.99328 * 2 1 3 6 6 C 1.37753 * 119.95650 * 0.02562 * 5 2 1 7 7 C 1.39731 * 119.90876 * 179.97438 * 6 5 2 8 8 C 1.43199 * 120.09479 * 180.02562 * 7 6 5 9 9 N 5.95655 * 74.50979 * 120.01245 * 2 1 3 10 10 C 1.39779 * 119.81066 * 359.97438 * 7 6 5 11 11 C 1.37708 * 119.90295 * 0.02562 * 10 7 6 12 12 C 1.38946 * 119.95123 * 180.02562 * 5 2 1 13 13 O 1.35753 * 119.90633 * 0.04860 * 12 5 2 14 14 C 1.42900 * 117.00024 * 174.45520 * 13 12 5 15 15 H 1.08995 * 110.63933 * 326.87042 * 14 13 12 16 16 C 1.55163 * 110.72061 * 203.73010 * 14 13 12 17 17 C 1.54902 * 101.58107 * 206.13706 * 16 14 13 18 18 N 1.47416 * 104.83465 * 37.00596 * 17 16 14 19 19 C 1.36938 * 125.64719 * 155.90340 * 18 17 16 20 20 H 1.07999 * 120.00052 * 179.97438 * 19 18 17 21 21 C 1.38820 * 120.00106 * 359.97438 * 19 18 17 22 22 N 1.31618 * 119.99585 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99923 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47123 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47251 * 120.00081 * 23 21 19 26 26 H 1.48510 * 109.46774 * 239.99866 * 23 21 19 27 27 C 1.47020 * 108.70705 * 335.87388 * 18 17 16 28 28 H 1.08998 * 109.47537 * 299.99998 * 1 2 3 29 29 H 1.08998 * 109.47231 * 60.00519 * 1 2 3 30 30 H 1.09007 * 109.46595 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47527 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47224 * 300.00002 * 3 2 1 33 33 H 1.09005 * 109.47396 * 59.99636 * 3 2 1 34 34 H 1.08998 * 109.46995 * 299.99623 * 4 2 1 35 35 H 1.09000 * 109.47302 * 60.00297 * 4 2 1 36 36 H 1.09004 * 109.46964 * 180.02562 * 4 2 1 37 37 H 1.08005 * 120.04273 * 0.24928 * 6 5 2 38 38 H 1.07996 * 120.04831 * 180.02562 * 10 7 6 39 39 H 1.08002 * 119.95263 * 180.02562 * 11 10 7 40 40 H 1.09000 * 111.00355 * 324.21051 * 16 14 13 41 41 H 1.09001 * 111.00453 * 88.01916 * 16 14 13 42 42 H 1.09002 * 110.36649 * 155.85258 * 17 16 14 43 43 H 1.09004 * 110.36407 * 278.16873 * 17 16 14 44 44 H 0.97006 * 119.99486 * 179.97438 * 22 21 19 45 45 H 1.08996 * 109.88276 * 241.64326 * 27 18 17 46 46 H 1.09004 * 109.88418 * 120.47344 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0323 -0.7103 1.2305 6 6 1.1363 -1.2338 2.1365 7 6 1.6031 -1.8926 3.2769 8 6 0.6752 -2.4388 4.2210 9 7 -0.0608 -2.8712 4.9705 10 6 2.9784 -2.0180 3.4929 11 6 3.8672 -1.4917 2.5822 12 6 3.3986 -0.8362 1.4497 13 8 4.2782 -0.3179 0.5550 14 6 5.6638 -0.3745 0.9000 15 1 5.7957 -0.2752 1.9774 16 6 6.4625 0.7212 0.1458 17 6 7.8777 0.0935 0.0929 18 7 7.6440 -1.3477 -0.1108 19 6 8.5308 -2.2288 -0.6697 20 1 8.2638 -3.2700 -0.7749 21 6 9.7729 -1.7838 -1.1010 22 7 10.0981 -0.5149 -0.9732 23 14 10.9829 -2.9860 -1.8628 24 1 10.3807 -4.3431 -1.8914 25 1 11.3021 -2.5563 -3.2479 26 1 12.2281 -3.0144 -1.0539 27 6 6.3014 -1.6825 0.3862 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6768 -1.7489 -1.2492 35 1 1.6768 -0.2074 -2.1392 36 1 3.1301 -0.7216 -1.2489 37 1 0.0744 -1.1390 1.9633 38 1 3.3434 -2.5268 4.3728 39 1 4.9300 -1.5884 2.7481 40 1 6.0650 0.8735 -0.8576 41 1 6.4696 1.6556 0.7069 42 1 8.4454 0.5074 -0.7405 43 1 8.4034 0.2635 1.0325 44 1 10.9663 -0.2040 -1.2742 45 1 6.3767 -2.4031 1.2006 46 1 5.6990 -2.0958 -0.4228 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228996710.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:14 Heat of formation + Delta-G solvation = 35.350288 kcal Electronic energy + Delta-G solvation = -26422.802831 eV Core-core repulsion = 22892.446155 eV Total energy + Delta-G solvation = -3530.356676 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.83273 -38.53888 -37.14205 -36.30946 -35.74980 -32.42325 -30.78646 -30.17813 -29.24890 -27.88592 -27.17946 -27.14131 -24.73504 -23.46884 -23.10074 -20.81012 -20.36009 -19.75008 -18.04822 -17.90988 -17.10999 -16.14943 -15.43635 -14.95814 -14.83935 -14.71228 -14.33396 -14.16772 -13.94535 -13.88665 -13.74335 -13.55037 -13.08366 -12.71189 -12.59984 -12.45465 -12.26617 -12.09415 -11.93348 -11.82813 -11.71049 -11.61500 -11.49855 -11.08059 -10.95821 -10.89920 -10.82940 -10.71050 -10.36393 -10.28667 -10.09490 -9.90258 -9.69866 -9.09817 -8.75665 -8.17172 -6.96449 -5.75769 -3.18179 0.75514 1.14458 2.56835 2.83689 3.22273 3.34928 3.41098 3.43193 3.73103 3.81635 4.39884 4.41945 4.63585 4.83841 4.84893 4.95992 5.01726 5.15388 5.18403 5.28008 5.37910 5.42736 5.48864 5.52959 5.63709 5.65228 5.71847 5.79064 5.81519 5.87686 5.96566 6.00807 6.07474 6.14602 6.19217 6.24378 6.30315 6.34884 6.39216 6.41521 6.49540 6.53212 6.68658 7.34228 7.39102 7.49530 7.52832 7.73009 8.23645 9.10925 9.71283 10.33323 11.28553 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.017064 B = 0.003380 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.523470 B = 8281.104202 C = 9138.348950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.015 4.015 3 C -0.143 4.143 4 C -0.144 4.144 5 C -0.112 4.112 6 C -0.036 4.036 7 C -0.084 4.084 8 C 0.266 3.734 9 N -0.437 5.437 10 C -0.030 4.030 11 C -0.211 4.211 12 C 0.181 3.819 13 O -0.287 6.287 14 C 0.063 3.937 15 H 0.080 0.920 16 C -0.135 4.135 17 C 0.152 3.848 18 N -0.600 5.600 19 C -0.224 4.224 20 H 0.079 0.921 21 C -0.009 4.009 22 N -0.922 5.922 23 Si 0.916 3.084 24 H -0.279 1.279 25 H -0.289 1.289 26 H -0.290 1.290 27 C 0.120 3.880 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.055 0.945 33 H 0.050 0.950 34 H 0.051 0.949 35 H 0.055 0.945 36 H 0.076 0.924 37 H 0.139 0.861 38 H 0.132 0.868 39 H 0.144 0.856 40 H 0.074 0.926 41 H 0.067 0.933 42 H 0.114 0.886 43 H 0.016 0.984 44 H 0.253 0.747 45 H 0.026 0.974 46 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.222 3.642 3.538 16.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.015 4.015 3 C -0.200 4.200 4 C -0.201 4.201 5 C -0.113 4.113 6 C -0.056 4.056 7 C -0.088 4.088 8 C -0.048 4.048 9 N -0.113 5.113 10 C -0.050 4.050 11 C -0.229 4.229 12 C 0.132 3.868 13 O -0.198 6.198 14 C 0.007 3.993 15 H 0.098 0.902 16 C -0.173 4.173 17 C 0.027 3.973 18 N -0.328 5.328 19 C -0.352 4.352 20 H 0.097 0.903 21 C -0.205 4.205 22 N -0.570 5.570 23 Si 0.746 3.254 24 H -0.205 1.205 25 H -0.216 1.216 26 H -0.217 1.217 27 C -0.006 4.006 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.093 0.907 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.095 0.905 37 H 0.156 0.844 38 H 0.150 0.850 39 H 0.161 0.839 40 H 0.093 0.907 41 H 0.085 0.915 42 H 0.132 0.868 43 H 0.034 0.966 44 H 0.064 0.936 45 H 0.044 0.956 46 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -17.169 3.056 4.406 17.986 hybrid contribution 1.104 -0.643 -0.313 1.315 sum -16.065 2.413 4.093 16.753 Atomic orbital electron populations 1.22019 0.94580 1.01814 1.01985 1.19306 0.94857 0.95294 0.92022 1.21920 1.02968 0.93935 1.01177 1.21930 1.03109 0.99476 0.95560 1.19118 0.89689 1.03987 0.98518 1.20937 0.99963 0.93775 0.90928 1.15836 0.90368 1.07568 0.94996 1.25706 0.93120 0.93021 0.92991 1.81236 1.09545 1.10273 1.10227 1.20913 0.90572 0.95377 0.98150 1.21346 1.01317 1.04319 0.95943 1.19184 0.89599 0.89980 0.88011 1.86221 1.17197 1.74098 1.42284 1.23830 0.76879 0.99023 0.99588 0.90174 1.23210 0.98100 0.95974 1.00040 1.22001 0.89963 0.83427 1.01881 1.44368 1.11799 1.05516 1.71087 1.19118 0.93942 0.90316 1.31850 0.90298 1.24795 0.97667 0.96568 1.01440 1.69759 1.21629 1.12988 1.52671 0.85979 0.80937 0.79819 0.78642 1.20459 1.21629 1.21676 1.21682 0.88658 0.93405 0.96898 0.92414 0.92176 0.92372 0.90675 0.92603 0.93076 0.92985 0.92623 0.90535 0.84362 0.84987 0.83860 0.90706 0.91476 0.86844 0.96561 0.93611 0.95588 0.94590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 7.13 37.16 0.26 -0.89 16 2 C -0.01 -0.15 0.75 -155.66 -0.12 -0.26 16 3 C -0.14 -1.43 8.26 37.16 0.31 -1.13 16 4 C -0.14 -1.56 8.26 37.16 0.31 -1.25 16 5 C -0.11 -1.22 4.76 -104.54 -0.50 -1.71 16 6 C -0.04 -0.35 8.68 -39.20 -0.34 -0.69 16 7 C -0.08 -0.87 5.74 -106.84 -0.61 -1.48 16 8 C 0.27 3.10 15.33 -22.47 -0.34 2.76 16 9 N -0.44 -5.98 18.54 41.84 0.78 -5.20 16 10 C -0.03 -0.30 9.75 -39.20 -0.38 -0.68 16 11 C -0.21 -2.42 8.87 -39.50 -0.35 -2.77 16 12 C 0.18 2.22 6.28 -39.04 -0.25 1.98 16 13 O -0.29 -3.99 5.50 -18.97 -0.10 -4.09 16 14 C 0.06 0.98 2.74 -24.89 -0.07 0.92 16 15 H 0.08 1.15 6.26 -51.93 -0.32 0.82 16 16 C -0.13 -2.31 6.81 -24.58 -0.17 -2.48 16 17 C 0.15 3.41 5.89 -2.54 -0.01 3.40 16 18 N -0.60 -14.50 3.39 -170.08 -0.58 -15.07 16 19 C -0.22 -5.99 10.27 -15.06 -0.15 -6.15 16 20 H 0.08 2.06 7.83 -52.49 -0.41 1.64 16 21 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 22 N -0.92 -25.71 10.09 55.49 0.56 -25.15 16 23 Si 0.92 21.35 29.55 -169.99 -5.02 16.33 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 25 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 26 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 27 C 0.12 2.32 6.79 -3.07 -0.02 2.30 16 28 H 0.06 0.42 7.51 -51.93 -0.39 0.03 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.43 7.51 -51.92 -0.39 0.04 16 31 H 0.07 0.88 6.12 -51.93 -0.32 0.56 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.08 1.00 6.13 -51.93 -0.32 0.68 16 37 H 0.14 1.11 5.88 -52.48 -0.31 0.81 16 38 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 39 H 0.14 1.66 5.58 -52.49 -0.29 1.36 16 40 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 41 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.11 2.90 5.87 -51.93 -0.30 2.60 16 43 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 44 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 45 H 0.03 0.49 7.78 -51.93 -0.40 0.09 16 46 H 0.04 0.72 8.06 -51.93 -0.42 0.30 16 LS Contribution 366.21 15.07 5.52 5.52 Total: -1.00 -28.76 366.21 -8.21 -36.97 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -6.82 Total: -0.81 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: -2.53 Total: -8.49 kcal Atomic # 7 Polarization: -46.18 SS G_CDS: 0.76 Total: -45.42 kcal Atomic # 8 Polarization: -3.99 SS G_CDS: -0.10 Total: -4.09 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -28.76 -8.21 -36.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228996710.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.317 kcal (2) G-P(sol) polarization free energy of solvation -28.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds