Wall clock time and date at job start Tue Mar 31 2020 10:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46903 * 2 1 4 4 C 1.52996 * 109.47383 * 240.00076 * 2 1 3 5 5 C 1.50698 * 109.46931 * 119.99328 * 2 1 3 6 6 C 1.37753 * 119.95650 * 0.02562 * 5 2 1 7 7 C 1.39731 * 119.90876 * 179.97438 * 6 5 2 8 8 C 1.43199 * 120.09479 * 180.02562 * 7 6 5 9 9 N 5.95655 * 74.50979 * 120.01245 * 2 1 3 10 10 C 1.39779 * 119.81066 * 359.97438 * 7 6 5 11 11 C 1.37708 * 119.90295 * 0.02562 * 10 7 6 12 12 C 1.38946 * 119.95123 * 180.02562 * 5 2 1 13 13 O 1.35753 * 119.90633 * 0.04860 * 12 5 2 14 14 C 1.42900 * 117.00024 * 174.45520 * 13 12 5 15 15 H 1.08995 * 110.63933 * 326.87042 * 14 13 12 16 16 C 1.55163 * 110.72061 * 203.73010 * 14 13 12 17 17 C 1.54902 * 101.58107 * 206.13706 * 16 14 13 18 18 N 1.47416 * 104.83465 * 37.00596 * 17 16 14 19 19 C 1.36938 * 125.64719 * 155.90340 * 18 17 16 20 20 H 1.07999 * 120.00052 * 179.97438 * 19 18 17 21 21 C 1.38820 * 120.00106 * 359.97438 * 19 18 17 22 22 N 1.31618 * 119.99585 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99923 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47123 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47251 * 120.00081 * 23 21 19 26 26 H 1.48510 * 109.46774 * 239.99866 * 23 21 19 27 27 C 1.47020 * 108.70705 * 335.87388 * 18 17 16 28 28 H 1.08998 * 109.47537 * 299.99998 * 1 2 3 29 29 H 1.08998 * 109.47231 * 60.00519 * 1 2 3 30 30 H 1.09007 * 109.46595 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47527 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47224 * 300.00002 * 3 2 1 33 33 H 1.09005 * 109.47396 * 59.99636 * 3 2 1 34 34 H 1.08998 * 109.46995 * 299.99623 * 4 2 1 35 35 H 1.09000 * 109.47302 * 60.00297 * 4 2 1 36 36 H 1.09004 * 109.46964 * 180.02562 * 4 2 1 37 37 H 1.08005 * 120.04273 * 0.24928 * 6 5 2 38 38 H 1.07996 * 120.04831 * 180.02562 * 10 7 6 39 39 H 1.08002 * 119.95263 * 180.02562 * 11 10 7 40 40 H 1.09000 * 111.00355 * 324.21051 * 16 14 13 41 41 H 1.09001 * 111.00453 * 88.01916 * 16 14 13 42 42 H 1.09002 * 110.36649 * 155.85258 * 17 16 14 43 43 H 1.09004 * 110.36407 * 278.16873 * 17 16 14 44 44 H 0.97006 * 119.99486 * 179.97438 * 22 21 19 45 45 H 1.08996 * 109.88276 * 241.64326 * 27 18 17 46 46 H 1.09004 * 109.88418 * 120.47344 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0323 -0.7103 1.2305 6 6 1.1363 -1.2338 2.1365 7 6 1.6031 -1.8926 3.2769 8 6 0.6752 -2.4388 4.2210 9 7 -0.0608 -2.8712 4.9705 10 6 2.9784 -2.0180 3.4929 11 6 3.8672 -1.4917 2.5822 12 6 3.3986 -0.8362 1.4497 13 8 4.2782 -0.3179 0.5550 14 6 5.6638 -0.3745 0.9000 15 1 5.7957 -0.2752 1.9774 16 6 6.4625 0.7212 0.1458 17 6 7.8777 0.0935 0.0929 18 7 7.6440 -1.3477 -0.1108 19 6 8.5308 -2.2288 -0.6697 20 1 8.2638 -3.2700 -0.7749 21 6 9.7729 -1.7838 -1.1010 22 7 10.0981 -0.5149 -0.9732 23 14 10.9829 -2.9860 -1.8628 24 1 10.3807 -4.3431 -1.8914 25 1 11.3021 -2.5563 -3.2479 26 1 12.2281 -3.0144 -1.0539 27 6 6.3014 -1.6825 0.3862 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 1.6768 -1.7489 -1.2492 35 1 1.6768 -0.2074 -2.1392 36 1 3.1301 -0.7216 -1.2489 37 1 0.0744 -1.1390 1.9633 38 1 3.3434 -2.5268 4.3728 39 1 4.9300 -1.5884 2.7481 40 1 6.0650 0.8735 -0.8576 41 1 6.4696 1.6556 0.7069 42 1 8.4454 0.5074 -0.7405 43 1 8.4034 0.2635 1.0325 44 1 10.9663 -0.2040 -1.2742 45 1 6.3767 -2.4031 1.2006 46 1 5.6990 -2.0958 -0.4228 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228996710.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:29:12 Heat of formation + Delta-G solvation = 22.435047 kcal Electronic energy + Delta-G solvation = -26423.362877 eV Core-core repulsion = 22892.446155 eV Total energy + Delta-G solvation = -3530.916723 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 1.64 seconds Orbital eigenvalues (eV) -41.78708 -39.71440 -38.14693 -37.61477 -36.69869 -34.27430 -31.72350 -31.34300 -30.69921 -29.16296 -28.13866 -27.96822 -26.51980 -24.39098 -24.09322 -22.13200 -21.96383 -20.73262 -19.15086 -18.95805 -18.72654 -17.19801 -16.84702 -16.58667 -15.75042 -15.70485 -15.60998 -15.26329 -14.99661 -14.79109 -14.74608 -14.66319 -14.27432 -14.24212 -13.69220 -13.61740 -13.43749 -13.26756 -13.02706 -12.90055 -12.80704 -12.72305 -12.65590 -12.46689 -12.36954 -12.21130 -11.98535 -11.82628 -11.71869 -11.61503 -11.53246 -11.39456 -11.16158 -10.75889 -9.92417 -9.12772 -8.90491 -7.78639 -5.23054 -0.13287 0.32011 1.48679 1.49028 1.59174 1.64441 1.92178 2.11746 2.50744 2.86194 2.91208 3.32889 3.58034 3.67608 3.70838 3.83945 3.98009 4.07132 4.09033 4.11603 4.24025 4.27030 4.48273 4.56640 4.64378 4.77343 4.83563 4.89892 4.91725 4.93732 4.96952 5.02946 5.05142 5.08507 5.15583 5.20008 5.23116 5.31331 5.38599 5.46486 5.47908 5.57410 5.59597 5.61944 5.77875 5.79370 6.29624 6.42507 6.49788 7.10044 7.75894 8.37555 9.23347 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.017064 B = 0.003380 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.523470 B = 8281.104202 C = 9138.348950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.015 4.015 3 C -0.141 4.141 4 C -0.142 4.142 5 C -0.113 4.113 6 C -0.026 4.026 7 C -0.082 4.082 8 C 0.288 3.712 9 N -0.472 5.472 10 C -0.024 4.024 11 C -0.216 4.216 12 C 0.161 3.839 13 O -0.288 6.288 14 C 0.083 3.917 15 H 0.100 0.900 16 C -0.120 4.120 17 C 0.154 3.846 18 N -0.623 5.623 19 C -0.239 4.239 20 H 0.079 0.921 21 C -0.062 4.062 22 N -0.946 5.946 23 Si 0.978 3.022 24 H -0.269 1.269 25 H -0.291 1.291 26 H -0.292 1.292 27 C 0.118 3.882 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.051 0.949 35 H 0.064 0.936 36 H 0.050 0.950 37 H 0.160 0.840 38 H 0.151 0.849 39 H 0.142 0.858 40 H 0.070 0.930 41 H 0.096 0.904 42 H 0.079 0.921 43 H -0.001 1.001 44 H 0.248 0.752 45 H 0.033 0.967 46 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.216 3.530 4.130 19.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.015 4.015 3 C -0.198 4.198 4 C -0.199 4.199 5 C -0.114 4.114 6 C -0.046 4.046 7 C -0.086 4.086 8 C -0.026 4.026 9 N -0.148 5.148 10 C -0.044 4.044 11 C -0.235 4.235 12 C 0.114 3.886 13 O -0.199 6.199 14 C 0.027 3.973 15 H 0.118 0.882 16 C -0.158 4.158 17 C 0.029 3.971 18 N -0.350 5.350 19 C -0.368 4.368 20 H 0.097 0.903 21 C -0.255 4.255 22 N -0.596 5.596 23 Si 0.806 3.194 24 H -0.193 1.193 25 H -0.218 1.218 26 H -0.219 1.219 27 C -0.007 4.007 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.069 0.931 37 H 0.177 0.823 38 H 0.168 0.832 39 H 0.159 0.841 40 H 0.089 0.911 41 H 0.115 0.885 42 H 0.097 0.903 43 H 0.017 0.983 44 H 0.058 0.942 45 H 0.051 0.949 46 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -19.202 2.935 5.010 20.061 hybrid contribution 1.648 -0.634 -0.487 1.831 sum -17.555 2.301 4.524 18.273 Atomic orbital electron populations 1.22008 0.92681 1.02546 1.02961 1.19336 0.96349 0.94830 0.90978 1.21896 1.01718 0.94259 1.01951 1.21899 1.01399 0.99889 0.96702 1.19264 0.89134 1.03972 0.99049 1.21134 1.00877 0.92551 0.90062 1.15870 0.90209 1.07557 0.94922 1.25736 0.92452 0.92094 0.92345 1.81270 1.10694 1.11510 1.11351 1.21078 0.90301 0.94693 0.98343 1.21363 1.01473 1.04630 0.96041 1.19435 0.89932 0.90945 0.88290 1.86227 1.16123 1.74649 1.42922 1.23447 0.77861 0.95958 1.00081 0.88234 1.22975 0.94860 0.97240 1.00748 1.21765 0.92739 0.83192 0.99421 1.44645 1.13161 1.06019 1.71192 1.19441 0.94720 0.90918 1.31678 0.90301 1.25578 0.99372 0.98154 1.02413 1.70004 1.21608 1.14374 1.53586 0.85020 0.78594 0.78396 0.77370 1.19308 1.21804 1.21861 1.21806 0.86645 0.95667 0.96628 0.91345 0.91405 0.91751 0.92566 0.91782 0.92365 0.92945 0.91725 0.93083 0.82257 0.83161 0.84065 0.91119 0.88549 0.90321 0.98317 0.94180 0.94892 0.95487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 7.13 71.98 0.51 -1.31 16 2 C -0.01 -0.26 0.75 -52.93 -0.04 -0.30 16 3 C -0.14 -2.55 8.26 71.98 0.59 -1.96 16 4 C -0.14 -2.89 8.26 71.98 0.59 -2.29 16 5 C -0.11 -2.19 4.76 -19.81 -0.09 -2.29 16 6 C -0.03 -0.43 8.68 22.52 0.20 -0.24 16 7 C -0.08 -1.47 5.74 -21.30 -0.12 -1.59 16 8 C 0.29 6.01 15.33 88.33 1.35 7.37 16 9 N -0.47 -12.06 18.54 19.00 0.35 -11.71 16 10 C -0.02 -0.42 9.75 22.52 0.22 -0.20 16 11 C -0.22 -4.54 8.87 22.32 0.20 -4.34 16 12 C 0.16 3.69 6.28 22.62 0.14 3.83 16 13 O -0.29 -7.68 5.50 -90.79 -0.50 -8.18 16 14 C 0.08 2.52 2.74 31.78 0.09 2.61 16 15 H 0.10 2.67 6.26 -2.39 -0.01 2.66 16 16 C -0.12 -4.05 6.81 31.99 0.22 -3.84 16 17 C 0.15 7.08 5.89 86.85 0.51 7.59 16 18 N -0.62 -30.67 3.39 -692.02 -2.35 -33.01 16 19 C -0.24 -13.00 10.27 84.04 0.86 -12.14 16 20 H 0.08 4.16 7.83 -2.91 -0.02 4.14 16 21 C -0.06 -3.43 5.49 84.86 0.47 -2.97 16 22 N -0.95 -54.37 10.09 21.65 0.22 -54.15 16 23 Si 0.98 44.52 29.55 68.60 2.03 46.55 16 24 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 25 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 26 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 27 C 0.12 4.56 6.79 86.73 0.59 5.15 16 28 H 0.07 0.73 7.51 -2.39 -0.02 0.71 16 29 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.06 0.74 7.51 -2.38 -0.02 0.72 16 31 H 0.06 1.24 6.12 -2.39 -0.01 1.22 16 32 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 34 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.05 1.31 6.13 -2.39 -0.01 1.29 16 37 H 0.16 1.97 5.88 -2.91 -0.02 1.95 16 38 H 0.15 2.10 8.06 -2.91 -0.02 2.08 16 39 H 0.14 3.01 5.58 -2.91 -0.02 3.00 16 40 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 41 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 42 H 0.08 4.20 5.87 -2.39 -0.01 4.18 16 43 H 0.00 -0.06 8.14 -2.38 -0.02 -0.08 16 44 H 0.25 13.85 8.31 -92.70 -0.77 13.08 16 45 H 0.03 1.23 7.78 -2.39 -0.02 1.21 16 46 H 0.03 1.09 8.06 -2.38 -0.02 1.07 16 Total: -1.00 -63.20 366.21 7.02 -56.18 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: 0.98 Total: 11.23 kcal Atomic # 6 Polarization: -13.20 SS G_CDS: 6.29 Total: -6.91 kcal Atomic # 7 Polarization: -97.09 SS G_CDS: -1.78 Total: -98.87 kcal Atomic # 8 Polarization: -7.68 SS G_CDS: -0.50 Total: -8.18 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -63.20 7.02 -56.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228996710.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.617 kcal (2) G-P(sol) polarization free energy of solvation -63.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.64 seconds