Wall clock time and date at job start Tue Mar 31 2020 10:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46626 * 2 1 4 4 C 1.52999 * 109.46623 * 179.97438 * 3 2 1 5 5 C 1.53006 * 109.46997 * 179.97438 * 4 3 2 6 6 N 1.46896 * 109.47501 * 180.02562 * 5 4 3 7 7 C 1.47477 * 111.00134 * 91.52240 * 6 5 4 8 8 C 1.53510 * 87.93057 * 138.70672 * 7 6 5 9 9 C 1.47473 * 111.00157 * 187.49712 * 6 5 4 10 10 H 1.09003 * 113.47827 * 336.06057 * 9 6 5 11 11 C 1.53003 * 113.47671 * 106.52971 * 9 6 5 12 12 N 1.46500 * 109.46910 * 305.00041 * 11 9 6 13 13 C 1.46502 * 119.99907 * 270.00049 * 12 11 9 14 14 C 1.34772 * 120.00239 * 90.00084 * 12 11 9 15 15 O 1.21280 * 120.00049 * 359.97438 * 14 12 11 16 16 C 1.50697 * 120.00142 * 180.02562 * 14 12 11 17 17 S 1.81007 * 109.47347 * 180.02562 * 16 14 12 18 18 C 1.76194 * 100.00034 * 179.97438 * 17 16 14 19 19 H 1.08003 * 120.00362 * 359.97438 * 18 17 16 20 20 C 1.38803 * 119.99692 * 179.97438 * 18 17 16 21 21 N 1.31630 * 120.00165 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99777 * 180.02562 * 20 18 17 23 23 H 1.48492 * 109.47042 * 60.00166 * 22 20 18 24 24 H 1.48497 * 109.46942 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.47005 * 300.00168 * 22 20 18 26 26 H 1.09002 * 109.46719 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47839 * 299.99931 * 1 2 3 28 28 H 1.09000 * 109.47160 * 60.00369 * 1 2 3 29 29 H 1.08993 * 109.47839 * 240.00069 * 2 1 3 30 30 H 1.09000 * 109.47160 * 119.99631 * 2 1 3 31 31 H 1.09000 * 109.47050 * 299.99699 * 3 2 1 32 32 H 1.09001 * 109.46801 * 59.99811 * 3 2 1 33 33 H 1.09000 * 109.47486 * 299.99829 * 4 3 2 34 34 H 1.09001 * 109.47362 * 60.00551 * 4 3 2 35 35 H 1.09000 * 109.46866 * 300.00212 * 5 4 3 36 36 H 1.08996 * 109.47261 * 59.99820 * 5 4 3 37 37 H 1.09000 * 113.48095 * 253.47682 * 7 6 5 38 38 H 1.09001 * 113.47930 * 23.94350 * 7 6 5 39 39 H 1.09000 * 114.17170 * 87.62713 * 8 7 6 40 40 H 1.09002 * 114.16837 * 220.14141 * 8 7 6 41 41 H 1.09002 * 109.47264 * 64.99847 * 11 9 6 42 42 H 1.08996 * 109.47070 * 184.99996 * 11 9 6 43 43 H 1.08996 * 109.47466 * 90.00104 * 13 12 11 44 44 H 1.09002 * 109.47384 * 210.00344 * 13 12 11 45 45 H 1.09002 * 109.46861 * 329.99721 * 13 12 11 46 46 H 1.09000 * 109.47138 * 299.99363 * 16 14 12 47 47 H 1.08994 * 109.47497 * 59.99775 * 16 14 12 48 48 H 0.97001 * 119.99927 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0799 2.8852 0.0000 6 7 5.5488 2.8853 0.0000 7 6 6.0774 2.9213 -1.3763 8 6 7.1335 3.9213 -0.8852 9 6 6.0772 4.2504 0.1790 10 1 5.3797 5.0298 -0.1279 11 6 6.6684 4.4978 1.5684 12 7 5.6679 4.1764 2.5891 13 6 4.7479 5.2125 3.0649 14 6 5.5938 2.9276 3.0904 15 8 6.3551 2.0697 2.6962 16 6 4.5642 2.5968 4.1399 17 16 4.7173 0.8549 4.6075 18 6 3.4344 0.7471 5.8104 19 1 2.8410 1.6180 6.0467 20 6 3.1863 -0.4572 6.4544 21 7 3.9097 -1.5186 6.1668 22 14 1.8257 -0.5717 7.7292 23 1 0.5261 -0.2279 7.0983 24 1 1.7653 -1.9550 8.2658 25 1 2.1044 0.3769 8.8372 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6765 1.9564 -0.8900 32 1 1.6764 1.9564 0.8900 33 1 3.9329 0.9289 0.8909 34 1 3.9336 0.9287 -0.8892 35 1 3.7168 3.3984 -0.8904 36 1 3.7161 3.3995 0.8895 37 1 6.4985 1.9711 -1.7048 38 1 5.3799 3.3460 -2.0984 39 1 8.0369 3.4577 -0.4890 40 1 7.3370 4.7339 -1.5826 41 1 7.5456 3.8660 1.7078 42 1 6.9568 5.5450 1.6593 43 1 3.8505 5.2135 2.4463 44 1 4.4752 5.0086 4.1004 45 1 5.2336 6.1863 3.0021 46 1 4.7253 3.2234 5.0171 47 1 3.5667 2.7799 3.7408 48 1 3.7366 -2.3601 6.6171 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230819087.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:37 Heat of formation + Delta-G solvation = -14.016295 kcal Electronic energy + Delta-G solvation = -25327.564389 eV Core-core repulsion = 21930.510968 eV Total energy + Delta-G solvation = -3397.053420 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.48450 -38.70742 -35.83608 -34.98260 -32.37435 -32.24902 -30.24732 -28.51317 -27.85058 -26.13063 -25.40563 -24.61781 -23.19247 -21.34485 -20.75433 -19.69534 -19.01483 -17.56523 -16.47233 -16.21682 -15.89741 -15.67018 -15.40041 -14.76041 -14.47736 -14.26728 -13.80183 -13.68225 -13.53369 -13.14547 -13.03362 -12.73985 -12.67327 -12.46935 -12.28551 -12.08425 -11.89705 -11.64878 -11.43845 -11.34468 -11.27538 -11.00875 -10.98297 -10.76905 -10.75541 -10.72241 -10.47482 -10.22887 -10.21416 -9.74866 -9.07699 -9.00791 -8.79693 -8.23230 -8.12984 -6.41415 -6.16153 -3.85082 3.06502 3.25661 3.29202 3.31746 3.35255 3.69343 4.02321 4.26055 4.42961 4.74351 4.90814 4.97090 5.07067 5.16571 5.17394 5.18684 5.22828 5.25565 5.27737 5.36085 5.45569 5.50845 5.51880 5.59200 5.65642 5.65973 5.72846 5.74711 5.79275 5.90239 5.96765 6.00598 6.02083 6.02979 6.11503 6.19897 6.22363 6.29446 6.41992 6.47639 6.59760 6.72059 6.85694 7.22516 7.63938 7.76130 8.40053 8.84888 9.29044 10.91034 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.010858 B = 0.004700 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2578.147361 B = 5956.351180 C = 7632.354336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C -0.114 4.114 4 C -0.112 4.112 5 C 0.027 3.973 6 N -0.438 5.438 7 C -0.005 4.005 8 C -0.137 4.137 9 C 0.009 3.991 10 H 0.071 0.929 11 C 0.137 3.863 12 N -0.624 5.624 13 C 0.082 3.918 14 C 0.535 3.465 15 O -0.491 6.491 16 C -0.149 4.149 17 S -0.056 6.056 18 C -0.535 4.535 19 H 0.069 0.931 20 C 0.075 3.925 21 N -0.867 5.867 22 Si 0.914 3.086 23 H -0.275 1.275 24 H -0.283 1.283 25 H -0.275 1.275 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.047 0.953 29 H 0.056 0.944 30 H 0.071 0.929 31 H 0.050 0.950 32 H 0.061 0.939 33 H 0.083 0.917 34 H 0.055 0.945 35 H 0.032 0.968 36 H 0.068 0.932 37 H 0.083 0.917 38 H 0.062 0.938 39 H 0.095 0.905 40 H 0.071 0.929 41 H 0.088 0.912 42 H 0.071 0.929 43 H 0.046 0.954 44 H 0.073 0.927 45 H 0.064 0.936 46 H 0.083 0.917 47 H 0.082 0.918 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.121 14.136 -14.659 20.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C -0.152 4.152 4 C -0.149 4.149 5 C -0.101 4.101 6 N -0.160 5.160 7 C -0.134 4.134 8 C -0.175 4.175 9 C -0.102 4.102 10 H 0.088 0.912 11 C 0.013 3.987 12 N -0.361 5.361 13 C -0.062 4.062 14 C 0.322 3.678 15 O -0.363 6.363 16 C -0.299 4.299 17 S 0.171 5.829 18 C -0.683 4.683 19 H 0.087 0.913 20 C -0.134 4.134 21 N -0.503 5.503 22 Si 0.741 3.259 23 H -0.200 1.200 24 H -0.208 1.208 25 H -0.200 1.200 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.066 0.934 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.069 0.931 32 H 0.079 0.921 33 H 0.101 0.899 34 H 0.074 0.926 35 H 0.050 0.950 36 H 0.087 0.913 37 H 0.101 0.899 38 H 0.080 0.920 39 H 0.114 0.886 40 H 0.090 0.910 41 H 0.107 0.893 42 H 0.090 0.910 43 H 0.065 0.935 44 H 0.091 0.909 45 H 0.083 0.917 46 H 0.101 0.899 47 H 0.100 0.900 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.197 12.098 -14.717 19.088 hybrid contribution -2.399 1.728 0.732 3.046 sum -1.202 13.826 -13.985 19.702 Atomic orbital electron populations 1.21760 0.96298 1.01385 1.01339 1.21516 0.95422 0.96911 1.02482 1.21530 0.95506 0.96972 1.01157 1.21467 0.94395 0.95736 1.03343 1.22655 0.89271 0.98129 1.00077 1.69062 1.08766 1.21629 1.16571 1.23784 0.97123 1.00262 0.92194 1.23156 0.97773 0.98981 0.97589 1.23804 0.97198 0.92710 0.96503 0.91157 1.21338 0.92022 1.00124 0.85180 1.47740 1.36249 1.10532 1.41601 1.21719 0.93181 0.91004 1.00261 1.20093 0.84703 0.81176 0.81869 1.90701 1.41493 1.45585 1.58507 1.23549 0.99931 1.07140 0.99327 1.85379 1.46950 0.99720 1.50838 1.22829 1.20389 0.99053 1.26019 0.91251 1.24949 0.96762 0.94750 0.96939 1.70010 1.38433 1.00774 1.41072 0.86293 0.81384 0.77378 0.80867 1.19998 1.20837 1.19996 0.92944 0.92668 0.93384 0.92493 0.90994 0.93078 0.92072 0.89851 0.92643 0.94977 0.91322 0.89861 0.92034 0.88600 0.91041 0.89348 0.91023 0.93524 0.90857 0.91698 0.89893 0.89958 0.92230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 9.91 37.16 0.37 -1.44 16 2 C -0.13 -1.71 5.93 -26.73 -0.16 -1.87 16 3 C -0.11 -1.51 5.21 -26.73 -0.14 -1.65 16 4 C -0.11 -1.66 5.53 -26.73 -0.15 -1.81 16 5 C 0.03 0.37 4.78 -3.82 -0.02 0.35 16 6 N -0.44 -6.14 4.93 -236.53 -1.17 -7.31 16 7 C 0.00 -0.05 7.70 -7.55 -0.06 -0.11 16 8 C -0.14 -1.33 8.00 -26.20 -0.21 -1.54 16 9 C 0.01 0.10 3.36 -71.44 -0.24 -0.14 16 10 H 0.07 0.72 7.91 -51.93 -0.41 0.30 16 11 C 0.14 1.67 5.63 -4.04 -0.02 1.65 16 12 N -0.62 -8.93 2.61 -181.57 -0.47 -9.40 16 13 C 0.08 0.89 10.29 59.85 0.62 1.50 16 14 C 0.53 10.27 7.18 -10.99 -0.08 10.19 16 15 O -0.49 -11.25 14.87 5.56 0.08 -11.17 16 16 C -0.15 -3.10 4.71 36.00 0.17 -2.93 16 17 S -0.06 -1.52 20.57 -107.50 -2.21 -3.73 16 18 C -0.53 -15.31 9.50 30.94 0.29 -15.02 16 19 H 0.07 1.89 7.80 -52.48 -0.41 1.48 16 20 C 0.08 2.16 5.49 -17.43 -0.10 2.06 16 21 N -0.87 -26.31 13.22 55.49 0.73 -25.57 16 22 Si 0.91 21.57 29.55 -169.99 -5.02 16.54 16 23 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 26 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 34 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.03 0.38 7.35 -51.93 -0.38 0.00 16 36 H 0.07 1.00 7.88 -51.93 -0.41 0.59 16 37 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.06 0.61 7.44 -51.93 -0.39 0.22 16 39 H 0.10 1.00 7.94 -51.93 -0.41 0.59 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.09 1.27 7.15 -51.93 -0.37 0.90 16 42 H 0.07 0.65 7.89 -51.93 -0.41 0.24 16 43 H 0.05 0.47 8.12 -51.93 -0.42 0.05 16 44 H 0.07 0.82 6.44 -51.93 -0.33 0.49 16 45 H 0.06 0.53 7.89 -51.93 -0.41 0.12 16 46 H 0.08 1.63 7.40 -51.92 -0.38 1.24 16 47 H 0.08 1.63 8.11 -51.92 -0.42 1.21 16 48 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 397.51 15.07 5.99 5.99 Total: -1.00 -33.63 397.51 -10.74 -44.37 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -8.95 Total: 1.03 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: 0.28 Total: -10.74 kcal Atomic # 7 Polarization: -41.38 SS G_CDS: -0.91 Total: -42.29 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.08 Total: -11.17 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: -1.52 SS G_CDS: -2.21 Total: -3.73 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.63 -10.74 -44.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230819087.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.349 kcal (2) G-P(sol) polarization free energy of solvation -33.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds