Wall clock time and date at job start Tue Mar 31 2020 10:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.46626 * 2 1 4 4 C 1.52999 * 109.46623 * 179.97438 * 3 2 1 5 5 C 1.53006 * 109.46997 * 179.97438 * 4 3 2 6 6 N 1.46896 * 109.47501 * 180.02562 * 5 4 3 7 7 C 1.47477 * 111.00134 * 91.52240 * 6 5 4 8 8 C 1.53510 * 87.93057 * 138.70672 * 7 6 5 9 9 C 1.47473 * 111.00157 * 187.49712 * 6 5 4 10 10 H 1.09003 * 113.47827 * 336.06057 * 9 6 5 11 11 C 1.53003 * 113.47671 * 106.52971 * 9 6 5 12 12 N 1.46500 * 109.46910 * 305.00041 * 11 9 6 13 13 C 1.46502 * 119.99907 * 270.00049 * 12 11 9 14 14 C 1.34772 * 120.00239 * 90.00084 * 12 11 9 15 15 O 1.21280 * 120.00049 * 359.97438 * 14 12 11 16 16 C 1.50697 * 120.00142 * 180.02562 * 14 12 11 17 17 S 1.81007 * 109.47347 * 180.02562 * 16 14 12 18 18 C 1.76194 * 100.00034 * 179.97438 * 17 16 14 19 19 H 1.08003 * 120.00362 * 359.97438 * 18 17 16 20 20 C 1.38803 * 119.99692 * 179.97438 * 18 17 16 21 21 N 1.31630 * 120.00165 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99777 * 180.02562 * 20 18 17 23 23 H 1.48492 * 109.47042 * 60.00166 * 22 20 18 24 24 H 1.48497 * 109.46942 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.47005 * 300.00168 * 22 20 18 26 26 H 1.09002 * 109.46719 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47839 * 299.99931 * 1 2 3 28 28 H 1.09000 * 109.47160 * 60.00369 * 1 2 3 29 29 H 1.08993 * 109.47839 * 240.00069 * 2 1 3 30 30 H 1.09000 * 109.47160 * 119.99631 * 2 1 3 31 31 H 1.09000 * 109.47050 * 299.99699 * 3 2 1 32 32 H 1.09001 * 109.46801 * 59.99811 * 3 2 1 33 33 H 1.09000 * 109.47486 * 299.99829 * 4 3 2 34 34 H 1.09001 * 109.47362 * 60.00551 * 4 3 2 35 35 H 1.09000 * 109.46866 * 300.00212 * 5 4 3 36 36 H 1.08996 * 109.47261 * 59.99820 * 5 4 3 37 37 H 1.09000 * 113.48095 * 253.47682 * 7 6 5 38 38 H 1.09001 * 113.47930 * 23.94350 * 7 6 5 39 39 H 1.09000 * 114.17170 * 87.62713 * 8 7 6 40 40 H 1.09002 * 114.16837 * 220.14141 * 8 7 6 41 41 H 1.09002 * 109.47264 * 64.99847 * 11 9 6 42 42 H 1.08996 * 109.47070 * 184.99996 * 11 9 6 43 43 H 1.08996 * 109.47466 * 90.00104 * 13 12 11 44 44 H 1.09002 * 109.47384 * 210.00344 * 13 12 11 45 45 H 1.09002 * 109.46861 * 329.99721 * 13 12 11 46 46 H 1.09000 * 109.47138 * 299.99363 * 16 14 12 47 47 H 1.08994 * 109.47497 * 59.99775 * 16 14 12 48 48 H 0.97001 * 119.99927 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 6 4.0799 2.8852 0.0000 6 7 5.5488 2.8853 0.0000 7 6 6.0774 2.9213 -1.3763 8 6 7.1335 3.9213 -0.8852 9 6 6.0772 4.2504 0.1790 10 1 5.3797 5.0298 -0.1279 11 6 6.6684 4.4978 1.5684 12 7 5.6679 4.1764 2.5891 13 6 4.7479 5.2125 3.0649 14 6 5.5938 2.9276 3.0904 15 8 6.3551 2.0697 2.6962 16 6 4.5642 2.5968 4.1399 17 16 4.7173 0.8549 4.6075 18 6 3.4344 0.7471 5.8104 19 1 2.8410 1.6180 6.0467 20 6 3.1863 -0.4572 6.4544 21 7 3.9097 -1.5186 6.1668 22 14 1.8257 -0.5717 7.7292 23 1 0.5261 -0.2279 7.0983 24 1 1.7653 -1.9550 8.2658 25 1 2.1044 0.3769 8.8372 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 1.6765 1.9564 -0.8900 32 1 1.6764 1.9564 0.8900 33 1 3.9329 0.9289 0.8909 34 1 3.9336 0.9287 -0.8892 35 1 3.7168 3.3984 -0.8904 36 1 3.7161 3.3995 0.8895 37 1 6.4985 1.9711 -1.7048 38 1 5.3799 3.3460 -2.0984 39 1 8.0369 3.4577 -0.4890 40 1 7.3370 4.7339 -1.5826 41 1 7.5456 3.8660 1.7078 42 1 6.9568 5.5450 1.6593 43 1 3.8505 5.2135 2.4463 44 1 4.4752 5.0086 4.1004 45 1 5.2336 6.1863 3.0021 46 1 4.7253 3.2234 5.0171 47 1 3.5667 2.7799 3.7408 48 1 3.7366 -2.3601 6.6171 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230819087.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:36 Heat of formation + Delta-G solvation = -35.235443 kcal Electronic energy + Delta-G solvation = -25328.484520 eV Core-core repulsion = 21930.510968 eV Total energy + Delta-G solvation = -3397.973552 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.49872 -40.04555 -36.95862 -36.27503 -34.57336 -33.29936 -31.60405 -29.61226 -28.99718 -27.66547 -27.13070 -25.62728 -24.21714 -22.41444 -21.89680 -20.75488 -20.33842 -19.45905 -17.87499 -17.34952 -17.02745 -16.87653 -16.80813 -16.56146 -15.87216 -15.69588 -15.21482 -14.78027 -14.60429 -14.49717 -14.23717 -14.12012 -13.99571 -13.55271 -13.40385 -13.19628 -13.12249 -13.03913 -12.88290 -12.77639 -12.57768 -12.42689 -12.33035 -12.26111 -11.86790 -11.78802 -11.71458 -11.49758 -11.33659 -11.24961 -11.12291 -10.62816 -10.22094 -9.78614 -9.33883 -8.62611 -8.33133 -6.09829 1.27737 1.41906 1.46348 1.57068 1.83802 2.22774 2.30527 3.00404 3.07975 3.32979 3.58482 3.84157 3.86028 3.88170 3.97885 4.16151 4.20370 4.23403 4.28682 4.36606 4.37165 4.39665 4.47650 4.51396 4.54066 4.60154 4.66952 4.71820 4.80582 4.81834 4.88515 4.93727 4.96411 5.00833 5.01690 5.08600 5.21911 5.28175 5.33700 5.39080 5.41073 5.49850 5.54788 5.79459 6.19925 6.28632 6.47473 7.07699 7.41271 8.75713 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.010858 B = 0.004700 C = 0.003668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2578.147361 B = 5956.351180 C = 7632.354336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.128 4.128 3 C -0.106 4.106 4 C -0.104 4.104 5 C 0.036 3.964 6 N -0.483 5.483 7 C -0.005 4.005 8 C -0.122 4.122 9 C 0.013 3.987 10 H 0.095 0.905 11 C 0.133 3.867 12 N -0.611 5.611 13 C 0.074 3.926 14 C 0.535 3.465 15 O -0.539 6.539 16 C -0.122 4.122 17 S -0.142 6.142 18 C -0.546 4.546 19 H 0.077 0.923 20 C 0.016 3.984 21 N -0.911 5.911 22 Si 0.993 3.007 23 H -0.263 1.263 24 H -0.278 1.278 25 H -0.261 1.261 26 H 0.055 0.945 27 H 0.047 0.953 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.034 0.966 31 H 0.080 0.920 32 H 0.049 0.951 33 H 0.028 0.972 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.068 0.932 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.104 0.896 41 H 0.059 0.941 42 H 0.114 0.886 43 H 0.059 0.941 44 H 0.067 0.933 45 H 0.103 0.897 46 H 0.097 0.903 47 H 0.092 0.908 48 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.655 17.564 -15.728 23.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.166 4.166 3 C -0.144 4.144 4 C -0.142 4.142 5 C -0.092 4.092 6 N -0.206 5.206 7 C -0.134 4.134 8 C -0.160 4.160 9 C -0.098 4.098 10 H 0.112 0.888 11 C 0.010 3.990 12 N -0.346 5.346 13 C -0.068 4.068 14 C 0.322 3.678 15 O -0.415 6.415 16 C -0.273 4.273 17 S 0.085 5.915 18 C -0.694 4.694 19 H 0.096 0.904 20 C -0.188 4.188 21 N -0.547 5.547 22 Si 0.815 3.185 23 H -0.187 1.187 24 H -0.203 1.203 25 H -0.186 1.186 26 H 0.074 0.926 27 H 0.066 0.934 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.053 0.947 31 H 0.098 0.902 32 H 0.068 0.932 33 H 0.047 0.953 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.123 0.877 41 H 0.078 0.922 42 H 0.132 0.868 43 H 0.078 0.922 44 H 0.085 0.915 45 H 0.122 0.878 46 H 0.115 0.885 47 H 0.110 0.890 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.340 15.590 -15.801 22.200 hybrid contribution -1.859 0.746 0.986 2.233 sum -2.199 16.336 -14.815 22.163 Atomic orbital electron populations 1.21732 0.94637 1.01936 1.02076 1.21522 0.96915 0.97007 1.01124 1.21475 0.94191 0.96790 1.01895 1.21356 0.95562 0.96712 1.00612 1.22536 0.89570 0.96615 1.00513 1.69072 1.08871 1.23946 1.18692 1.23838 0.97877 1.00273 0.91378 1.23069 0.96443 0.99198 0.97287 1.23866 0.97856 0.91946 0.96104 0.88752 1.21591 0.90461 1.01839 0.85130 1.47681 1.36622 1.09262 1.41016 1.22015 0.93392 0.91419 0.99997 1.19791 0.83828 0.82601 0.81603 1.90686 1.43178 1.47549 1.60087 1.23351 1.01301 1.01985 1.00666 1.85560 1.47767 1.06526 1.51651 1.23143 1.20467 0.99717 1.26066 0.90442 1.26067 0.99453 0.94093 0.99227 1.70183 1.40501 1.01493 1.42560 0.85084 0.77859 0.77759 0.77811 1.18725 1.20277 1.18600 0.92575 0.93374 0.91103 0.91552 0.94718 0.90164 0.93173 0.95342 0.92507 0.92440 0.92545 0.91359 0.89953 0.90067 0.87740 0.92212 0.86768 0.92237 0.91470 0.87832 0.88460 0.89011 0.92074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.42 9.91 71.98 0.71 -2.71 16 2 C -0.13 -3.58 5.93 30.60 0.18 -3.40 16 3 C -0.11 -2.81 5.21 30.60 0.16 -2.65 16 4 C -0.10 -3.23 5.53 30.60 0.17 -3.06 16 5 C 0.04 0.95 4.78 86.31 0.41 1.37 16 6 N -0.48 -13.28 4.93 -902.23 -4.45 -17.73 16 7 C 0.00 -0.10 7.70 83.57 0.64 0.54 16 8 C -0.12 -2.08 8.00 30.94 0.25 -1.83 16 9 C 0.01 0.25 3.36 42.19 0.14 0.39 16 10 H 0.09 1.47 7.91 -2.39 -0.02 1.45 16 11 C 0.13 2.95 5.63 86.38 0.49 3.44 16 12 N -0.61 -16.56 2.61 -846.76 -2.21 -18.77 16 13 C 0.07 1.36 10.29 127.77 1.31 2.67 16 14 C 0.54 21.00 7.18 87.66 0.63 21.63 16 15 O -0.54 -26.05 14.87 -3.03 -0.05 -26.10 16 16 C -0.12 -5.18 4.71 71.23 0.34 -4.85 16 17 S -0.14 -8.20 20.57 -56.49 -1.16 -9.36 16 18 C -0.55 -32.09 9.50 67.96 0.65 -31.45 16 19 H 0.08 4.25 7.80 -2.91 -0.02 4.23 16 20 C 0.02 0.96 5.49 84.86 0.47 1.42 16 21 N -0.91 -57.23 13.22 21.65 0.29 -56.94 16 22 Si 0.99 44.54 29.55 68.60 2.03 46.57 16 23 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 24 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 25 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 26 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.05 1.17 8.14 -2.39 -0.02 1.16 16 28 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.06 1.20 7.35 -2.39 -0.02 1.19 16 36 H 0.06 1.59 7.88 -2.39 -0.02 1.57 16 37 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.08 1.36 7.44 -2.39 -0.02 1.34 16 39 H 0.08 1.64 7.94 -2.39 -0.02 1.62 16 40 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.06 1.71 7.15 -2.39 -0.02 1.69 16 42 H 0.11 1.58 7.89 -2.39 -0.02 1.57 16 43 H 0.06 0.99 8.12 -2.39 -0.02 0.97 16 44 H 0.07 1.34 6.44 -2.39 -0.02 1.33 16 45 H 0.10 1.16 7.89 -2.39 -0.02 1.15 16 46 H 0.10 3.82 7.40 -2.40 -0.02 3.80 16 47 H 0.09 3.69 8.11 -2.40 -0.02 3.67 16 48 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 Total: -1.00 -79.21 397.51 1.89 -77.33 By element: Atomic # 1 Polarization: 22.58 SS G_CDS: 0.89 Total: 23.47 kcal Atomic # 6 Polarization: -25.03 SS G_CDS: 6.54 Total: -18.48 kcal Atomic # 7 Polarization: -87.06 SS G_CDS: -6.37 Total: -93.44 kcal Atomic # 8 Polarization: -26.05 SS G_CDS: -0.05 Total: -26.10 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Atomic # 16 Polarization: -8.20 SS G_CDS: -1.16 Total: -9.36 kcal Total: -79.21 1.89 -77.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230819087.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.091 kcal (2) G-P(sol) polarization free energy of solvation -79.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds