Wall clock time and date at job start Tue Mar 31 2020 11:30:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47196 * 2 1 4 4 C 1.52999 * 109.47518 * 180.02562 * 3 2 1 5 5 N 1.46898 * 109.47370 * 184.42239 * 4 3 2 6 6 C 1.46905 * 111.00195 * 160.63688 * 5 4 3 7 7 C 1.50701 * 109.46980 * 288.29243 * 6 5 4 8 8 H 1.08001 * 120.00017 * 355.72268 * 7 6 5 9 9 C 1.37871 * 119.99792 * 175.73266 * 7 6 5 10 10 N 1.31519 * 120.00236 * 179.97438 * 9 7 6 11 11 Si 1.86798 * 120.00139 * 359.97438 * 9 7 6 12 12 H 1.48495 * 109.47400 * 90.00402 * 11 9 7 13 13 H 1.48503 * 109.47153 * 210.00445 * 11 9 7 14 14 H 1.48499 * 109.47132 * 330.00295 * 11 9 7 15 15 C 1.46894 * 111.00043 * 284.59164 * 5 4 3 16 16 C 1.50703 * 109.47438 * 169.99818 * 15 5 4 17 17 C 1.34549 * 126.07781 * 94.99708 * 16 15 5 18 18 O 1.34780 * 107.26986 * 180.22925 * 17 16 15 19 19 C 1.34427 * 107.69307 * 359.58249 * 18 17 16 20 20 C 1.47824 * 125.72809 * 180.16145 * 19 18 17 21 21 C 1.39566 * 120.14689 * 180.02562 * 20 19 18 22 22 C 1.37963 * 119.85053 * 179.74711 * 21 20 19 23 23 C 1.38356 * 120.14565 * 0.55334 * 22 21 20 24 24 C 1.38348 * 120.29275 * 359.69791 * 23 22 21 25 25 C 1.37964 * 120.14472 * 0.02562 * 24 23 22 26 26 N 1.31226 * 108.54472 * 0.42551 * 19 18 17 27 27 H 1.09002 * 109.47411 * 300.00112 * 1 2 3 28 28 H 1.09005 * 109.46777 * 60.00224 * 1 2 3 29 29 H 1.09004 * 109.46949 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47724 * 240.00327 * 2 1 3 31 31 H 1.08996 * 109.47540 * 119.99945 * 2 1 3 32 32 H 1.09002 * 109.47031 * 59.99655 * 3 2 1 33 33 H 1.08999 * 109.47319 * 300.00263 * 3 2 1 34 34 H 1.08997 * 109.47409 * 64.41700 * 4 3 2 35 35 H 1.09009 * 109.46745 * 304.42058 * 4 3 2 36 36 H 1.09003 * 109.46924 * 48.28988 * 6 5 4 37 37 H 1.08991 * 109.46997 * 168.28656 * 6 5 4 38 38 H 0.96999 * 120.00542 * 179.97438 * 10 9 7 39 39 H 1.09000 * 109.47465 * 49.99917 * 15 5 4 40 40 H 1.08999 * 109.47262 * 290.00010 * 15 5 4 41 41 H 1.07997 * 126.36607 * 359.96723 * 17 16 15 42 42 H 1.08000 * 120.07289 * 0.02562 * 21 20 19 43 43 H 1.08002 * 119.92213 * 180.27571 * 22 21 20 44 44 H 1.08002 * 119.84804 * 179.72504 * 23 22 21 45 45 H 1.07998 * 119.93139 * 180.02562 * 24 23 22 46 46 H 1.08005 * 120.07268 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0596 2.8234 0.1061 6 6 5.4552 2.8532 0.5639 7 6 5.5147 2.4682 2.0197 8 1 4.6018 2.2929 2.5696 9 6 6.7344 2.3399 2.6496 10 7 6.7863 2.0043 3.9202 11 14 8.3132 2.6427 1.6983 12 1 8.6886 4.0754 1.8052 13 1 9.4001 1.8028 2.2628 14 1 8.1062 2.2904 0.2706 15 6 3.9088 3.5356 -1.1697 16 6 4.1869 5.0022 -0.9624 17 6 5.3645 5.6214 -1.1629 18 8 5.1891 6.9227 -0.8588 19 6 3.9079 7.0861 -0.4859 20 6 3.2854 8.3612 -0.0716 21 6 1.9391 8.3975 0.2945 22 6 1.3656 9.5900 0.6851 23 6 2.1190 10.7502 0.7034 24 6 3.4527 10.7221 0.3366 25 6 4.0399 9.5352 -0.0505 26 7 3.3042 5.9225 -0.5458 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9564 -0.8899 34 1 3.9330 0.9990 -0.9277 35 1 3.9336 0.8615 0.8469 36 1 6.0451 2.1488 -0.0226 37 1 5.8578 3.8581 0.4371 38 1 7.6444 1.9137 4.3632 39 1 2.8915 3.4075 -1.5394 40 1 4.6131 3.1315 -1.8969 41 1 6.2811 5.1606 -1.5002 42 1 1.3487 7.4933 0.2764 43 1 0.3250 9.6185 0.9729 44 1 1.6640 11.6819 1.0057 45 1 4.0355 11.6312 0.3535 46 1 5.0813 9.5145 -0.3362 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231630752.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:37 Heat of formation + Delta-G solvation = 43.708931 kcal Electronic energy + Delta-G solvation = -25518.183501 eV Core-core repulsion = 21988.189283 eV Total energy + Delta-G solvation = -3529.994218 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.02624 -39.09693 -37.48113 -34.84593 -34.07781 -32.60153 -32.17198 -31.09282 -29.60774 -28.85607 -27.47046 -25.01729 -23.81192 -22.82074 -22.66604 -21.15780 -20.77369 -20.61613 -19.71482 -17.69241 -16.87423 -16.42545 -16.36754 -15.60072 -15.34926 -15.00992 -14.76806 -14.46068 -14.19617 -13.83842 -13.61655 -13.56601 -13.51784 -12.98759 -12.89266 -12.47675 -12.31129 -12.19711 -11.97096 -11.58700 -11.46193 -11.22450 -11.04939 -10.91040 -10.87354 -10.63732 -10.46128 -10.27797 -10.18484 -9.96339 -9.89556 -9.52477 -9.30316 -9.11492 -8.57070 -8.07376 -7.37606 -6.04506 -4.00899 0.67106 1.25042 1.97368 2.84562 2.94959 3.25318 3.31585 3.33055 3.75424 4.03317 4.40337 4.72528 4.77216 4.79788 4.95161 5.09395 5.13384 5.26226 5.27543 5.27763 5.36981 5.42259 5.44956 5.56598 5.71874 5.77551 5.81008 5.86221 6.03590 6.04491 6.06765 6.09548 6.14452 6.18291 6.28682 6.32147 6.36559 6.37988 6.48427 6.53823 6.69300 6.75257 6.75518 6.90565 6.96510 7.61510 7.87645 7.99678 8.03045 8.67152 9.06858 9.57255 11.08904 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.008980 B = 0.004180 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3117.447344 B = 6697.441348 C = 8677.631206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C -0.112 4.112 4 C 0.064 3.936 5 N -0.520 5.520 6 C 0.157 3.843 7 C -0.503 4.503 8 H 0.081 0.919 9 C 0.069 3.931 10 N -0.900 5.900 11 Si 0.869 3.131 12 H -0.277 1.277 13 H -0.285 1.285 14 H -0.267 1.267 15 C 0.130 3.870 16 C 0.020 3.980 17 C -0.067 4.067 18 O -0.199 6.199 19 C 0.214 3.786 20 C -0.005 4.005 21 C -0.071 4.071 22 C -0.122 4.122 23 C -0.108 4.108 24 C -0.123 4.123 25 C -0.094 4.094 26 N -0.444 5.444 27 H 0.054 0.946 28 H 0.049 0.951 29 H 0.048 0.952 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.051 0.949 34 H 0.020 0.980 35 H 0.090 0.910 36 H -0.010 1.010 37 H 0.022 0.978 38 H 0.263 0.737 39 H 0.084 0.916 40 H 0.040 0.960 41 H 0.213 0.787 42 H 0.140 0.860 43 H 0.130 0.870 44 H 0.125 0.875 45 H 0.128 0.872 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.004 11.259 -11.681 18.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C -0.150 4.150 4 C -0.064 4.064 5 N -0.244 5.244 6 C 0.031 3.969 7 C -0.541 4.541 8 H 0.099 0.901 9 C -0.133 4.133 10 N -0.539 5.539 11 Si 0.696 3.304 12 H -0.202 1.202 13 H -0.211 1.211 14 H -0.192 1.192 15 C 0.001 3.999 16 C -0.102 4.102 17 C -0.138 4.138 18 O -0.085 6.085 19 C 0.010 3.990 20 C -0.006 4.006 21 C -0.091 4.091 22 C -0.140 4.140 23 C -0.127 4.127 24 C -0.141 4.141 25 C -0.113 4.113 26 N -0.173 5.173 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.070 0.930 34 H 0.038 0.962 35 H 0.109 0.891 36 H 0.008 0.992 37 H 0.040 0.960 38 H 0.073 0.927 39 H 0.103 0.897 40 H 0.058 0.942 41 H 0.229 0.771 42 H 0.158 0.842 43 H 0.148 0.852 44 H 0.143 0.857 45 H 0.146 0.854 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -9.744 11.373 -11.030 18.600 hybrid contribution 2.440 -0.262 -1.055 2.671 sum -7.304 11.111 -12.085 17.968 Atomic orbital electron populations 1.21752 0.96345 1.00921 1.01630 1.21495 0.95333 0.97558 1.01811 1.21592 0.95736 0.95559 1.02118 1.22041 0.94245 0.89497 1.00605 1.61860 1.23787 1.14278 1.24503 1.20276 0.83787 0.95778 0.97041 1.21012 0.94500 1.45744 0.92891 0.90062 1.24887 0.98618 0.95027 0.94746 1.69891 1.25423 1.48624 1.09964 0.86956 0.84063 0.78597 0.80748 1.20239 1.21100 1.19228 1.20355 1.01380 0.85761 0.92377 1.21595 0.89705 0.97097 1.01799 1.24893 1.01627 0.80371 1.06934 1.84439 1.30607 1.28749 1.64692 1.23711 0.78994 0.94676 1.01600 1.17297 0.93608 0.87028 1.02683 1.21239 0.92993 0.99050 0.95781 1.21111 1.00380 0.92168 1.00316 1.21318 0.94246 0.98450 0.98663 1.21039 0.95319 0.97643 1.00067 1.21254 1.00014 0.91580 0.98469 1.70466 1.33120 0.97836 1.15919 0.92717 0.93154 0.93293 0.92638 0.91788 0.91094 0.93009 0.96222 0.89134 0.99198 0.95966 0.92718 0.89723 0.94161 0.77055 0.84243 0.85203 0.85697 0.85440 0.85260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.91 37.15 0.37 -1.37 16 2 C -0.12 -1.67 5.93 -26.73 -0.16 -1.83 16 3 C -0.11 -1.78 5.25 -26.73 -0.14 -1.92 16 4 C 0.06 1.20 4.82 -3.83 -0.02 1.18 16 5 N -0.52 -10.96 4.38 -237.52 -1.04 -12.00 16 6 C 0.16 3.80 3.68 -4.97 -0.02 3.78 16 7 C -0.50 -14.42 8.85 -34.44 -0.30 -14.73 16 8 H 0.08 2.57 8.03 -52.49 -0.42 2.15 16 9 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 10 N -0.90 -27.79 13.96 55.43 0.77 -27.02 16 11 Si 0.87 21.43 27.56 -169.99 -4.68 16.75 16 12 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 13 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 14 H -0.27 -6.23 6.42 56.52 0.36 -5.87 16 15 C 0.13 2.30 5.33 -4.98 -0.03 2.27 16 16 C 0.02 0.37 5.90 -82.88 -0.49 -0.12 16 17 C -0.07 -1.13 10.66 29.43 0.31 -0.82 16 18 O -0.20 -3.40 10.52 4.05 0.04 -3.36 16 19 C 0.21 3.69 7.90 -13.89 -0.11 3.58 16 20 C 0.00 -0.07 5.87 -104.98 -0.62 -0.69 16 21 C -0.07 -0.91 9.69 -39.19 -0.38 -1.29 16 22 C -0.12 -1.22 10.03 -39.64 -0.40 -1.62 16 23 C -0.11 -0.98 10.04 -39.50 -0.40 -1.37 16 24 C -0.12 -1.18 10.03 -39.64 -0.40 -1.58 16 25 C -0.09 -1.13 9.72 -39.18 -0.38 -1.51 16 26 N -0.44 -8.38 10.91 -7.97 -0.09 -8.46 16 27 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.05 0.77 6.91 -51.93 -0.36 0.41 16 34 H 0.02 0.34 8.00 -51.93 -0.42 -0.08 16 35 H 0.09 1.93 7.10 -51.92 -0.37 1.56 16 36 H -0.01 -0.23 6.81 -51.93 -0.35 -0.59 16 37 H 0.02 0.54 5.47 -51.93 -0.28 0.26 16 38 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 39 H 0.08 1.38 6.68 -51.93 -0.35 1.03 16 40 H 0.04 0.64 8.12 -51.93 -0.42 0.22 16 41 H 0.21 2.93 8.06 -52.49 -0.42 2.51 16 42 H 0.14 1.83 7.83 -52.49 -0.41 1.42 16 43 H 0.13 0.98 8.06 -52.49 -0.42 0.55 16 44 H 0.13 0.78 8.06 -52.49 -0.42 0.36 16 45 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 46 H 0.13 1.44 7.90 -52.48 -0.41 1.03 16 LS Contribution 379.31 15.07 5.72 5.72 Total: -1.00 -32.99 379.31 -9.73 -42.71 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -7.20 Total: 1.80 kcal Atomic # 6 Polarization: -12.89 SS G_CDS: -3.25 Total: -16.14 kcal Atomic # 7 Polarization: -47.13 SS G_CDS: -0.35 Total: -47.48 kcal Atomic # 8 Polarization: -3.40 SS G_CDS: 0.04 Total: -3.36 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.68 Total: 16.75 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.99 -9.73 -42.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231630752.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.422 kcal (2) G-P(sol) polarization free energy of solvation -32.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds