Wall clock time and date at job start Tue Mar 31 2020 11:30:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.47196 * 2 1 4 4 C 1.52999 * 109.47518 * 180.02562 * 3 2 1 5 5 N 1.46898 * 109.47370 * 184.42239 * 4 3 2 6 6 C 1.46905 * 111.00195 * 160.63688 * 5 4 3 7 7 C 1.50701 * 109.46980 * 288.29243 * 6 5 4 8 8 H 1.08001 * 120.00017 * 355.72268 * 7 6 5 9 9 C 1.37871 * 119.99792 * 175.73266 * 7 6 5 10 10 N 1.31519 * 120.00236 * 179.97438 * 9 7 6 11 11 Si 1.86798 * 120.00139 * 359.97438 * 9 7 6 12 12 H 1.48495 * 109.47400 * 90.00402 * 11 9 7 13 13 H 1.48503 * 109.47153 * 210.00445 * 11 9 7 14 14 H 1.48499 * 109.47132 * 330.00295 * 11 9 7 15 15 C 1.46894 * 111.00043 * 284.59164 * 5 4 3 16 16 C 1.50703 * 109.47438 * 169.99818 * 15 5 4 17 17 C 1.34549 * 126.07781 * 94.99708 * 16 15 5 18 18 O 1.34780 * 107.26986 * 180.22925 * 17 16 15 19 19 C 1.34427 * 107.69307 * 359.58249 * 18 17 16 20 20 C 1.47824 * 125.72809 * 180.16145 * 19 18 17 21 21 C 1.39566 * 120.14689 * 180.02562 * 20 19 18 22 22 C 1.37963 * 119.85053 * 179.74711 * 21 20 19 23 23 C 1.38356 * 120.14565 * 0.55334 * 22 21 20 24 24 C 1.38348 * 120.29275 * 359.69791 * 23 22 21 25 25 C 1.37964 * 120.14472 * 0.02562 * 24 23 22 26 26 N 1.31226 * 108.54472 * 0.42551 * 19 18 17 27 27 H 1.09002 * 109.47411 * 300.00112 * 1 2 3 28 28 H 1.09005 * 109.46777 * 60.00224 * 1 2 3 29 29 H 1.09004 * 109.46949 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47724 * 240.00327 * 2 1 3 31 31 H 1.08996 * 109.47540 * 119.99945 * 2 1 3 32 32 H 1.09002 * 109.47031 * 59.99655 * 3 2 1 33 33 H 1.08999 * 109.47319 * 300.00263 * 3 2 1 34 34 H 1.08997 * 109.47409 * 64.41700 * 4 3 2 35 35 H 1.09009 * 109.46745 * 304.42058 * 4 3 2 36 36 H 1.09003 * 109.46924 * 48.28988 * 6 5 4 37 37 H 1.08991 * 109.46997 * 168.28656 * 6 5 4 38 38 H 0.96999 * 120.00542 * 179.97438 * 10 9 7 39 39 H 1.09000 * 109.47465 * 49.99917 * 15 5 4 40 40 H 1.08999 * 109.47262 * 290.00010 * 15 5 4 41 41 H 1.07997 * 126.36607 * 359.96723 * 17 16 15 42 42 H 1.08000 * 120.07289 * 0.02562 * 21 20 19 43 43 H 1.08002 * 119.92213 * 180.27571 * 22 21 20 44 44 H 1.08002 * 119.84804 * 179.72504 * 23 22 21 45 45 H 1.07998 * 119.93139 * 180.02562 * 24 23 22 46 46 H 1.08005 * 120.07268 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0596 2.8234 0.1061 6 6 5.4552 2.8532 0.5639 7 6 5.5147 2.4682 2.0197 8 1 4.6018 2.2929 2.5696 9 6 6.7344 2.3399 2.6496 10 7 6.7863 2.0043 3.9202 11 14 8.3132 2.6427 1.6983 12 1 8.6886 4.0754 1.8052 13 1 9.4001 1.8028 2.2628 14 1 8.1062 2.2904 0.2706 15 6 3.9088 3.5356 -1.1697 16 6 4.1869 5.0022 -0.9624 17 6 5.3645 5.6214 -1.1629 18 8 5.1891 6.9227 -0.8588 19 6 3.9079 7.0861 -0.4859 20 6 3.2854 8.3612 -0.0716 21 6 1.9391 8.3975 0.2945 22 6 1.3656 9.5900 0.6851 23 6 2.1190 10.7502 0.7034 24 6 3.4527 10.7221 0.3366 25 6 4.0399 9.5352 -0.0505 26 7 3.3042 5.9225 -0.5458 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9564 -0.8899 34 1 3.9330 0.9990 -0.9277 35 1 3.9336 0.8615 0.8469 36 1 6.0451 2.1488 -0.0226 37 1 5.8578 3.8581 0.4371 38 1 7.6444 1.9137 4.3632 39 1 2.8915 3.4075 -1.5394 40 1 4.6131 3.1315 -1.8969 41 1 6.2811 5.1606 -1.5002 42 1 1.3487 7.4933 0.2764 43 1 0.3250 9.6185 0.9729 44 1 1.6640 11.6819 1.0057 45 1 4.0355 11.6312 0.3535 46 1 5.0813 9.5145 -0.3362 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231630752.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:36 Heat of formation + Delta-G solvation = 21.878596 kcal Electronic energy + Delta-G solvation = -25519.130135 eV Core-core repulsion = 21988.189283 eV Total energy + Delta-G solvation = -3530.940852 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -44.31595 -39.95267 -39.04041 -36.12377 -35.49804 -34.54451 -33.35086 -31.93530 -30.80637 -30.60469 -28.88030 -26.53788 -24.91185 -24.27148 -23.75954 -22.46024 -22.02046 -21.86503 -21.22724 -19.06593 -18.73629 -17.73740 -17.45611 -16.77582 -16.61184 -16.45847 -16.04416 -15.91820 -15.61294 -15.16816 -14.93680 -14.69440 -14.53472 -14.38224 -14.00290 -13.88358 -13.84916 -13.62372 -13.34515 -13.00233 -12.64234 -12.47675 -12.39187 -12.28369 -12.06477 -12.03244 -11.92905 -11.82854 -11.61978 -11.53897 -11.45525 -11.28541 -10.80432 -10.62631 -9.95258 -9.23401 -8.98593 -8.29326 -6.32114 -0.34384 0.41661 0.79375 1.30088 1.32600 1.42287 1.64639 1.69395 2.31813 2.82946 2.89248 3.03857 3.25466 3.75813 3.83483 3.98968 4.03262 4.05737 4.18589 4.21864 4.30977 4.36578 4.44974 4.47177 4.49570 4.55222 4.66650 4.75460 4.80263 4.81934 4.90115 4.91840 4.95237 5.02850 5.08446 5.09762 5.15017 5.19698 5.31964 5.45349 5.47550 5.48919 5.52676 5.53543 5.54293 5.95761 5.98488 6.38664 6.61961 6.70256 6.74072 7.30710 8.87937 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.008980 B = 0.004180 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3117.447344 B = 6697.441348 C = 8677.631206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.120 4.120 3 C -0.102 4.102 4 C 0.067 3.933 5 N -0.544 5.544 6 C 0.172 3.828 7 C -0.511 4.511 8 H 0.029 0.971 9 C 0.006 3.994 10 N -0.950 5.950 11 Si 0.942 3.058 12 H -0.269 1.269 13 H -0.281 1.281 14 H -0.240 1.240 15 C 0.135 3.865 16 C -0.007 4.007 17 C -0.070 4.070 18 O -0.203 6.203 19 C 0.213 3.787 20 C -0.042 4.042 21 C -0.088 4.088 22 C -0.121 4.121 23 C -0.096 4.096 24 C -0.119 4.119 25 C -0.102 4.102 26 N -0.478 5.478 27 H 0.046 0.954 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.049 0.951 32 H 0.043 0.957 33 H 0.068 0.932 34 H 0.042 0.958 35 H 0.053 0.947 36 H -0.002 1.002 37 H 0.025 0.975 38 H 0.266 0.734 39 H 0.096 0.904 40 H 0.066 0.934 41 H 0.242 0.758 42 H 0.124 0.876 43 H 0.156 0.844 44 H 0.163 0.837 45 H 0.160 0.840 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.777 13.231 -13.896 21.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.159 4.159 3 C -0.140 4.140 4 C -0.061 4.061 5 N -0.268 5.268 6 C 0.045 3.955 7 C -0.550 4.550 8 H 0.047 0.953 9 C -0.191 4.191 10 N -0.591 5.591 11 Si 0.765 3.235 12 H -0.194 1.194 13 H -0.206 1.206 14 H -0.163 1.163 15 C 0.007 3.993 16 C -0.129 4.129 17 C -0.140 4.140 18 O -0.089 6.089 19 C 0.009 3.991 20 C -0.043 4.043 21 C -0.107 4.107 22 C -0.139 4.139 23 C -0.114 4.114 24 C -0.137 4.137 25 C -0.121 4.121 26 N -0.207 5.207 27 H 0.065 0.935 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.086 0.914 34 H 0.060 0.940 35 H 0.071 0.929 36 H 0.015 0.985 37 H 0.043 0.957 38 H 0.075 0.925 39 H 0.114 0.886 40 H 0.084 0.916 41 H 0.258 0.742 42 H 0.142 0.858 43 H 0.174 0.826 44 H 0.181 0.819 45 H 0.177 0.823 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -9.548 13.335 -13.269 21.096 hybrid contribution 2.215 -0.765 -0.276 2.360 sum -7.332 12.570 -13.545 19.881 Atomic orbital electron populations 1.21723 0.94632 1.02118 1.01823 1.21472 0.96807 0.95642 1.01937 1.21497 0.93710 0.97263 1.01486 1.22013 0.95953 0.88166 0.99941 1.61724 1.21949 1.15811 1.27345 1.19976 0.85959 0.95571 0.94032 1.21230 0.92819 1.45647 0.95287 0.95268 1.25868 1.02882 0.94581 0.95733 1.70065 1.26636 1.50240 1.12174 0.85786 0.78479 0.78746 0.80463 1.19433 1.20635 1.16279 1.20394 1.02778 0.85146 0.90989 1.21838 0.90493 0.97480 1.03049 1.25427 1.02170 0.80189 1.06250 1.84444 1.30680 1.29009 1.64806 1.24390 0.78918 0.95382 1.00410 1.17557 0.94590 0.86782 1.05363 1.21289 0.92605 0.99885 0.96957 1.21449 1.01750 0.91428 0.99267 1.21800 0.93857 0.99373 0.96376 1.21452 0.95963 0.97731 0.98530 1.21430 1.00204 0.91742 0.98733 1.70439 1.34072 0.98725 1.17479 0.93508 0.92008 0.91604 0.90955 0.93220 0.93847 0.91376 0.93955 0.92865 0.98455 0.95690 0.92535 0.88622 0.91647 0.74210 0.85801 0.82646 0.81938 0.82260 0.84985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.23 9.91 71.98 0.71 -2.52 16 2 C -0.12 -3.21 5.93 30.59 0.18 -3.03 16 3 C -0.10 -3.27 5.25 30.59 0.16 -3.11 16 4 C 0.07 2.55 4.82 86.30 0.42 2.96 16 5 N -0.54 -23.24 4.38 -905.37 -3.96 -27.20 16 6 C 0.17 8.31 3.68 85.56 0.31 8.62 16 7 C -0.51 -30.57 8.85 25.60 0.23 -30.34 16 8 H 0.03 1.98 8.03 -2.91 -0.02 1.96 16 9 C 0.01 0.37 5.47 84.65 0.46 0.83 16 10 N -0.95 -60.95 13.96 21.45 0.30 -60.65 16 11 Si 0.94 44.13 27.56 68.60 1.89 46.02 16 12 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 13 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 14 H -0.24 -10.07 6.42 99.48 0.64 -9.43 16 15 C 0.13 4.65 5.33 85.56 0.46 5.11 16 16 C -0.01 -0.27 5.90 41.36 0.24 -0.02 16 17 C -0.07 -2.29 10.66 66.97 0.71 -1.58 16 18 O -0.20 -6.94 10.52 -8.43 -0.09 -7.03 16 19 C 0.21 7.52 7.90 87.32 0.69 8.21 16 20 C -0.04 -1.21 5.87 -20.10 -0.12 -1.33 16 21 C -0.09 -2.27 9.69 22.53 0.22 -2.05 16 22 C -0.12 -2.19 10.03 22.23 0.22 -1.97 16 23 C -0.10 -1.39 10.04 22.32 0.22 -1.17 16 24 C -0.12 -1.94 10.03 22.23 0.22 -1.72 16 25 C -0.10 -2.34 9.72 22.53 0.22 -2.12 16 26 N -0.48 -18.55 10.91 -293.19 -3.20 -21.75 16 27 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.06 1.23 8.14 -2.38 -0.02 1.21 16 29 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.07 1.97 6.91 -2.39 -0.02 1.95 16 34 H 0.04 1.41 8.00 -2.39 -0.02 1.39 16 35 H 0.05 2.40 7.10 -2.38 -0.02 2.39 16 36 H 0.00 -0.10 6.81 -2.39 -0.02 -0.12 16 37 H 0.03 1.20 5.47 -2.39 -0.01 1.19 16 38 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 39 H 0.10 3.04 6.68 -2.39 -0.02 3.02 16 40 H 0.07 1.93 8.12 -2.39 -0.02 1.91 16 41 H 0.24 6.10 8.06 -2.91 -0.02 6.07 16 42 H 0.12 3.46 7.83 -2.91 -0.02 3.44 16 43 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 44 H 0.16 1.18 8.06 -2.91 -0.02 1.15 16 45 H 0.16 1.57 8.06 -2.91 -0.02 1.54 16 46 H 0.13 2.85 7.90 -2.91 -0.02 2.82 16 Total: -1.00 -76.43 379.31 1.39 -75.03 By element: Atomic # 1 Polarization: 19.93 SS G_CDS: 0.89 Total: 20.81 kcal Atomic # 6 Polarization: -30.80 SS G_CDS: 5.57 Total: -25.23 kcal Atomic # 7 Polarization: -102.73 SS G_CDS: -6.86 Total: -109.60 kcal Atomic # 8 Polarization: -6.94 SS G_CDS: -0.09 Total: -7.03 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 1.89 Total: 46.02 kcal Total: -76.43 1.39 -75.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231630752.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.913 kcal (2) G-P(sol) polarization free energy of solvation -76.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds