Wall clock time and date at job start Tue Mar 31 2020 11:30:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53003 * 109.47303 * 2 1 4 4 C 1.53000 * 109.47145 * 179.97438 * 3 2 1 5 5 N 1.46895 * 109.47218 * 179.27395 * 4 3 2 6 6 C 1.46895 * 111.00401 * 287.85498 * 5 4 3 7 7 C 1.50706 * 109.46933 * 299.51348 * 6 5 4 8 8 H 1.07997 * 119.99537 * 4.56051 * 7 6 5 9 9 C 1.37878 * 120.00188 * 184.56102 * 7 6 5 10 10 N 1.31517 * 119.99644 * 0.02562 * 9 7 6 11 11 Si 1.86790 * 120.00079 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47617 * 59.99809 * 11 9 7 13 13 H 1.48498 * 109.47400 * 180.02562 * 11 9 7 14 14 H 1.48506 * 109.47236 * 299.99728 * 11 9 7 15 15 C 1.46894 * 111.00252 * 163.89577 * 5 4 3 16 16 C 1.50701 * 109.47326 * 190.00308 * 15 5 4 17 17 C 1.36208 * 120.13742 * 260.00236 * 16 15 5 18 18 C 1.39198 * 120.94319 * 179.97438 * 17 16 15 19 19 C 1.36590 * 121.00411 * 0.02562 * 18 17 16 20 20 O 1.35840 * 120.18670 * 180.02562 * 19 18 17 21 21 C 1.41046 * 119.63520 * 0.02562 * 19 18 17 22 22 N 1.33604 * 121.07719 * 179.72654 * 21 19 18 23 23 C 1.31084 * 121.32239 * 179.72263 * 22 21 19 24 24 C 1.39339 * 121.74060 * 0.57503 * 23 22 21 25 25 C 1.36572 * 119.92627 * 359.70980 * 24 23 22 26 26 C 1.40411 * 120.13915 * 80.04562 * 16 15 5 27 27 H 1.09001 * 109.47644 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47230 * 300.00042 * 1 2 3 29 29 H 1.09001 * 109.47318 * 59.99961 * 1 2 3 30 30 H 1.08999 * 109.47661 * 239.99707 * 2 1 3 31 31 H 1.09001 * 109.47318 * 120.00039 * 2 1 3 32 32 H 1.09003 * 109.46686 * 59.99985 * 3 2 1 33 33 H 1.08995 * 109.47027 * 299.99830 * 3 2 1 34 34 H 1.09001 * 109.47200 * 59.27288 * 4 3 2 35 35 H 1.09004 * 109.47038 * 299.27395 * 4 3 2 36 36 H 1.09005 * 109.47164 * 59.50796 * 6 5 4 37 37 H 1.09000 * 109.47494 * 179.51007 * 6 5 4 38 38 H 0.97005 * 119.99728 * 180.02562 * 10 9 7 39 39 H 1.08996 * 109.47234 * 70.00495 * 15 5 4 40 40 H 1.08996 * 109.47310 * 310.00258 * 15 5 4 41 41 H 1.08006 * 119.52471 * 0.02562 * 17 16 15 42 42 H 1.08007 * 119.49456 * 179.97438 * 18 17 16 43 43 H 0.96710 * 113.99906 * 269.97997 * 20 19 18 44 44 H 1.08005 * 119.12968 * 180.28578 * 23 22 21 45 45 H 1.07996 * 120.03880 * 179.73879 * 24 23 22 46 46 H 1.08003 * 120.92254 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0597 2.8273 -0.0169 6 6 3.8394 3.4471 -1.3303 7 6 4.5835 2.6683 -2.3844 8 1 5.1015 1.7587 -2.1187 9 6 4.6031 3.1172 -3.6879 10 7 3.9727 4.2252 -4.0113 11 14 5.5248 2.1517 -4.9945 12 1 4.9541 0.7843 -5.0945 13 1 5.3937 2.8402 -6.3036 14 1 6.9602 2.0630 -4.6241 15 6 5.4772 2.8893 0.3633 16 6 5.8787 4.3266 0.5732 17 6 6.5474 4.9995 -0.4041 18 6 6.9258 6.3275 -0.2284 19 6 6.6381 6.9938 0.9288 20 8 7.0148 8.2898 1.0824 21 6 5.9477 6.3287 1.9634 22 7 5.6562 6.9510 3.1091 23 6 5.0101 6.3391 4.0717 24 6 4.6063 5.0107 3.9545 25 6 4.8774 4.3145 2.8112 26 6 5.5657 4.9774 1.7774 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9337 0.9172 -0.8825 35 1 3.9329 0.9401 0.8973 36 1 2.7738 3.4427 -1.5600 37 1 4.2031 4.4744 -1.3130 38 1 3.9861 4.5409 -4.9285 39 1 6.0855 2.4543 -0.4297 40 1 5.6305 2.3307 1.2867 41 1 6.7868 4.4957 -1.3290 42 1 7.4557 6.8385 -1.0187 43 1 7.8935 8.4006 1.4709 44 1 4.7889 6.8776 4.9814 45 1 4.0790 4.5323 4.7665 46 1 4.5723 3.2841 2.7033 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232278409.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:09 Heat of formation + Delta-G solvation = 1.486304 kcal Electronic energy + Delta-G solvation = -26489.905819 eV Core-core repulsion = 22958.080690 eV Total energy + Delta-G solvation = -3531.825129 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.72903 -37.78063 -37.68170 -35.89636 -34.13355 -32.81476 -32.26390 -30.32274 -29.91592 -28.14048 -26.85245 -24.53848 -23.88790 -23.42438 -23.18876 -21.33198 -20.29514 -19.52469 -18.17892 -17.82312 -16.84965 -16.36711 -15.84989 -15.25419 -14.94226 -14.66149 -14.52046 -14.40735 -13.99178 -13.71858 -13.56411 -13.27613 -12.95111 -12.85761 -12.57247 -12.30116 -12.15512 -11.69777 -11.68675 -11.25137 -11.18811 -10.97389 -10.85083 -10.78384 -10.56603 -10.48591 -10.32830 -10.19066 -10.08032 -9.96711 -9.88630 -9.59827 -9.22477 -8.50769 -8.43673 -7.66047 -7.21037 -6.06150 -4.15658 0.67810 1.11362 2.23750 3.22740 3.23060 3.29840 3.30943 4.24711 4.35319 4.36134 4.53326 4.91128 4.98596 5.15758 5.18540 5.23744 5.25888 5.32973 5.40612 5.50404 5.53261 5.58274 5.72944 5.82478 5.91237 6.02034 6.08507 6.11308 6.18495 6.25662 6.28705 6.31069 6.34654 6.42120 6.47039 6.52593 6.65000 6.76457 6.85764 6.91118 7.04648 7.11751 7.24713 7.51319 7.82540 7.87801 7.98979 8.18259 8.20544 8.26102 8.94353 9.50490 10.98495 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.009898 B = 0.005311 C = 0.003707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2828.249399 B = 5270.448936 C = 7551.850443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C -0.109 4.109 4 C 0.059 3.941 5 N -0.537 5.537 6 C 0.184 3.816 7 C -0.549 4.549 8 H 0.056 0.944 9 C 0.069 3.931 10 N -0.886 5.886 11 Si 0.883 3.117 12 H -0.278 1.278 13 H -0.287 1.287 14 H -0.277 1.277 15 C 0.095 3.905 16 C -0.041 4.041 17 C -0.083 4.083 18 C -0.118 4.118 19 C 0.111 3.889 20 O -0.483 6.483 21 C 0.099 3.901 22 N -0.469 5.469 23 C 0.118 3.882 24 C -0.188 4.188 25 C -0.036 4.036 26 C -0.072 4.072 27 H 0.047 0.953 28 H 0.050 0.950 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.049 0.951 35 H 0.046 0.954 36 H 0.029 0.971 37 H 0.038 0.962 38 H 0.263 0.737 39 H 0.057 0.943 40 H 0.061 0.939 41 H 0.140 0.860 42 H 0.132 0.868 43 H 0.382 0.618 44 H 0.152 0.848 45 H 0.131 0.869 46 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.813 -1.950 13.171 13.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C -0.147 4.147 4 C -0.069 4.069 5 N -0.260 5.260 6 C 0.059 3.941 7 C -0.588 4.588 8 H 0.074 0.926 9 C -0.135 4.135 10 N -0.524 5.524 11 Si 0.711 3.289 12 H -0.203 1.203 13 H -0.212 1.212 14 H -0.203 1.203 15 C -0.033 4.033 16 C -0.042 4.042 17 C -0.102 4.102 18 C -0.138 4.138 19 C 0.065 3.935 20 O -0.292 6.292 21 C -0.023 4.023 22 N -0.177 5.177 23 C -0.055 4.055 24 C -0.208 4.208 25 C -0.062 4.062 26 C -0.075 4.075 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.047 0.953 37 H 0.056 0.944 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.158 0.842 42 H 0.150 0.850 43 H 0.237 0.763 44 H 0.169 0.831 45 H 0.149 0.851 46 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 2.254 -0.541 13.111 13.314 hybrid contribution 0.985 -1.814 -1.489 2.545 sum 3.240 -2.355 11.622 12.293 Atomic orbital electron populations 1.21749 0.96423 1.00779 1.01734 1.21477 0.95332 0.97793 1.01346 1.21501 0.95573 0.95272 1.02362 1.21966 0.94876 0.90385 0.99676 1.62592 1.14001 1.16494 1.32950 1.19802 0.96946 0.95211 0.82143 1.21621 1.33592 1.09500 0.94062 0.92634 1.24916 0.95342 0.94789 0.98414 1.69940 1.42143 1.21289 1.19001 0.86807 0.80423 0.80331 0.81351 1.20323 1.21237 1.20294 1.20886 0.91853 0.90910 0.99621 1.19664 0.95755 0.96788 0.92022 1.20879 0.96795 0.93411 0.99077 1.21168 1.00716 0.94727 0.97160 1.17838 0.99237 0.83902 0.92477 1.84819 1.38561 1.21085 1.84733 1.19146 0.99735 0.90735 0.92691 1.67945 1.12511 1.36921 1.00296 1.22834 0.93525 0.92159 0.97014 1.21815 1.03388 0.96320 0.99314 1.21527 0.92931 1.00461 0.91272 1.18572 0.99612 0.93658 0.95613 0.93436 0.93072 0.92722 0.92211 0.92798 0.92502 0.91296 0.93299 0.93513 0.95330 0.94438 0.92736 0.92446 0.92047 0.84248 0.85046 0.76253 0.83063 0.85073 0.83997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.91 37.15 0.37 -1.48 16 2 C -0.12 -1.67 5.93 -26.73 -0.16 -1.83 16 3 C -0.11 -1.80 5.28 -26.73 -0.14 -1.94 16 4 C 0.06 1.05 4.80 -3.83 -0.02 1.03 16 5 N -0.54 -10.53 4.66 -237.53 -1.11 -11.63 16 6 C 0.18 4.46 4.73 -4.98 -0.02 4.43 16 7 C -0.55 -13.93 7.34 -34.44 -0.25 -14.18 16 8 H 0.06 1.39 5.95 -52.49 -0.31 1.08 16 9 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 10 N -0.89 -25.11 13.29 55.43 0.74 -24.37 16 11 Si 0.88 20.50 29.54 -169.99 -5.02 15.48 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 13 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 14 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 15 C 0.10 1.69 4.19 -4.98 -0.02 1.67 16 16 C -0.04 -0.74 4.60 -104.53 -0.48 -1.22 16 17 C -0.08 -1.51 8.52 -39.96 -0.34 -1.85 16 18 C -0.12 -1.98 9.87 -39.82 -0.39 -2.37 16 19 C 0.11 1.90 6.71 -39.11 -0.26 1.64 16 20 O -0.48 -7.42 13.29 -19.24 -0.26 -7.67 16 21 C 0.10 1.75 6.62 -84.73 -0.56 1.19 16 22 N -0.47 -7.81 10.13 -10.88 -0.11 -7.92 16 23 C 0.12 1.58 11.15 -17.46 -0.19 1.38 16 24 C -0.19 -2.37 10.03 -39.77 -0.40 -2.77 16 25 C -0.04 -0.53 9.37 -39.22 -0.37 -0.90 16 26 C -0.07 -1.25 5.74 -106.81 -0.61 -1.86 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.07 1.33 6.74 -51.93 -0.35 0.98 16 34 H 0.05 0.97 6.12 -51.93 -0.32 0.65 16 35 H 0.05 0.72 7.81 -51.93 -0.41 0.31 16 36 H 0.03 0.76 6.68 -51.93 -0.35 0.42 16 37 H 0.04 1.00 6.45 -51.93 -0.33 0.67 16 38 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 39 H 0.06 1.11 6.46 -51.93 -0.34 0.77 16 40 H 0.06 0.94 6.72 -51.93 -0.35 0.59 16 41 H 0.14 2.68 8.00 -52.48 -0.42 2.26 16 42 H 0.13 1.95 8.06 -52.48 -0.42 1.53 16 43 H 0.38 3.90 9.06 45.56 0.41 4.32 16 44 H 0.15 1.49 8.06 -52.48 -0.42 1.07 16 45 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 46 H 0.14 1.94 6.68 -52.48 -0.35 1.58 16 LS Contribution 370.47 15.07 5.58 5.58 Total: -1.00 -30.39 370.47 -10.18 -40.57 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -6.05 Total: 7.30 kcal Atomic # 6 Polarization: -13.38 SS G_CDS: -3.96 Total: -17.34 kcal Atomic # 7 Polarization: -43.44 SS G_CDS: -0.48 Total: -43.92 kcal Atomic # 8 Polarization: -7.42 SS G_CDS: -0.26 Total: -7.67 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.39 -10.18 -40.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232278409.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.058 kcal (2) G-P(sol) polarization free energy of solvation -30.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds