Wall clock time and date at job start Tue Mar 31 2020 11:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53003 * 109.47303 * 2 1 4 4 C 1.53000 * 109.47145 * 179.97438 * 3 2 1 5 5 N 1.46895 * 109.47218 * 179.27395 * 4 3 2 6 6 C 1.46895 * 111.00401 * 287.85498 * 5 4 3 7 7 C 1.50706 * 109.46933 * 299.51348 * 6 5 4 8 8 H 1.07997 * 119.99537 * 4.56051 * 7 6 5 9 9 C 1.37878 * 120.00188 * 184.56102 * 7 6 5 10 10 N 1.31517 * 119.99644 * 0.02562 * 9 7 6 11 11 Si 1.86790 * 120.00079 * 180.02562 * 9 7 6 12 12 H 1.48500 * 109.47617 * 59.99809 * 11 9 7 13 13 H 1.48498 * 109.47400 * 180.02562 * 11 9 7 14 14 H 1.48506 * 109.47236 * 299.99728 * 11 9 7 15 15 C 1.46894 * 111.00252 * 163.89577 * 5 4 3 16 16 C 1.50701 * 109.47326 * 190.00308 * 15 5 4 17 17 C 1.36208 * 120.13742 * 260.00236 * 16 15 5 18 18 C 1.39198 * 120.94319 * 179.97438 * 17 16 15 19 19 C 1.36590 * 121.00411 * 0.02562 * 18 17 16 20 20 O 1.35840 * 120.18670 * 180.02562 * 19 18 17 21 21 C 1.41046 * 119.63520 * 0.02562 * 19 18 17 22 22 N 1.33604 * 121.07719 * 179.72654 * 21 19 18 23 23 C 1.31084 * 121.32239 * 179.72263 * 22 21 19 24 24 C 1.39339 * 121.74060 * 0.57503 * 23 22 21 25 25 C 1.36572 * 119.92627 * 359.70980 * 24 23 22 26 26 C 1.40411 * 120.13915 * 80.04562 * 16 15 5 27 27 H 1.09001 * 109.47644 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47230 * 300.00042 * 1 2 3 29 29 H 1.09001 * 109.47318 * 59.99961 * 1 2 3 30 30 H 1.08999 * 109.47661 * 239.99707 * 2 1 3 31 31 H 1.09001 * 109.47318 * 120.00039 * 2 1 3 32 32 H 1.09003 * 109.46686 * 59.99985 * 3 2 1 33 33 H 1.08995 * 109.47027 * 299.99830 * 3 2 1 34 34 H 1.09001 * 109.47200 * 59.27288 * 4 3 2 35 35 H 1.09004 * 109.47038 * 299.27395 * 4 3 2 36 36 H 1.09005 * 109.47164 * 59.50796 * 6 5 4 37 37 H 1.09000 * 109.47494 * 179.51007 * 6 5 4 38 38 H 0.97005 * 119.99728 * 180.02562 * 10 9 7 39 39 H 1.08996 * 109.47234 * 70.00495 * 15 5 4 40 40 H 1.08996 * 109.47310 * 310.00258 * 15 5 4 41 41 H 1.08006 * 119.52471 * 0.02562 * 17 16 15 42 42 H 1.08007 * 119.49456 * 179.97438 * 18 17 16 43 43 H 0.96710 * 113.99906 * 269.97997 * 20 19 18 44 44 H 1.08005 * 119.12968 * 180.28578 * 23 22 21 45 45 H 1.07996 * 120.03880 * 179.73879 * 24 23 22 46 46 H 1.08003 * 120.92254 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0597 2.8273 -0.0169 6 6 3.8394 3.4471 -1.3303 7 6 4.5835 2.6683 -2.3844 8 1 5.1015 1.7587 -2.1187 9 6 4.6031 3.1172 -3.6879 10 7 3.9727 4.2252 -4.0113 11 14 5.5248 2.1517 -4.9945 12 1 4.9541 0.7843 -5.0945 13 1 5.3937 2.8402 -6.3036 14 1 6.9602 2.0630 -4.6241 15 6 5.4772 2.8893 0.3633 16 6 5.8787 4.3266 0.5732 17 6 6.5474 4.9995 -0.4041 18 6 6.9258 6.3275 -0.2284 19 6 6.6381 6.9938 0.9288 20 8 7.0148 8.2898 1.0824 21 6 5.9477 6.3287 1.9634 22 7 5.6562 6.9510 3.1091 23 6 5.0101 6.3391 4.0717 24 6 4.6063 5.0107 3.9545 25 6 4.8774 4.3145 2.8112 26 6 5.5657 4.9774 1.7774 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 3.9337 0.9172 -0.8825 35 1 3.9329 0.9401 0.8973 36 1 2.7738 3.4427 -1.5600 37 1 4.2031 4.4744 -1.3130 38 1 3.9861 4.5409 -4.9285 39 1 6.0855 2.4543 -0.4297 40 1 5.6305 2.3307 1.2867 41 1 6.7868 4.4957 -1.3290 42 1 7.4557 6.8385 -1.0187 43 1 7.8935 8.4006 1.4709 44 1 4.7889 6.8776 4.9814 45 1 4.0790 4.5323 4.7665 46 1 4.5723 3.2841 2.7033 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001232278409.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:08 Heat of formation + Delta-G solvation = -18.297786 kcal Electronic energy + Delta-G solvation = -26490.763721 eV Core-core repulsion = 22958.080690 eV Total energy + Delta-G solvation = -3532.683031 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -41.95193 -39.22481 -38.93377 -37.20033 -35.47636 -34.50988 -33.69896 -31.53464 -31.18561 -29.69849 -28.48324 -26.10068 -25.18459 -24.78656 -24.53887 -22.59986 -21.57186 -21.14776 -19.42624 -19.01465 -18.44713 -17.94154 -17.16977 -16.74292 -16.50764 -16.15710 -15.76008 -15.65530 -15.34187 -15.19399 -14.83302 -14.49465 -14.30660 -14.16613 -13.97363 -13.65310 -13.55994 -13.07532 -12.97576 -12.95358 -12.73846 -12.48798 -12.39688 -12.24401 -11.98794 -11.98287 -11.81286 -11.59488 -11.54670 -11.44777 -11.26547 -11.16796 -10.54636 -10.38965 -9.70611 -9.06003 -8.82076 -8.09853 -6.28277 -0.53099 -0.09569 1.01852 1.36980 1.37637 1.45002 1.99344 2.38349 3.05467 3.14387 3.15263 3.38070 3.52363 3.79927 3.91801 4.01264 4.10728 4.14687 4.21042 4.26469 4.37863 4.48666 4.52837 4.57124 4.64190 4.73547 4.82634 4.92350 4.98802 5.02859 5.05742 5.12552 5.14283 5.19186 5.20499 5.29639 5.35171 5.39570 5.42892 5.52911 5.58370 5.58927 5.71307 5.82225 5.90763 6.10468 6.29574 6.58842 6.76881 6.92738 7.04050 7.42066 8.91715 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.009898 B = 0.005311 C = 0.003707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2828.249399 B = 5270.448936 C = 7551.850443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.116 4.116 3 C -0.103 4.103 4 C 0.060 3.940 5 N -0.533 5.533 6 C 0.206 3.794 7 C -0.542 4.542 8 H 0.059 0.941 9 C 0.017 3.983 10 N -0.925 5.925 11 Si 0.945 3.055 12 H -0.272 1.272 13 H -0.288 1.288 14 H -0.268 1.268 15 C 0.100 3.900 16 C -0.052 4.052 17 C -0.100 4.100 18 C -0.130 4.130 19 C 0.110 3.890 20 O -0.491 6.491 21 C 0.077 3.923 22 N -0.495 5.495 23 C 0.121 3.879 24 C -0.169 4.169 25 C -0.050 4.050 26 C -0.086 4.086 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.039 0.961 30 H 0.048 0.952 31 H 0.078 0.922 32 H 0.065 0.935 33 H 0.029 0.971 34 H 0.025 0.975 35 H 0.083 0.917 36 H -0.004 1.004 37 H 0.006 0.994 38 H 0.261 0.739 39 H 0.038 0.962 40 H 0.095 0.905 41 H 0.117 0.883 42 H 0.142 0.858 43 H 0.404 0.596 44 H 0.192 0.808 45 H 0.176 0.824 46 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.660 -3.401 16.123 16.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.154 4.154 3 C -0.141 4.141 4 C -0.068 4.068 5 N -0.255 5.255 6 C 0.079 3.921 7 C -0.581 4.581 8 H 0.077 0.923 9 C -0.183 4.183 10 N -0.565 5.565 11 Si 0.771 3.229 12 H -0.197 1.197 13 H -0.214 1.214 14 H -0.193 1.193 15 C -0.027 4.027 16 C -0.054 4.054 17 C -0.119 4.119 18 C -0.150 4.150 19 C 0.064 3.936 20 O -0.303 6.303 21 C -0.044 4.044 22 N -0.204 5.204 23 C -0.052 4.052 24 C -0.188 4.188 25 C -0.076 4.076 26 C -0.089 4.089 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.048 0.952 34 H 0.043 0.957 35 H 0.101 0.899 36 H 0.014 0.986 37 H 0.024 0.976 38 H 0.070 0.930 39 H 0.056 0.944 40 H 0.113 0.887 41 H 0.135 0.865 42 H 0.160 0.840 43 H 0.263 0.737 44 H 0.209 0.791 45 H 0.193 0.807 46 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 2.127 -2.009 16.081 16.345 hybrid contribution 0.995 -1.307 -2.204 2.748 sum 3.122 -3.316 13.878 14.606 Atomic orbital electron populations 1.21736 0.95283 1.01994 1.01507 1.21438 0.96333 0.95640 1.01979 1.21441 0.94785 0.97054 1.00813 1.22063 0.95606 0.88944 1.00208 1.62503 1.15508 1.17699 1.29830 1.19321 0.94396 0.93949 0.84416 1.21852 1.32671 1.09250 0.94371 0.92265 1.25684 0.96265 0.95625 1.00682 1.70081 1.44052 1.23102 1.19269 0.85808 0.79577 0.78972 0.78558 1.19679 1.21413 1.19285 1.20904 0.90058 0.91433 1.00320 1.19716 0.96110 0.96920 0.92629 1.20783 0.98286 0.94272 0.98609 1.21212 1.01512 0.94399 0.97859 1.17928 0.98967 0.84244 0.92433 1.84744 1.40299 1.20223 1.85070 1.19334 1.00429 0.91182 0.93492 1.67992 1.14072 1.37659 1.00640 1.23628 0.91385 0.92874 0.97274 1.22279 1.01485 0.95725 0.99352 1.21746 0.93138 1.01247 0.91448 1.18727 1.00317 0.93873 0.95964 0.91485 0.92100 0.94214 0.93269 0.90377 0.91623 0.95207 0.95695 0.89908 0.98599 0.97573 0.92973 0.94385 0.88672 0.86465 0.83992 0.73744 0.79115 0.80707 0.82802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.39 9.91 71.98 0.71 -2.67 16 2 C -0.12 -2.99 5.93 30.59 0.18 -2.81 16 3 C -0.10 -3.35 5.28 30.60 0.16 -3.19 16 4 C 0.06 2.05 4.80 86.30 0.41 2.47 16 5 N -0.53 -21.05 4.66 -905.40 -4.22 -25.27 16 6 C 0.21 10.45 4.73 85.56 0.40 10.85 16 7 C -0.54 -28.55 7.34 25.60 0.19 -28.36 16 8 H 0.06 3.03 5.95 -2.91 -0.02 3.01 16 9 C 0.02 0.92 5.46 84.65 0.46 1.39 16 10 N -0.93 -54.78 13.29 21.45 0.28 -54.50 16 11 Si 0.95 43.04 29.54 68.60 2.03 45.06 16 12 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 13 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 14 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 15 C 0.10 3.57 4.19 85.56 0.36 3.92 16 16 C -0.05 -1.93 4.60 -19.81 -0.09 -2.02 16 17 C -0.10 -3.90 8.52 22.03 0.19 -3.71 16 18 C -0.13 -4.60 9.87 22.12 0.22 -4.38 16 19 C 0.11 3.84 6.71 22.57 0.15 3.99 16 20 O -0.49 -15.08 13.29 -91.75 -1.22 -16.30 16 21 C 0.08 2.70 6.62 40.41 0.27 2.96 16 22 N -0.50 -15.65 10.13 -188.34 -1.91 -17.56 16 23 C 0.12 2.81 11.15 85.07 0.95 3.76 16 24 C -0.17 -3.54 10.03 22.15 0.22 -3.32 16 25 C -0.05 -1.34 9.37 22.50 0.21 -1.13 16 26 C -0.09 -2.94 5.74 -21.28 -0.12 -3.06 16 27 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.03 1.19 6.74 -2.39 -0.02 1.17 16 34 H 0.02 0.98 6.12 -2.39 -0.01 0.97 16 35 H 0.08 2.28 7.81 -2.38 -0.02 2.26 16 36 H 0.00 -0.23 6.68 -2.38 -0.02 -0.25 16 37 H 0.01 0.35 6.45 -2.39 -0.02 0.33 16 38 H 0.26 14.82 8.31 -92.70 -0.77 14.04 16 39 H 0.04 1.49 6.46 -2.39 -0.02 1.48 16 40 H 0.10 2.71 6.72 -2.39 -0.02 2.69 16 41 H 0.12 4.93 8.00 -2.91 -0.02 4.91 16 42 H 0.14 4.49 8.06 -2.91 -0.02 4.46 16 43 H 0.40 8.08 9.06 -74.05 -0.67 7.41 16 44 H 0.19 2.80 8.06 -2.91 -0.02 2.78 16 45 H 0.18 2.14 8.06 -2.91 -0.02 2.12 16 46 H 0.15 3.67 6.68 -2.91 -0.02 3.66 16 Total: -1.00 -69.28 370.47 0.16 -69.11 By element: Atomic # 1 Polarization: 24.45 SS G_CDS: 0.32 Total: 24.77 kcal Atomic # 6 Polarization: -30.20 SS G_CDS: 4.88 Total: -25.32 kcal Atomic # 7 Polarization: -91.48 SS G_CDS: -5.84 Total: -97.32 kcal Atomic # 8 Polarization: -15.08 SS G_CDS: -1.22 Total: -16.30 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.06 kcal Total: -69.28 0.16 -69.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232278409.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.816 kcal (2) G-P(sol) polarization free energy of solvation -69.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds