Wall clock time and date at job start Tue Mar 31 2020 10:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35620 * 116.99998 * 2 1 4 4 C 1.38496 * 120.08788 * 359.97317 * 3 2 1 5 5 C 1.38069 * 120.29795 * 180.02562 * 4 3 2 6 6 C 1.39901 * 120.47679 * 0.04514 * 5 4 3 7 7 C 1.48482 * 119.91522 * 179.97438 * 6 5 4 8 8 C 1.40840 * 126.22036 * 180.02562 * 7 6 5 9 9 N 1.30679 * 108.10573 * 179.97438 * 8 7 6 10 10 N 1.40013 * 108.52179 * 0.02562 * 9 8 7 11 11 C 1.46498 * 125.89042 * 180.02562 * 10 9 8 12 12 C 1.52998 * 109.47432 * 304.96994 * 11 10 9 13 13 C 1.53003 * 109.47340 * 180.02562 * 12 11 10 14 14 C 1.53004 * 109.46919 * 65.00164 * 13 12 11 15 15 C 1.52995 * 109.47481 * 185.00075 * 13 12 11 16 16 C 1.34855 * 108.20860 * 359.73011 * 10 9 8 17 17 C 1.38543 * 120.16577 * 359.70026 * 6 5 4 18 18 C 1.40553 * 119.69621 * 0.52837 * 17 6 5 19 19 C 1.41170 * 120.22802 * 179.76887 * 18 17 6 20 20 H 1.07997 * 119.99656 * 154.51104 * 19 18 17 21 21 C 1.39903 * 120.00260 * 334.79201 * 19 18 17 22 22 N 1.30889 * 119.99806 * 341.91638 * 21 19 18 23 23 Si 1.86794 * 120.00304 * 161.91777 * 21 19 18 24 24 H 1.48505 * 109.46935 * 94.51374 * 23 21 19 25 25 H 1.48492 * 109.47264 * 214.51768 * 23 21 19 26 26 H 1.48504 * 109.46889 * 334.52007 * 23 21 19 27 27 H 1.08990 * 109.47173 * 60.00629 * 1 2 3 28 28 H 1.09000 * 109.47025 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46898 * 300.00150 * 1 2 3 30 30 H 1.07992 * 119.85064 * 0.02562 * 4 3 2 31 31 H 1.07996 * 119.76014 * 180.02562 * 5 4 3 32 32 H 1.08002 * 125.94612 * 0.02562 * 8 7 6 33 33 H 1.09004 * 109.47744 * 64.97408 * 11 10 9 34 34 H 1.09004 * 109.47131 * 184.97186 * 11 10 9 35 35 H 1.08993 * 109.47252 * 300.00440 * 12 11 10 36 36 H 1.09004 * 109.46872 * 60.00778 * 12 11 10 37 37 H 1.08994 * 109.47126 * 305.00358 * 13 12 11 38 38 H 1.09004 * 109.46973 * 60.00227 * 14 13 12 39 39 H 1.08997 * 109.47195 * 179.97438 * 14 13 12 40 40 H 1.09000 * 109.47291 * 300.00472 * 14 13 12 41 41 H 1.09000 * 109.46839 * 59.99722 * 15 13 12 42 42 H 1.08997 * 109.47456 * 180.02562 * 15 13 12 43 43 H 1.09005 * 109.46884 * 300.00672 * 15 13 12 44 44 H 1.07999 * 126.19963 * 180.26808 * 16 10 9 45 45 H 1.07995 * 120.14929 * 180.27414 * 17 6 5 46 46 H 0.96995 * 119.99711 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0448 1.2084 0.0000 4 6 1.2922 2.3711 -0.0006 5 6 1.9146 3.6036 -0.0011 6 6 3.3107 3.6935 -0.0020 7 6 3.9669 5.0255 -0.0032 8 6 5.3539 5.2698 -0.0047 9 7 5.5384 6.5635 -0.0059 10 7 4.2868 7.1912 -0.0046 11 6 4.0512 8.6372 -0.0058 12 6 4.7870 9.2749 1.1743 13 6 4.5404 10.7849 1.1733 14 6 3.0565 11.0594 1.4255 15 6 5.3747 11.4387 2.2767 16 6 3.3358 6.2351 -0.0086 17 6 4.0824 2.5430 0.0038 18 6 3.4564 1.2846 -0.0005 19 6 4.2319 0.1050 0.0005 20 1 3.8216 -0.8107 0.4000 21 6 5.5341 0.1234 -0.5107 22 7 5.9147 1.0982 -1.2969 23 14 6.7295 -1.2430 -0.0712 24 1 6.6982 -2.2867 -1.1272 25 1 8.1018 -0.6855 0.0334 26 1 6.3386 -1.8432 1.2297 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 0.2139 2.3134 -0.0006 31 1 1.3193 4.5046 -0.0011 32 1 6.1300 4.5188 -0.0056 33 1 4.4203 9.0647 -0.9381 34 1 2.9824 8.8312 0.0847 35 1 4.4179 8.8474 2.1065 36 1 5.8558 9.0809 1.0837 37 1 4.8274 11.1993 0.2070 38 1 2.7695 10.6450 2.3920 39 1 2.8808 12.1351 1.4253 40 1 2.4621 10.5936 0.6395 41 1 6.4318 11.2430 2.0970 42 1 5.1986 12.5143 2.2763 43 1 5.0876 11.0242 3.2431 44 1 2.2681 6.3974 -0.0129 45 1 5.1601 2.6127 0.0076 46 1 6.8174 1.1108 -1.6516 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240418258.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:57 Heat of formation + Delta-G solvation = 37.696614 kcal Electronic energy + Delta-G solvation = -25194.976295 eV Core-core repulsion = 21664.721364 eV Total energy + Delta-G solvation = -3530.254932 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.66531 -38.52675 -37.20033 -36.02249 -33.70498 -32.89834 -30.61234 -29.58330 -29.19687 -27.49978 -27.15886 -26.27562 -24.96166 -23.82445 -21.42979 -21.30215 -20.28606 -19.70719 -19.19381 -17.39436 -16.53763 -16.39795 -15.57743 -15.14818 -15.13105 -14.60919 -14.50036 -14.34222 -14.08818 -13.68124 -13.48996 -13.08736 -12.82863 -12.70300 -12.53098 -12.47937 -12.11850 -11.98204 -11.74241 -11.62648 -11.41680 -11.25158 -11.09320 -11.02173 -10.96801 -10.81849 -10.76154 -10.40864 -10.21037 -10.08194 -9.73035 -9.35551 -9.10939 -8.94124 -8.24981 -7.41917 -6.73103 -6.37672 -4.17790 2.17880 2.72256 2.85729 2.87980 3.14853 3.17795 3.24012 3.82099 4.02985 4.42015 4.55363 4.56444 4.64210 4.76788 4.83931 5.06651 5.20563 5.25780 5.34150 5.39416 5.47213 5.55949 5.59089 5.68469 5.74212 5.75550 5.79013 5.87550 5.91711 5.96047 6.03523 6.07028 6.11585 6.19606 6.33644 6.36532 6.45109 6.91321 7.14392 7.18346 7.33264 7.44357 7.48758 7.74673 7.81165 8.06643 8.20575 8.30004 8.45634 8.76793 8.91937 9.13013 10.28667 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.015099 B = 0.003053 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.997811 B = 9169.531446 C =10726.438182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.312 6.312 3 C 0.011 3.989 4 C -0.176 4.176 5 C -0.203 4.203 6 C -0.022 4.022 7 C -0.154 4.154 8 C 0.063 3.937 9 N -0.307 5.307 10 N -0.382 5.382 11 C 0.139 3.861 12 C -0.126 4.126 13 C -0.095 4.095 14 C -0.152 4.152 15 C -0.146 4.146 16 C 0.038 3.962 17 C -0.132 4.132 18 C 0.099 3.901 19 C -0.446 4.446 20 H 0.081 0.919 21 C 0.075 3.925 22 N -0.796 5.796 23 Si 0.905 3.095 24 H -0.272 1.272 25 H -0.276 1.276 26 H -0.261 1.261 27 H 0.039 0.961 28 H 0.080 0.920 29 H 0.038 0.962 30 H 0.095 0.905 31 H 0.088 0.912 32 H 0.184 0.816 33 H 0.077 0.923 34 H 0.091 0.909 35 H 0.068 0.932 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.056 0.944 39 H 0.055 0.945 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.054 0.946 43 H 0.055 0.945 44 H 0.167 0.833 45 H 0.127 0.873 46 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.921 14.677 3.356 15.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.227 6.227 3 C -0.033 4.033 4 C -0.195 4.195 5 C -0.223 4.223 6 C -0.024 4.024 7 C -0.165 4.165 8 C -0.123 4.123 9 N -0.128 5.128 10 N -0.165 5.165 11 C 0.017 3.983 12 C -0.165 4.165 13 C -0.114 4.114 14 C -0.210 4.210 15 C -0.204 4.204 16 C -0.106 4.106 17 C -0.152 4.152 18 C 0.096 3.904 19 C -0.476 4.476 20 H 0.099 0.901 21 C -0.142 4.142 22 N -0.422 5.422 23 Si 0.730 3.270 24 H -0.197 1.197 25 H -0.201 1.201 26 H -0.185 1.185 27 H 0.058 0.942 28 H 0.099 0.901 29 H 0.057 0.943 30 H 0.113 0.887 31 H 0.106 0.894 32 H 0.201 0.799 33 H 0.095 0.905 34 H 0.109 0.891 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.090 0.910 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.184 0.816 45 H 0.144 0.856 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -2.796 15.670 3.210 16.238 hybrid contribution -0.462 -1.059 -0.008 1.155 sum -3.259 14.611 3.202 15.309 Atomic orbital electron populations 1.22718 0.81902 1.01629 0.99851 1.85958 1.18078 1.28394 1.90226 1.19294 0.92396 0.82540 1.09112 1.20497 0.97240 0.92799 1.09004 1.20010 0.92946 0.95075 1.14234 1.17753 0.92189 0.89612 1.02835 1.19195 0.92343 0.93062 1.11919 1.24038 0.96832 0.92759 0.98715 1.77089 1.02286 1.07914 1.25496 1.48348 1.04030 1.05549 1.58535 1.21656 1.01094 0.75786 0.99769 1.21935 1.02070 0.94389 0.98059 1.21080 0.95848 0.94747 0.99718 1.21942 0.95576 1.01508 1.01940 1.21817 0.99874 1.00187 0.98503 1.22390 0.95217 0.88435 1.04603 1.21053 0.99326 0.89509 1.05335 1.16958 0.87250 0.93915 0.92245 1.19378 0.96726 0.96655 1.34852 0.90054 1.25860 0.98809 0.96761 0.92787 1.69853 1.19195 1.30887 1.22268 0.86346 0.79327 0.81215 0.80123 1.19731 1.20128 1.18497 0.94213 0.90138 0.94308 0.88663 0.89431 0.79925 0.90487 0.89087 0.91356 0.90347 0.90953 0.92480 0.92613 0.92501 0.92523 0.92657 0.92621 0.81554 0.85561 0.90996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.60 9.81 101.05 0.99 1.59 16 2 O -0.31 -7.29 9.77 -18.56 -0.18 -7.47 16 3 C 0.01 0.27 6.72 -38.30 -0.26 0.02 16 4 C -0.18 -3.95 9.01 -39.55 -0.36 -4.31 16 5 C -0.20 -4.44 9.56 -39.02 -0.37 -4.81 16 6 C -0.02 -0.52 5.87 -104.94 -0.62 -1.13 16 7 C -0.15 -3.15 6.04 -105.34 -0.64 -3.78 16 8 C 0.06 1.25 11.41 -17.06 -0.19 1.05 16 9 N -0.31 -5.67 12.38 30.80 0.38 -5.29 16 10 N -0.38 -6.05 3.67 -61.09 -0.22 -6.28 16 11 C 0.14 1.54 6.26 -4.04 -0.03 1.51 16 12 C -0.13 -1.29 4.86 -26.73 -0.13 -1.42 16 13 C -0.09 -0.73 2.92 -90.62 -0.26 -1.00 16 14 C -0.15 -1.05 8.95 37.16 0.33 -0.72 16 15 C -0.15 -1.08 9.19 37.16 0.34 -0.74 16 16 C 0.04 0.64 10.83 -16.87 -0.18 0.46 16 17 C -0.13 -3.38 8.20 -38.60 -0.32 -3.70 16 18 C 0.10 2.67 5.57 -106.72 -0.59 2.07 16 19 C -0.45 -12.08 8.70 -37.85 -0.33 -12.41 16 20 H 0.08 2.20 7.65 -52.49 -0.40 1.80 16 21 C 0.07 1.89 5.12 -17.33 -0.09 1.80 16 22 N -0.80 -20.47 11.02 55.55 0.61 -19.86 16 23 Si 0.91 19.03 29.59 -169.99 -5.03 14.00 16 24 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 25 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 26 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 27 H 0.04 0.64 7.65 -51.93 -0.40 0.24 16 28 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 29 H 0.04 0.61 7.66 -51.93 -0.40 0.21 16 30 H 0.10 1.85 6.27 -52.49 -0.33 1.52 16 31 H 0.09 1.66 6.98 -52.49 -0.37 1.29 16 32 H 0.18 3.52 7.33 -52.49 -0.38 3.14 16 33 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.09 0.81 6.49 -51.93 -0.34 0.47 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.06 0.37 6.56 -51.93 -0.34 0.03 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.17 2.35 7.26 -52.49 -0.38 1.97 16 45 H 0.13 3.27 5.18 -52.49 -0.27 3.00 16 46 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 LS Contribution 375.53 15.07 5.66 5.66 Total: -1.00 -30.12 375.53 -8.45 -38.58 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -6.97 Total: 6.17 kcal Atomic # 6 Polarization: -22.82 SS G_CDS: -2.70 Total: -25.52 kcal Atomic # 7 Polarization: -32.20 SS G_CDS: 0.77 Total: -31.43 kcal Atomic # 8 Polarization: -7.29 SS G_CDS: -0.18 Total: -7.47 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.03 Total: 14.00 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.12 -8.45 -38.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240418258.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.274 kcal (2) G-P(sol) polarization free energy of solvation -30.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds