Wall clock time and date at job start Tue Mar 31 2020 10:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35620 * 116.99998 * 2 1 4 4 C 1.38496 * 120.08788 * 359.97317 * 3 2 1 5 5 C 1.38069 * 120.29795 * 180.02562 * 4 3 2 6 6 C 1.39901 * 120.47679 * 0.04514 * 5 4 3 7 7 C 1.48482 * 119.91522 * 179.97438 * 6 5 4 8 8 C 1.40840 * 126.22036 * 180.02562 * 7 6 5 9 9 N 1.30679 * 108.10573 * 179.97438 * 8 7 6 10 10 N 1.40013 * 108.52179 * 0.02562 * 9 8 7 11 11 C 1.46498 * 125.89042 * 180.02562 * 10 9 8 12 12 C 1.52998 * 109.47432 * 304.96994 * 11 10 9 13 13 C 1.53003 * 109.47340 * 180.02562 * 12 11 10 14 14 C 1.53004 * 109.46919 * 65.00164 * 13 12 11 15 15 C 1.52995 * 109.47481 * 185.00075 * 13 12 11 16 16 C 1.34855 * 108.20860 * 359.73011 * 10 9 8 17 17 C 1.38543 * 120.16577 * 359.70026 * 6 5 4 18 18 C 1.40553 * 119.69621 * 0.52837 * 17 6 5 19 19 C 1.41170 * 120.22802 * 179.76887 * 18 17 6 20 20 H 1.07997 * 119.99656 * 154.51104 * 19 18 17 21 21 C 1.39903 * 120.00260 * 334.79201 * 19 18 17 22 22 N 1.30889 * 119.99806 * 341.91638 * 21 19 18 23 23 Si 1.86794 * 120.00304 * 161.91777 * 21 19 18 24 24 H 1.48505 * 109.46935 * 94.51374 * 23 21 19 25 25 H 1.48492 * 109.47264 * 214.51768 * 23 21 19 26 26 H 1.48504 * 109.46889 * 334.52007 * 23 21 19 27 27 H 1.08990 * 109.47173 * 60.00629 * 1 2 3 28 28 H 1.09000 * 109.47025 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46898 * 300.00150 * 1 2 3 30 30 H 1.07992 * 119.85064 * 0.02562 * 4 3 2 31 31 H 1.07996 * 119.76014 * 180.02562 * 5 4 3 32 32 H 1.08002 * 125.94612 * 0.02562 * 8 7 6 33 33 H 1.09004 * 109.47744 * 64.97408 * 11 10 9 34 34 H 1.09004 * 109.47131 * 184.97186 * 11 10 9 35 35 H 1.08993 * 109.47252 * 300.00440 * 12 11 10 36 36 H 1.09004 * 109.46872 * 60.00778 * 12 11 10 37 37 H 1.08994 * 109.47126 * 305.00358 * 13 12 11 38 38 H 1.09004 * 109.46973 * 60.00227 * 14 13 12 39 39 H 1.08997 * 109.47195 * 179.97438 * 14 13 12 40 40 H 1.09000 * 109.47291 * 300.00472 * 14 13 12 41 41 H 1.09000 * 109.46839 * 59.99722 * 15 13 12 42 42 H 1.08997 * 109.47456 * 180.02562 * 15 13 12 43 43 H 1.09005 * 109.46884 * 300.00672 * 15 13 12 44 44 H 1.07999 * 126.19963 * 180.26808 * 16 10 9 45 45 H 1.07995 * 120.14929 * 180.27414 * 17 6 5 46 46 H 0.96995 * 119.99711 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0448 1.2084 0.0000 4 6 1.2922 2.3711 -0.0006 5 6 1.9146 3.6036 -0.0011 6 6 3.3107 3.6935 -0.0020 7 6 3.9669 5.0255 -0.0032 8 6 5.3539 5.2698 -0.0047 9 7 5.5384 6.5635 -0.0059 10 7 4.2868 7.1912 -0.0046 11 6 4.0512 8.6372 -0.0058 12 6 4.7870 9.2749 1.1743 13 6 4.5404 10.7849 1.1733 14 6 3.0565 11.0594 1.4255 15 6 5.3747 11.4387 2.2767 16 6 3.3358 6.2351 -0.0086 17 6 4.0824 2.5430 0.0038 18 6 3.4564 1.2846 -0.0005 19 6 4.2319 0.1050 0.0005 20 1 3.8216 -0.8107 0.4000 21 6 5.5341 0.1234 -0.5107 22 7 5.9147 1.0982 -1.2969 23 14 6.7295 -1.2430 -0.0712 24 1 6.6982 -2.2867 -1.1272 25 1 8.1018 -0.6855 0.0334 26 1 6.3386 -1.8432 1.2297 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 0.2139 2.3134 -0.0006 31 1 1.3193 4.5046 -0.0011 32 1 6.1300 4.5188 -0.0056 33 1 4.4203 9.0647 -0.9381 34 1 2.9824 8.8312 0.0847 35 1 4.4179 8.8474 2.1065 36 1 5.8558 9.0809 1.0837 37 1 4.8274 11.1993 0.2070 38 1 2.7695 10.6450 2.3920 39 1 2.8808 12.1351 1.4253 40 1 2.4621 10.5936 0.6395 41 1 6.4318 11.2430 2.0970 42 1 5.1986 12.5143 2.2763 43 1 5.0876 11.0242 3.2431 44 1 2.2681 6.3974 -0.0129 45 1 5.1601 2.6127 0.0076 46 1 6.8174 1.1108 -1.6516 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240418258.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:55 Heat of formation + Delta-G solvation = 22.407899 kcal Electronic energy + Delta-G solvation = -25195.639264 eV Core-core repulsion = 21664.721364 eV Total energy + Delta-G solvation = -3530.917900 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.06267 -40.25346 -38.06672 -37.62939 -35.52430 -34.05783 -32.26100 -31.34982 -30.39139 -28.60088 -28.01970 -27.82182 -26.75221 -24.86969 -23.01227 -22.96893 -21.19451 -21.02107 -20.65802 -19.14842 -18.17024 -17.89915 -16.92461 -16.40797 -16.23667 -16.13043 -16.12090 -15.58135 -15.41531 -14.68443 -14.58483 -14.46900 -14.38227 -14.17572 -13.73827 -13.55094 -13.40058 -13.16097 -13.11774 -12.91124 -12.77009 -12.70100 -12.43296 -12.36384 -12.07758 -11.97355 -11.81066 -11.64712 -11.60636 -11.51301 -11.31615 -11.10616 -10.97464 -10.29607 -9.80489 -9.29855 -8.58761 -8.07882 -6.14423 0.66574 1.05309 1.15073 1.40108 1.49063 1.55440 1.66690 2.16173 2.27236 2.90481 3.00409 3.50424 3.82373 3.84367 3.93933 3.99137 4.08886 4.22056 4.34953 4.37317 4.44782 4.49435 4.54275 4.59238 4.71476 4.74403 4.75895 4.78803 4.83988 4.88326 4.92908 5.02883 5.07166 5.11030 5.15525 5.29120 5.30780 5.43486 5.47998 5.49570 5.61272 5.69217 5.94000 5.96865 6.19909 6.28429 6.40627 6.60019 6.77448 6.90142 7.00986 7.32374 8.43766 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.015099 B = 0.003053 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.997811 B = 9169.531446 C =10726.438182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.342 6.342 3 C -0.007 4.007 4 C -0.177 4.177 5 C -0.195 4.195 6 C -0.025 4.025 7 C -0.196 4.196 8 C 0.046 3.954 9 N -0.320 5.320 10 N -0.369 5.369 11 C 0.127 3.873 12 C -0.119 4.119 13 C -0.089 4.089 14 C -0.152 4.152 15 C -0.148 4.148 16 C 0.066 3.934 17 C -0.155 4.155 18 C 0.059 3.941 19 C -0.486 4.486 20 H 0.066 0.934 21 C 0.036 3.964 22 N -0.826 5.826 23 Si 0.974 3.026 24 H -0.265 1.265 25 H -0.265 1.265 26 H -0.263 1.263 27 H 0.050 0.950 28 H 0.108 0.892 29 H 0.053 0.947 30 H 0.130 0.870 31 H 0.128 0.872 32 H 0.170 0.830 33 H 0.090 0.910 34 H 0.126 0.874 35 H 0.057 0.943 36 H 0.056 0.944 37 H 0.081 0.919 38 H 0.052 0.948 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.049 0.951 42 H 0.068 0.932 43 H 0.050 0.950 44 H 0.207 0.793 45 H 0.109 0.891 46 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.042 17.132 3.377 18.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.257 6.257 3 C -0.052 4.052 4 C -0.196 4.196 5 C -0.215 4.215 6 C -0.027 4.027 7 C -0.207 4.207 8 C -0.139 4.139 9 N -0.142 5.142 10 N -0.151 5.151 11 C 0.008 3.992 12 C -0.158 4.158 13 C -0.108 4.108 14 C -0.209 4.209 15 C -0.205 4.205 16 C -0.081 4.081 17 C -0.175 4.175 18 C 0.057 3.943 19 C -0.516 4.516 20 H 0.084 0.916 21 C -0.177 4.177 22 N -0.453 5.453 23 Si 0.795 3.205 24 H -0.190 1.190 25 H -0.189 1.189 26 H -0.187 1.187 27 H 0.069 0.931 28 H 0.127 0.873 29 H 0.072 0.928 30 H 0.147 0.853 31 H 0.146 0.854 32 H 0.187 0.813 33 H 0.108 0.892 34 H 0.143 0.857 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.099 0.901 38 H 0.071 0.929 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.068 0.932 42 H 0.087 0.913 43 H 0.069 0.931 44 H 0.224 0.776 45 H 0.127 0.873 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.920 18.156 3.232 19.087 hybrid contribution 0.031 -1.595 -0.003 1.595 sum -4.890 16.561 3.228 17.567 Atomic orbital electron populations 1.23070 0.78751 1.04046 1.00987 1.85900 1.21426 1.28141 1.90281 1.19494 0.92252 0.84050 1.09364 1.20877 0.98910 0.92047 1.07756 1.20494 0.92649 0.96494 1.11834 1.18021 0.93022 0.90157 1.01465 1.19168 0.92710 0.93225 1.15642 1.23939 0.96944 0.93250 0.99813 1.77050 1.03967 1.07259 1.25885 1.48787 1.02964 1.07265 1.56061 1.22170 1.03478 0.72861 1.00707 1.21855 1.00504 0.96215 0.97178 1.21046 0.96803 0.92641 1.00270 1.21943 0.94583 1.02346 1.02013 1.21831 0.99465 1.01011 0.98214 1.22846 0.96809 0.87221 1.01217 1.21008 0.98916 0.90417 1.07176 1.17367 0.88936 0.94433 0.93596 1.19461 0.98452 0.96518 1.37210 0.91602 1.26594 0.99799 0.99183 0.92167 1.69906 1.19808 1.32552 1.23067 0.85326 0.77296 0.78271 0.79602 1.19036 1.18887 1.18702 0.93116 0.87330 0.92806 0.85251 0.85387 0.81253 0.89157 0.85656 0.92398 0.92516 0.90077 0.92903 0.91583 0.91608 0.93185 0.91338 0.93058 0.77634 0.87348 0.90461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.86 9.81 113.37 1.11 1.97 16 2 O -0.34 -16.20 9.77 -89.32 -0.87 -17.08 16 3 C -0.01 -0.36 6.72 23.10 0.16 -0.20 16 4 C -0.18 -7.66 9.01 22.29 0.20 -7.46 16 5 C -0.20 -8.14 9.56 22.63 0.22 -7.92 16 6 C -0.03 -1.17 5.87 -20.07 -0.12 -1.29 16 7 C -0.20 -7.93 6.04 -20.33 -0.12 -8.05 16 8 C 0.05 1.87 11.41 85.50 0.98 2.85 16 9 N -0.32 -11.74 12.38 -56.46 -0.70 -12.44 16 10 N -0.37 -10.80 3.67 -347.20 -1.27 -12.08 16 11 C 0.13 2.39 6.26 86.38 0.54 2.93 16 12 C -0.12 -2.19 4.86 30.59 0.15 -2.04 16 13 C -0.09 -1.13 2.92 -10.79 -0.03 -1.16 16 14 C -0.15 -1.56 8.95 71.98 0.64 -0.91 16 15 C -0.15 -1.91 9.19 71.98 0.66 -1.25 16 16 C 0.07 2.04 10.83 83.81 0.91 2.94 16 17 C -0.15 -8.34 8.20 22.91 0.19 -8.16 16 18 C 0.06 3.34 5.57 -21.22 -0.12 3.22 16 19 C -0.49 -27.99 8.70 23.39 0.20 -27.79 16 20 H 0.07 3.82 7.65 -2.91 -0.02 3.79 16 21 C 0.04 1.93 5.12 85.24 0.44 2.36 16 22 N -0.83 -44.91 11.02 21.82 0.24 -44.67 16 23 Si 0.97 40.81 29.59 68.60 2.03 42.84 16 24 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 25 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 26 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 27 H 0.05 1.52 7.65 -2.39 -0.02 1.50 16 28 H 0.11 2.85 8.14 -2.39 -0.02 2.83 16 29 H 0.05 1.57 7.66 -2.39 -0.02 1.56 16 30 H 0.13 4.59 6.27 -2.91 -0.02 4.57 16 31 H 0.13 4.22 6.98 -2.91 -0.02 4.20 16 32 H 0.17 7.13 7.33 -2.91 -0.02 7.11 16 33 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 34 H 0.13 1.56 6.49 -2.38 -0.02 1.55 16 35 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 40 H 0.06 0.56 6.56 -2.39 -0.02 0.54 16 41 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.05 0.70 8.14 -2.38 -0.02 0.68 16 44 H 0.21 4.62 7.26 -2.91 -0.02 4.60 16 45 H 0.11 6.08 5.18 -2.91 -0.02 6.06 16 46 H 0.28 14.07 8.30 -92.71 -0.77 13.30 16 Total: -1.00 -70.10 375.53 6.40 -63.71 By element: Atomic # 1 Polarization: 28.71 SS G_CDS: 0.97 Total: 29.68 kcal Atomic # 6 Polarization: -55.96 SS G_CDS: 6.00 Total: -49.96 kcal Atomic # 7 Polarization: -67.46 SS G_CDS: -1.73 Total: -69.19 kcal Atomic # 8 Polarization: -16.20 SS G_CDS: -0.87 Total: -17.08 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 2.03 Total: 42.84 kcal Total: -70.10 6.40 -63.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240418258.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.114 kcal (2) G-P(sol) polarization free energy of solvation -70.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds