Wall clock time and date at job start Tue Mar 31 2020 10:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46850 * 2 1 4 4 C 1.53005 * 109.46918 * 119.99791 * 2 1 3 5 5 C 1.52993 * 109.47209 * 65.00484 * 4 2 1 6 6 N 1.46494 * 109.47138 * 180.02562 * 5 4 2 7 7 C 1.34891 * 125.90695 * 124.99829 * 6 5 4 8 8 C 1.36410 * 107.60576 * 180.02562 * 7 6 5 9 9 C 1.48506 * 126.21123 * 180.02562 * 8 7 6 10 10 C 1.39306 * 120.06530 * 359.71958 * 9 8 7 11 11 C 1.37955 * 119.93880 * 179.74134 * 10 9 8 12 12 C 1.38797 * 120.06160 * 0.51598 * 11 10 9 13 13 O 1.35915 * 119.93608 * 179.74013 * 12 11 10 14 14 C 1.42891 * 117.00234 * 0.02562 * 13 12 11 15 15 C 1.50706 * 109.47346 * 179.97438 * 14 13 12 16 16 H 1.08002 * 119.99455 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00396 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99731 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00128 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46975 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46870 * 120.00232 * 19 17 15 22 22 H 1.48501 * 109.47393 * 240.00017 * 19 17 15 23 23 C 1.38792 * 120.11881 * 359.76191 * 12 11 10 24 24 C 1.37949 * 120.06655 * 359.97438 * 23 12 11 25 25 C 1.40826 * 107.56765 * 0.26314 * 8 7 6 26 26 N 1.30681 * 108.10913 * 359.55367 * 25 8 7 27 27 H 1.09004 * 109.47068 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47893 * 300.00159 * 1 2 3 29 29 H 1.08999 * 109.47315 * 60.00371 * 1 2 3 30 30 H 1.08996 * 109.47376 * 239.99932 * 2 1 3 31 31 H 1.08999 * 109.47062 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.46859 * 299.99908 * 3 2 1 33 33 H 1.09005 * 109.47428 * 59.99764 * 3 2 1 34 34 H 1.09001 * 109.46708 * 304.99962 * 4 2 1 35 35 H 1.08998 * 109.46562 * 185.00639 * 4 2 1 36 36 H 1.08991 * 109.47601 * 59.99545 * 5 4 2 37 37 H 1.09009 * 109.46997 * 299.99444 * 5 4 2 38 38 H 1.07997 * 126.19095 * 359.97438 * 7 6 5 39 39 H 1.08004 * 120.02779 * 359.97438 * 10 9 8 40 40 H 1.07994 * 119.96914 * 180.23941 * 11 10 9 41 41 H 1.09004 * 109.47167 * 299.99681 * 14 13 12 42 42 H 1.09002 * 109.47567 * 59.99904 * 14 13 12 43 43 H 0.97006 * 119.99742 * 179.97438 * 18 17 15 44 44 H 1.08005 * 119.96523 * 179.97438 * 23 12 11 45 45 H 1.08004 * 120.03117 * 180.02562 * 24 23 12 46 46 H 1.08001 * 125.94546 * 179.70422 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6353 -2.1954 1.1881 6 7 2.1230 -2.8858 2.3845 7 6 1.3719 -3.6023 3.2459 8 6 2.2007 -4.0774 4.2196 9 6 1.8029 -4.9187 5.3769 10 6 0.4705 -5.2888 5.5453 11 6 0.1046 -6.0748 6.6184 12 6 1.0608 -6.4879 7.5357 13 8 0.6967 -7.2579 8.5948 14 6 -0.6857 -7.6039 8.7005 15 6 -0.8985 -8.4541 9.9265 16 1 -0.0615 -8.7054 10.5612 17 6 -2.1614 -8.9111 10.2379 18 7 -3.1804 -8.6054 9.4648 19 14 -2.4249 -9.9655 11.7571 20 1 -1.1280 -10.1649 12.4523 21 1 -3.3772 -9.2861 12.6721 22 1 -2.9793 -11.2832 11.3551 23 6 2.3881 -6.1159 7.3734 24 6 2.7605 -5.3345 6.2993 25 6 3.5012 -3.6207 3.9309 26 7 3.4495 -2.9156 2.8319 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3635 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 3.1299 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6765 1.9564 0.8900 34 1 1.6053 -0.2616 2.1370 35 1 3.1262 -0.6442 1.2952 36 1 2.0699 -2.6549 0.3004 37 1 0.5489 -2.2724 1.1422 38 1 0.3070 -3.7687 3.1775 39 1 -0.2748 -4.9637 4.8344 40 1 -0.9276 -6.3652 6.7473 41 1 -1.2826 -6.6953 8.7800 42 1 -0.9895 -8.1618 7.8148 43 1 -4.0690 -8.9272 9.6837 44 1 3.1301 -6.4384 8.0889 45 1 3.7935 -5.0457 6.1734 46 1 4.3876 -3.8206 4.5148 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240420181.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:11 Heat of formation + Delta-G solvation = 35.407040 kcal Electronic energy + Delta-G solvation = -24194.005524 eV Core-core repulsion = 20663.651309 eV Total energy + Delta-G solvation = -3530.354215 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.26943 -39.20178 -37.47453 -36.61172 -33.43658 -32.91071 -31.30579 -30.50363 -29.58162 -28.02675 -27.65053 -26.83649 -24.30817 -23.50437 -22.39340 -21.67063 -20.53183 -20.27336 -19.85446 -17.72607 -16.93859 -16.45320 -15.91126 -15.52767 -15.11092 -15.01396 -14.70457 -14.55677 -14.39324 -14.08949 -13.94763 -13.67642 -13.24353 -13.17342 -12.79346 -12.72427 -12.52967 -12.42737 -12.10389 -11.94764 -11.73729 -11.62407 -11.31812 -11.19765 -11.06804 -11.05964 -10.94516 -10.56463 -10.46916 -10.28553 -10.12142 -9.50633 -9.24810 -8.88909 -8.58968 -8.48016 -7.02245 -6.24893 -4.28187 1.46815 1.82578 2.01922 2.35201 3.06825 3.23098 3.29767 3.35938 4.09582 4.17922 4.31392 4.39834 4.41652 4.55010 4.56925 4.73297 4.76439 4.90147 4.95454 5.12556 5.16088 5.17762 5.24036 5.31514 5.35876 5.37651 5.40297 5.48826 5.53577 5.60987 5.68211 5.74082 5.81059 5.86292 5.89235 6.08489 6.22356 6.46908 6.48572 6.77365 6.79814 6.93978 7.01147 7.04350 7.15973 7.32271 7.63293 7.69148 7.96532 8.50019 8.85697 9.37162 10.86459 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.026076 B = 0.001952 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.528270 B =14342.908380 C =15208.432678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.095 4.095 3 C -0.147 4.147 4 C -0.126 4.126 5 C 0.134 3.866 6 N -0.373 5.373 7 C 0.053 3.947 8 C -0.173 4.173 9 C -0.064 4.064 10 C -0.077 4.077 11 C -0.207 4.207 12 C 0.149 3.851 13 O -0.317 6.317 14 C 0.192 3.808 15 C -0.523 4.523 16 H 0.071 0.929 17 C 0.059 3.941 18 N -0.895 5.895 19 Si 0.913 3.087 20 H -0.269 1.269 21 H -0.281 1.281 22 H -0.281 1.281 23 C -0.164 4.164 24 C -0.078 4.078 25 C 0.056 3.944 26 N -0.297 5.297 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.073 0.927 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.082 0.918 37 H 0.096 0.904 38 H 0.173 0.827 39 H 0.114 0.886 40 H 0.133 0.867 41 H 0.021 0.979 42 H 0.021 0.979 43 H 0.266 0.734 44 H 0.126 0.874 45 H 0.121 0.879 46 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.650 16.453 -19.509 26.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.114 4.114 3 C -0.204 4.204 4 C -0.165 4.165 5 C 0.013 3.987 6 N -0.155 5.155 7 C -0.092 4.092 8 C -0.184 4.184 9 C -0.066 4.066 10 C -0.096 4.096 11 C -0.225 4.225 12 C 0.101 3.899 13 O -0.230 6.230 14 C 0.119 3.881 15 C -0.561 4.561 16 H 0.089 0.911 17 C -0.143 4.143 18 N -0.533 5.533 19 Si 0.740 3.260 20 H -0.193 1.193 21 H -0.207 1.207 22 H -0.207 1.207 23 C -0.183 4.183 24 C -0.096 4.096 25 C -0.131 4.131 26 N -0.118 5.118 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.114 0.886 38 H 0.190 0.810 39 H 0.132 0.868 40 H 0.151 0.849 41 H 0.039 0.961 42 H 0.039 0.961 43 H 0.076 0.924 44 H 0.144 0.856 45 H 0.139 0.861 46 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 9.163 17.098 -20.349 28.113 hybrid contribution -1.140 -1.024 1.190 1.941 sum 8.023 16.074 -19.158 26.263 Atomic orbital electron populations 1.21951 0.95031 1.01902 1.02199 1.21079 0.95984 0.96592 0.97723 1.21820 1.01150 0.95538 1.01928 1.21939 1.02737 0.93113 0.98670 1.21806 0.99599 0.92676 0.84626 1.48468 1.05459 1.40357 1.21173 1.22504 0.98158 0.96794 0.91785 1.18889 0.92844 1.07701 0.99011 1.17770 0.93254 1.00847 0.94700 1.20780 0.94714 0.97098 0.96986 1.21366 1.00473 1.03667 0.97041 1.19324 0.93203 0.89954 0.87433 1.86118 1.32717 1.63010 1.41169 1.20645 0.73586 0.95648 0.98182 1.21030 0.94514 1.31755 1.08778 0.91081 1.24938 0.95265 0.96399 0.97661 1.69962 1.00024 1.45327 1.38021 0.86197 0.78459 0.79609 0.81771 1.19331 1.20686 1.20679 1.20334 0.94067 1.03397 1.00456 1.20718 0.98452 0.97061 0.93364 1.23926 0.98016 0.96552 0.94570 1.77151 0.96844 1.23361 1.14439 0.92510 0.92403 0.92429 0.90873 0.92524 0.92504 0.92563 0.91251 0.90321 0.89970 0.88601 0.80967 0.86770 0.84902 0.96076 0.96076 0.92417 0.85611 0.86141 0.80010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.73 8.95 37.16 0.33 -0.40 16 2 C -0.09 -0.49 2.92 -90.62 -0.26 -0.76 16 3 C -0.15 -0.77 9.19 37.16 0.34 -0.42 16 4 C -0.13 -0.87 4.86 -26.73 -0.13 -1.00 16 5 C 0.13 0.98 6.26 -4.05 -0.03 0.95 16 6 N -0.37 -4.05 3.67 -61.10 -0.22 -4.28 16 7 C 0.05 0.60 10.83 -16.87 -0.18 0.42 16 8 C -0.17 -2.28 6.04 -105.34 -0.64 -2.91 16 9 C -0.06 -0.96 5.88 -104.87 -0.62 -1.57 16 10 C -0.08 -1.22 9.56 -39.29 -0.38 -1.59 16 11 C -0.21 -3.92 9.02 -39.48 -0.36 -4.28 16 12 C 0.15 3.07 6.69 -39.17 -0.26 2.81 16 13 O -0.32 -7.76 10.12 -19.47 -0.20 -7.95 16 14 C 0.19 5.12 4.49 36.01 0.16 5.28 16 15 C -0.52 -14.97 9.43 -34.44 -0.32 -15.30 16 16 H 0.07 2.02 7.81 -52.49 -0.41 1.61 16 17 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 18 N -0.89 -25.89 13.29 55.43 0.74 -25.15 16 19 Si 0.91 21.27 29.54 -169.99 -5.02 16.25 16 20 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 23 C -0.16 -2.84 9.97 -39.48 -0.39 -3.23 16 24 C -0.08 -1.15 9.57 -39.29 -0.38 -1.52 16 25 C 0.06 0.69 11.42 -17.06 -0.19 0.49 16 26 N -0.30 -3.78 12.38 30.80 0.38 -3.40 16 27 H 0.06 0.24 6.56 -51.93 -0.34 -0.10 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.10 0.51 6.49 -51.92 -0.34 0.17 16 38 H 0.17 1.50 7.28 -52.49 -0.38 1.12 16 39 H 0.11 1.48 7.01 -52.48 -0.37 1.11 16 40 H 0.13 2.65 6.28 -52.49 -0.33 2.32 16 41 H 0.02 0.58 7.65 -51.93 -0.40 0.19 16 42 H 0.02 0.58 7.66 -51.93 -0.40 0.19 16 43 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 44 H 0.13 2.00 8.06 -52.48 -0.42 1.58 16 45 H 0.12 1.40 7.04 -52.48 -0.37 1.03 16 46 H 0.18 1.77 7.34 -52.49 -0.39 1.39 16 LS Contribution 381.63 15.07 5.75 5.75 Total: -1.00 -31.86 381.63 -9.05 -40.91 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -7.08 Total: -0.66 kcal Atomic # 6 Polarization: -18.08 SS G_CDS: -3.40 Total: -21.47 kcal Atomic # 7 Polarization: -33.72 SS G_CDS: 0.89 Total: -32.82 kcal Atomic # 8 Polarization: -7.76 SS G_CDS: -0.20 Total: -7.95 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.86 -9.05 -40.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240420181.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.318 kcal (2) G-P(sol) polarization free energy of solvation -31.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds