Wall clock time and date at job start Tue Mar 31 2020 10:59:11
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.52998 * 109.46850 * 2 1
4 4 C 1.53005 * 109.46918 * 119.99791 * 2 1 3
5 5 C 1.52993 * 109.47209 * 65.00484 * 4 2 1
6 6 N 1.46494 * 109.47138 * 180.02562 * 5 4 2
7 7 C 1.34891 * 125.90695 * 124.99829 * 6 5 4
8 8 C 1.36410 * 107.60576 * 180.02562 * 7 6 5
9 9 C 1.48506 * 126.21123 * 180.02562 * 8 7 6
10 10 C 1.39306 * 120.06530 * 359.71958 * 9 8 7
11 11 C 1.37955 * 119.93880 * 179.74134 * 10 9 8
12 12 C 1.38797 * 120.06160 * 0.51598 * 11 10 9
13 13 O 1.35915 * 119.93608 * 179.74013 * 12 11 10
14 14 C 1.42891 * 117.00234 * 0.02562 * 13 12 11
15 15 C 1.50706 * 109.47346 * 179.97438 * 14 13 12
16 16 H 1.08002 * 119.99455 * 359.97438 * 15 14 13
17 17 C 1.37871 * 120.00396 * 179.97438 * 15 14 13
18 18 N 1.31516 * 119.99731 * 0.02562 * 17 15 14
19 19 Si 1.86797 * 120.00128 * 179.97438 * 17 15 14
20 20 H 1.48500 * 109.46975 * 0.02562 * 19 17 15
21 21 H 1.48508 * 109.46870 * 120.00232 * 19 17 15
22 22 H 1.48501 * 109.47393 * 240.00017 * 19 17 15
23 23 C 1.38792 * 120.11881 * 359.76191 * 12 11 10
24 24 C 1.37949 * 120.06655 * 359.97438 * 23 12 11
25 25 C 1.40826 * 107.56765 * 0.26314 * 8 7 6
26 26 N 1.30681 * 108.10913 * 359.55367 * 25 8 7
27 27 H 1.09004 * 109.47068 * 180.02562 * 1 2 3
28 28 H 1.08997 * 109.47893 * 300.00159 * 1 2 3
29 29 H 1.08999 * 109.47315 * 60.00371 * 1 2 3
30 30 H 1.08996 * 109.47376 * 239.99932 * 2 1 3
31 31 H 1.08999 * 109.47062 * 180.02562 * 3 2 1
32 32 H 1.08999 * 109.46859 * 299.99908 * 3 2 1
33 33 H 1.09005 * 109.47428 * 59.99764 * 3 2 1
34 34 H 1.09001 * 109.46708 * 304.99962 * 4 2 1
35 35 H 1.08998 * 109.46562 * 185.00639 * 4 2 1
36 36 H 1.08991 * 109.47601 * 59.99545 * 5 4 2
37 37 H 1.09009 * 109.46997 * 299.99444 * 5 4 2
38 38 H 1.07997 * 126.19095 * 359.97438 * 7 6 5
39 39 H 1.08004 * 120.02779 * 359.97438 * 10 9 8
40 40 H 1.07994 * 119.96914 * 180.23941 * 11 10 9
41 41 H 1.09004 * 109.47167 * 299.99681 * 14 13 12
42 42 H 1.09002 * 109.47567 * 59.99904 * 14 13 12
43 43 H 0.97006 * 119.99742 * 179.97438 * 18 17 15
44 44 H 1.08005 * 119.96523 * 179.97438 * 23 12 11
45 45 H 1.08004 * 120.03117 * 180.02562 * 24 23 12
46 46 H 1.08001 * 125.94546 * 179.70422 * 25 8 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 6 2.0400 -0.7212 1.2493
5 6 1.6353 -2.1954 1.1881
6 7 2.1230 -2.8858 2.3845
7 6 1.3719 -3.6023 3.2459
8 6 2.2007 -4.0774 4.2196
9 6 1.8029 -4.9187 5.3769
10 6 0.4705 -5.2888 5.5453
11 6 0.1046 -6.0748 6.6184
12 6 1.0608 -6.4879 7.5357
13 8 0.6967 -7.2579 8.5948
14 6 -0.6857 -7.6039 8.7005
15 6 -0.8985 -8.4541 9.9265
16 1 -0.0615 -8.7054 10.5612
17 6 -2.1614 -8.9111 10.2379
18 7 -3.1804 -8.6054 9.4648
19 14 -2.4249 -9.9655 11.7571
20 1 -1.1280 -10.1649 12.4523
21 1 -3.3772 -9.2861 12.6721
22 1 -2.9793 -11.2832 11.3551
23 6 2.3881 -6.1159 7.3734
24 6 2.7605 -5.3345 6.2993
25 6 3.5012 -3.6207 3.9309
26 7 3.4495 -2.9156 2.8319
27 1 -0.3633 -1.0277 0.0005
28 1 -0.3635 0.5138 0.8899
29 1 -0.3634 0.5138 -0.8900
30 1 1.8934 -0.5138 -0.8899
31 1 3.1299 1.4425 -0.0005
32 1 1.6766 1.9563 -0.8900
33 1 1.6765 1.9564 0.8900
34 1 1.6053 -0.2616 2.1370
35 1 3.1262 -0.6442 1.2952
36 1 2.0699 -2.6549 0.3004
37 1 0.5489 -2.2724 1.1422
38 1 0.3070 -3.7687 3.1775
39 1 -0.2748 -4.9637 4.8344
40 1 -0.9276 -6.3652 6.7473
41 1 -1.2826 -6.6953 8.7800
42 1 -0.9895 -8.1618 7.8148
43 1 -4.0690 -8.9272 9.6837
44 1 3.1301 -6.4384 8.0889
45 1 3.7935 -5.0457 6.1734
46 1 4.3876 -3.8206 4.5148
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001240420181.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:59:11
Heat of formation + Delta-G solvation = 35.407040 kcal
Electronic energy + Delta-G solvation = -24194.005524 eV
Core-core repulsion = 20663.651309 eV
Total energy + Delta-G solvation = -3530.354215 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 314.174 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-41.26943 -39.20178 -37.47453 -36.61172 -33.43658 -32.91071 -31.30579 -30.50363
-29.58162 -28.02675 -27.65053 -26.83649 -24.30817 -23.50437 -22.39340 -21.67063
-20.53183 -20.27336 -19.85446 -17.72607 -16.93859 -16.45320 -15.91126 -15.52767
-15.11092 -15.01396 -14.70457 -14.55677 -14.39324 -14.08949 -13.94763 -13.67642
-13.24353 -13.17342 -12.79346 -12.72427 -12.52967 -12.42737 -12.10389 -11.94764
-11.73729 -11.62407 -11.31812 -11.19765 -11.06804 -11.05964 -10.94516 -10.56463
-10.46916 -10.28553 -10.12142 -9.50633 -9.24810 -8.88909 -8.58968 -8.48016
-7.02245 -6.24893 -4.28187 1.46815 1.82578 2.01922 2.35201 3.06825
3.23098 3.29767 3.35938 4.09582 4.17922 4.31392 4.39834 4.41652
4.55010 4.56925 4.73297 4.76439 4.90147 4.95454 5.12556 5.16088
5.17762 5.24036 5.31514 5.35876 5.37651 5.40297 5.48826 5.53577
5.60987 5.68211 5.74082 5.81059 5.86292 5.89235 6.08489 6.22356
6.46908 6.48572 6.77365 6.79814 6.93978 7.01147 7.04350 7.15973
7.32271 7.63293 7.69148 7.96532 8.50019 8.85697 9.37162 10.86459
Molecular weight = 314.17amu
Principal moments of inertia in cm(-1)
A = 0.026076 B = 0.001952 C = 0.001841
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1073.528270 B =14342.908380 C =15208.432678
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.154 4.154
2 C -0.095 4.095
3 C -0.147 4.147
4 C -0.126 4.126
5 C 0.134 3.866
6 N -0.373 5.373
7 C 0.053 3.947
8 C -0.173 4.173
9 C -0.064 4.064
10 C -0.077 4.077
11 C -0.207 4.207
12 C 0.149 3.851
13 O -0.317 6.317
14 C 0.192 3.808
15 C -0.523 4.523
16 H 0.071 0.929
17 C 0.059 3.941
18 N -0.895 5.895
19 Si 0.913 3.087
20 H -0.269 1.269
21 H -0.281 1.281
22 H -0.281 1.281
23 C -0.164 4.164
24 C -0.078 4.078
25 C 0.056 3.944
26 N -0.297 5.297
27 H 0.056 0.944
28 H 0.057 0.943
29 H 0.057 0.943
30 H 0.073 0.927
31 H 0.056 0.944
32 H 0.056 0.944
33 H 0.055 0.945
34 H 0.069 0.931
35 H 0.078 0.922
36 H 0.082 0.918
37 H 0.096 0.904
38 H 0.173 0.827
39 H 0.114 0.886
40 H 0.133 0.867
41 H 0.021 0.979
42 H 0.021 0.979
43 H 0.266 0.734
44 H 0.126 0.874
45 H 0.121 0.879
46 H 0.183 0.817
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.650 16.453 -19.509 26.946
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.211 4.211
2 C -0.114 4.114
3 C -0.204 4.204
4 C -0.165 4.165
5 C 0.013 3.987
6 N -0.155 5.155
7 C -0.092 4.092
8 C -0.184 4.184
9 C -0.066 4.066
10 C -0.096 4.096
11 C -0.225 4.225
12 C 0.101 3.899
13 O -0.230 6.230
14 C 0.119 3.881
15 C -0.561 4.561
16 H 0.089 0.911
17 C -0.143 4.143
18 N -0.533 5.533
19 Si 0.740 3.260
20 H -0.193 1.193
21 H -0.207 1.207
22 H -0.207 1.207
23 C -0.183 4.183
24 C -0.096 4.096
25 C -0.131 4.131
26 N -0.118 5.118
27 H 0.075 0.925
28 H 0.076 0.924
29 H 0.076 0.924
30 H 0.091 0.909
31 H 0.075 0.925
32 H 0.075 0.925
33 H 0.074 0.926
34 H 0.087 0.913
35 H 0.097 0.903
36 H 0.100 0.900
37 H 0.114 0.886
38 H 0.190 0.810
39 H 0.132 0.868
40 H 0.151 0.849
41 H 0.039 0.961
42 H 0.039 0.961
43 H 0.076 0.924
44 H 0.144 0.856
45 H 0.139 0.861
46 H 0.200 0.800
Dipole moment (debyes) X Y Z Total
from point charges 9.163 17.098 -20.349 28.113
hybrid contribution -1.140 -1.024 1.190 1.941
sum 8.023 16.074 -19.158 26.263
Atomic orbital electron populations
1.21951 0.95031 1.01902 1.02199 1.21079 0.95984 0.96592 0.97723
1.21820 1.01150 0.95538 1.01928 1.21939 1.02737 0.93113 0.98670
1.21806 0.99599 0.92676 0.84626 1.48468 1.05459 1.40357 1.21173
1.22504 0.98158 0.96794 0.91785 1.18889 0.92844 1.07701 0.99011
1.17770 0.93254 1.00847 0.94700 1.20780 0.94714 0.97098 0.96986
1.21366 1.00473 1.03667 0.97041 1.19324 0.93203 0.89954 0.87433
1.86118 1.32717 1.63010 1.41169 1.20645 0.73586 0.95648 0.98182
1.21030 0.94514 1.31755 1.08778 0.91081 1.24938 0.95265 0.96399
0.97661 1.69962 1.00024 1.45327 1.38021 0.86197 0.78459 0.79609
0.81771 1.19331 1.20686 1.20679 1.20334 0.94067 1.03397 1.00456
1.20718 0.98452 0.97061 0.93364 1.23926 0.98016 0.96552 0.94570
1.77151 0.96844 1.23361 1.14439 0.92510 0.92403 0.92429 0.90873
0.92524 0.92504 0.92563 0.91251 0.90321 0.89970 0.88601 0.80967
0.86770 0.84902 0.96076 0.96076 0.92417 0.85611 0.86141 0.80010
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.73 8.95 37.16 0.33 -0.40 16
2 C -0.09 -0.49 2.92 -90.62 -0.26 -0.76 16
3 C -0.15 -0.77 9.19 37.16 0.34 -0.42 16
4 C -0.13 -0.87 4.86 -26.73 -0.13 -1.00 16
5 C 0.13 0.98 6.26 -4.05 -0.03 0.95 16
6 N -0.37 -4.05 3.67 -61.10 -0.22 -4.28 16
7 C 0.05 0.60 10.83 -16.87 -0.18 0.42 16
8 C -0.17 -2.28 6.04 -105.34 -0.64 -2.91 16
9 C -0.06 -0.96 5.88 -104.87 -0.62 -1.57 16
10 C -0.08 -1.22 9.56 -39.29 -0.38 -1.59 16
11 C -0.21 -3.92 9.02 -39.48 -0.36 -4.28 16
12 C 0.15 3.07 6.69 -39.17 -0.26 2.81 16
13 O -0.32 -7.76 10.12 -19.47 -0.20 -7.95 16
14 C 0.19 5.12 4.49 36.01 0.16 5.28 16
15 C -0.52 -14.97 9.43 -34.44 -0.32 -15.30 16
16 H 0.07 2.02 7.81 -52.49 -0.41 1.61 16
17 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16
18 N -0.89 -25.89 13.29 55.43 0.74 -25.15 16
19 Si 0.91 21.27 29.54 -169.99 -5.02 16.25 16
20 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16
21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16
22 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16
23 C -0.16 -2.84 9.97 -39.48 -0.39 -3.23 16
24 C -0.08 -1.15 9.57 -39.29 -0.38 -1.52 16
25 C 0.06 0.69 11.42 -17.06 -0.19 0.49 16
26 N -0.30 -3.78 12.38 30.80 0.38 -3.40 16
27 H 0.06 0.24 6.56 -51.93 -0.34 -0.10 16
28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16
29 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16
30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16
31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16
32 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16
33 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16
34 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16
35 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16
36 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16
37 H 0.10 0.51 6.49 -51.92 -0.34 0.17 16
38 H 0.17 1.50 7.28 -52.49 -0.38 1.12 16
39 H 0.11 1.48 7.01 -52.48 -0.37 1.11 16
40 H 0.13 2.65 6.28 -52.49 -0.33 2.32 16
41 H 0.02 0.58 7.65 -51.93 -0.40 0.19 16
42 H 0.02 0.58 7.66 -51.93 -0.40 0.19 16
43 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16
44 H 0.13 2.00 8.06 -52.48 -0.42 1.58 16
45 H 0.12 1.40 7.04 -52.48 -0.37 1.03 16
46 H 0.18 1.77 7.34 -52.49 -0.39 1.39 16
LS Contribution 381.63 15.07 5.75 5.75
Total: -1.00 -31.86 381.63 -9.05 -40.91
By element:
Atomic # 1 Polarization: 6.42 SS G_CDS: -7.08 Total: -0.66 kcal
Atomic # 6 Polarization: -18.08 SS G_CDS: -3.40 Total: -21.47 kcal
Atomic # 7 Polarization: -33.72 SS G_CDS: 0.89 Total: -32.82 kcal
Atomic # 8 Polarization: -7.76 SS G_CDS: -0.20 Total: -7.95 kcal
Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal
Total LS contribution 5.75 Total: 5.75 kcal
Total: -31.86 -9.05 -40.91 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001240420181.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 76.318 kcal
(2) G-P(sol) polarization free energy of solvation -31.857 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.460 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.053 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.911 kcal
(6) G-S(sol) free energy of system = (1) + (5) 35.407 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds