Wall clock time and date at job start Tue Mar 31 2020 10:59:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46850 * 2 1 4 4 C 1.53005 * 109.46918 * 119.99791 * 2 1 3 5 5 C 1.52993 * 109.47209 * 65.00484 * 4 2 1 6 6 N 1.46494 * 109.47138 * 180.02562 * 5 4 2 7 7 C 1.34891 * 125.90695 * 124.99829 * 6 5 4 8 8 C 1.36410 * 107.60576 * 180.02562 * 7 6 5 9 9 C 1.48506 * 126.21123 * 180.02562 * 8 7 6 10 10 C 1.39306 * 120.06530 * 359.71958 * 9 8 7 11 11 C 1.37955 * 119.93880 * 179.74134 * 10 9 8 12 12 C 1.38797 * 120.06160 * 0.51598 * 11 10 9 13 13 O 1.35915 * 119.93608 * 179.74013 * 12 11 10 14 14 C 1.42891 * 117.00234 * 0.02562 * 13 12 11 15 15 C 1.50706 * 109.47346 * 179.97438 * 14 13 12 16 16 H 1.08002 * 119.99455 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00396 * 179.97438 * 15 14 13 18 18 N 1.31516 * 119.99731 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00128 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46975 * 0.02562 * 19 17 15 21 21 H 1.48508 * 109.46870 * 120.00232 * 19 17 15 22 22 H 1.48501 * 109.47393 * 240.00017 * 19 17 15 23 23 C 1.38792 * 120.11881 * 359.76191 * 12 11 10 24 24 C 1.37949 * 120.06655 * 359.97438 * 23 12 11 25 25 C 1.40826 * 107.56765 * 0.26314 * 8 7 6 26 26 N 1.30681 * 108.10913 * 359.55367 * 25 8 7 27 27 H 1.09004 * 109.47068 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47893 * 300.00159 * 1 2 3 29 29 H 1.08999 * 109.47315 * 60.00371 * 1 2 3 30 30 H 1.08996 * 109.47376 * 239.99932 * 2 1 3 31 31 H 1.08999 * 109.47062 * 180.02562 * 3 2 1 32 32 H 1.08999 * 109.46859 * 299.99908 * 3 2 1 33 33 H 1.09005 * 109.47428 * 59.99764 * 3 2 1 34 34 H 1.09001 * 109.46708 * 304.99962 * 4 2 1 35 35 H 1.08998 * 109.46562 * 185.00639 * 4 2 1 36 36 H 1.08991 * 109.47601 * 59.99545 * 5 4 2 37 37 H 1.09009 * 109.46997 * 299.99444 * 5 4 2 38 38 H 1.07997 * 126.19095 * 359.97438 * 7 6 5 39 39 H 1.08004 * 120.02779 * 359.97438 * 10 9 8 40 40 H 1.07994 * 119.96914 * 180.23941 * 11 10 9 41 41 H 1.09004 * 109.47167 * 299.99681 * 14 13 12 42 42 H 1.09002 * 109.47567 * 59.99904 * 14 13 12 43 43 H 0.97006 * 119.99742 * 179.97438 * 18 17 15 44 44 H 1.08005 * 119.96523 * 179.97438 * 23 12 11 45 45 H 1.08004 * 120.03117 * 180.02562 * 24 23 12 46 46 H 1.08001 * 125.94546 * 179.70422 * 25 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6353 -2.1954 1.1881 6 7 2.1230 -2.8858 2.3845 7 6 1.3719 -3.6023 3.2459 8 6 2.2007 -4.0774 4.2196 9 6 1.8029 -4.9187 5.3769 10 6 0.4705 -5.2888 5.5453 11 6 0.1046 -6.0748 6.6184 12 6 1.0608 -6.4879 7.5357 13 8 0.6967 -7.2579 8.5948 14 6 -0.6857 -7.6039 8.7005 15 6 -0.8985 -8.4541 9.9265 16 1 -0.0615 -8.7054 10.5612 17 6 -2.1614 -8.9111 10.2379 18 7 -3.1804 -8.6054 9.4648 19 14 -2.4249 -9.9655 11.7571 20 1 -1.1280 -10.1649 12.4523 21 1 -3.3772 -9.2861 12.6721 22 1 -2.9793 -11.2832 11.3551 23 6 2.3881 -6.1159 7.3734 24 6 2.7605 -5.3345 6.2993 25 6 3.5012 -3.6207 3.9309 26 7 3.4495 -2.9156 2.8319 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3635 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 3.1299 1.4425 -0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6765 1.9564 0.8900 34 1 1.6053 -0.2616 2.1370 35 1 3.1262 -0.6442 1.2952 36 1 2.0699 -2.6549 0.3004 37 1 0.5489 -2.2724 1.1422 38 1 0.3070 -3.7687 3.1775 39 1 -0.2748 -4.9637 4.8344 40 1 -0.9276 -6.3652 6.7473 41 1 -1.2826 -6.6953 8.7800 42 1 -0.9895 -8.1618 7.8148 43 1 -4.0690 -8.9272 9.6837 44 1 3.1301 -6.4384 8.0889 45 1 3.7935 -5.0457 6.1734 46 1 4.3876 -3.8206 4.5148 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240420181.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:59:10 Heat of formation + Delta-G solvation = 19.009944 kcal Electronic energy + Delta-G solvation = -24194.716555 eV Core-core repulsion = 20663.651309 eV Total energy + Delta-G solvation = -3531.065246 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.18104 -40.70640 -38.33467 -37.80800 -35.07726 -34.15214 -32.51337 -31.80188 -30.51930 -29.71240 -28.19659 -27.98144 -25.39822 -25.02173 -23.55665 -23.06943 -21.26029 -21.16193 -20.77749 -19.22010 -18.46361 -18.07001 -16.82829 -16.60463 -16.43088 -16.26779 -16.13406 -15.91355 -15.55056 -14.91809 -14.68212 -14.63649 -14.55014 -14.18196 -13.90521 -13.73663 -13.66501 -13.33646 -13.16352 -13.09355 -12.90718 -12.81890 -12.76279 -12.39253 -12.25843 -12.03004 -11.79769 -11.75408 -11.71524 -11.55855 -11.39725 -11.26931 -10.73950 -10.38367 -10.01925 -9.86661 -8.39097 -8.33115 -6.53075 0.27820 0.49476 1.04445 1.39765 1.41143 1.55956 1.59257 1.96979 2.28825 2.80972 2.95413 3.09207 3.44549 3.79600 3.85282 3.89949 3.99101 4.07165 4.11582 4.16159 4.30757 4.36761 4.41440 4.45770 4.49673 4.63864 4.70473 4.74579 4.80901 4.86572 4.90010 4.97720 4.99040 5.00756 5.05237 5.10699 5.19000 5.28647 5.37584 5.42193 5.46688 5.47317 5.59930 5.68736 5.75432 5.86110 5.99242 6.10042 6.52767 6.73101 6.84838 7.19385 8.73454 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.026076 B = 0.001952 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.528270 B =14342.908380 C =15208.432678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.089 4.089 3 C -0.148 4.148 4 C -0.118 4.118 5 C 0.126 3.874 6 N -0.370 5.370 7 C 0.067 3.933 8 C -0.205 4.205 9 C -0.043 4.043 10 C -0.079 4.079 11 C -0.219 4.219 12 C 0.097 3.903 13 O -0.340 6.340 14 C 0.212 3.788 15 C -0.557 4.557 16 H 0.066 0.934 17 C 0.011 3.989 18 N -0.926 5.926 19 Si 0.988 3.012 20 H -0.264 1.264 21 H -0.270 1.270 22 H -0.270 1.270 23 C -0.162 4.162 24 C -0.073 4.073 25 C 0.055 3.945 26 N -0.321 5.321 27 H 0.065 0.935 28 H 0.051 0.949 29 H 0.062 0.938 30 H 0.081 0.919 31 H 0.052 0.948 32 H 0.064 0.936 33 H 0.050 0.950 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.092 0.908 37 H 0.121 0.879 38 H 0.200 0.800 39 H 0.144 0.856 40 H 0.110 0.890 41 H 0.001 0.999 42 H 0.001 0.999 43 H 0.274 0.726 44 H 0.136 0.864 45 H 0.159 0.841 46 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.117 17.219 -20.883 28.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.109 4.109 3 C -0.206 4.206 4 C -0.156 4.156 5 C 0.006 3.994 6 N -0.150 5.150 7 C -0.081 4.081 8 C -0.216 4.216 9 C -0.045 4.045 10 C -0.098 4.098 11 C -0.238 4.238 12 C 0.051 3.949 13 O -0.254 6.254 14 C 0.139 3.861 15 C -0.594 4.594 16 H 0.084 0.916 17 C -0.189 4.189 18 N -0.564 5.564 19 Si 0.811 3.189 20 H -0.188 1.188 21 H -0.195 1.195 22 H -0.195 1.195 23 C -0.180 4.180 24 C -0.091 4.091 25 C -0.131 4.131 26 N -0.141 5.141 27 H 0.083 0.917 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.099 0.901 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.080 0.920 36 H 0.110 0.890 37 H 0.139 0.861 38 H 0.217 0.783 39 H 0.162 0.838 40 H 0.128 0.872 41 H 0.018 0.982 42 H 0.018 0.982 43 H 0.083 0.917 44 H 0.154 0.846 45 H 0.176 0.824 46 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 9.655 17.900 -21.767 29.790 hybrid contribution -1.205 -1.068 1.362 2.109 sum 8.450 16.831 -20.405 27.768 Atomic orbital electron populations 1.21954 0.94415 1.02475 1.02217 1.21047 0.96405 0.96320 0.97077 1.21833 1.00951 0.95696 1.02088 1.21833 1.01562 0.93129 0.99067 1.22154 1.01139 0.92424 0.83676 1.48798 1.04922 1.39722 1.21598 1.22965 0.99255 0.95067 0.90780 1.18838 0.93882 1.09407 0.99455 1.18018 0.92670 0.99125 0.94669 1.21032 0.96144 0.96233 0.96341 1.21307 0.99223 1.04983 0.98318 1.19752 0.95112 0.92163 0.87850 1.86028 1.30830 1.64999 1.43565 1.20152 0.75016 0.94140 0.96820 1.21368 0.95138 1.33166 1.09767 0.91602 1.25966 0.94547 0.97318 1.01023 1.70064 1.00653 1.45961 1.39729 0.85058 0.78647 0.77831 0.77404 1.18759 1.19481 1.19465 1.20567 0.92742 1.03294 1.01445 1.21118 1.00370 0.95639 0.91987 1.24289 0.98475 0.95810 0.94480 1.77144 0.98065 1.24025 1.14908 0.91651 0.92970 0.91886 0.90074 0.92892 0.91691 0.93079 0.92370 0.91994 0.88959 0.86135 0.78317 0.83838 0.87163 0.98155 0.98150 0.91736 0.84597 0.82372 0.78022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 8.95 71.98 0.64 -0.45 16 2 C -0.09 -0.75 2.92 -10.79 -0.03 -0.79 16 3 C -0.15 -1.34 9.19 71.98 0.66 -0.68 16 4 C -0.12 -1.42 4.86 30.59 0.15 -1.27 16 5 C 0.13 1.47 6.26 86.38 0.54 2.01 16 6 N -0.37 -7.01 3.67 -347.22 -1.28 -8.29 16 7 C 0.07 1.30 10.83 83.80 0.91 2.21 16 8 C -0.20 -4.82 6.04 -20.33 -0.12 -4.94 16 9 C -0.04 -1.21 5.88 -20.02 -0.12 -1.32 16 10 C -0.08 -2.44 9.56 22.46 0.21 -2.22 16 11 C -0.22 -8.72 9.02 22.34 0.20 -8.52 16 12 C 0.10 4.20 6.69 22.54 0.15 4.35 16 13 O -0.34 -17.70 10.12 -92.59 -0.94 -18.64 16 14 C 0.21 12.10 4.49 71.24 0.32 12.42 16 15 C -0.56 -33.24 9.43 25.60 0.24 -33.00 16 16 H 0.07 3.88 7.81 -2.91 -0.02 3.86 16 17 C 0.01 0.62 5.46 84.65 0.46 1.08 16 18 N -0.93 -54.82 13.29 21.45 0.28 -54.53 16 19 Si 0.99 43.88 29.54 68.60 2.03 45.91 16 20 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 21 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 22 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 23 C -0.16 -5.61 9.97 22.33 0.22 -5.39 16 24 C -0.07 -2.03 9.57 22.46 0.22 -1.81 16 25 C 0.06 1.22 11.42 85.50 0.98 2.20 16 26 N -0.32 -7.42 12.38 -56.47 -0.70 -8.12 16 27 H 0.06 0.35 6.56 -2.39 -0.02 0.34 16 28 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 30 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.05 0.51 8.14 -2.38 -0.02 0.49 16 34 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 35 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.12 0.83 6.49 -2.38 -0.02 0.82 16 38 H 0.20 2.67 7.28 -2.91 -0.02 2.65 16 39 H 0.14 3.44 7.01 -2.91 -0.02 3.42 16 40 H 0.11 4.79 6.28 -2.91 -0.02 4.77 16 41 H 0.00 0.04 7.65 -2.38 -0.02 0.02 16 42 H 0.00 0.04 7.66 -2.39 -0.02 0.02 16 43 H 0.27 14.90 8.31 -92.70 -0.77 14.13 16 44 H 0.14 4.31 8.06 -2.91 -0.02 4.29 16 45 H 0.16 3.15 7.04 -2.91 -0.02 3.13 16 46 H 0.20 3.30 7.34 -2.91 -0.02 3.28 16 Total: -1.00 -71.68 381.63 6.00 -65.68 By element: Atomic # 1 Polarization: 13.15 SS G_CDS: 0.96 Total: 14.11 kcal Atomic # 6 Polarization: -41.76 SS G_CDS: 5.63 Total: -36.13 kcal Atomic # 7 Polarization: -69.25 SS G_CDS: -1.69 Total: -70.94 kcal Atomic # 8 Polarization: -17.70 SS G_CDS: -0.94 Total: -18.64 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -71.68 6.00 -65.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240420181.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.695 kcal (2) G-P(sol) polarization free energy of solvation -71.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds