Wall clock time and date at job start Tue Mar 31 2020 10:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.46998 * 2 1 4 4 C 1.52990 * 109.47223 * 180.02562 * 3 2 1 5 5 C 1.53001 * 109.47223 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.47431 * 179.97438 * 5 4 3 7 7 C 1.53001 * 109.47431 * 180.02562 * 6 5 4 8 8 C 1.50694 * 109.47037 * 180.02562 * 7 6 5 9 9 C 1.38318 * 119.88333 * 269.72769 * 8 7 6 10 10 C 1.38027 * 120.12270 * 179.72725 * 9 8 7 11 11 C 1.39310 * 119.87669 * 0.56362 * 10 9 8 12 12 C 1.48461 * 120.11912 * 179.72486 * 11 10 9 13 13 N 1.31256 * 126.20303 * 179.67161 * 12 11 10 14 14 O 1.21268 * 110.52759 * 179.84014 * 13 12 11 15 15 C 1.34739 * 109.75925 * 0.42969 * 14 13 12 16 16 C 1.40379 * 126.68162 * 179.70262 * 15 14 13 17 17 H 1.08001 * 119.99733 * 174.37424 * 16 15 14 18 18 C 1.40430 * 119.99968 * 354.36856 * 16 15 14 19 19 N 1.30520 * 120.00002 * 6.01236 * 18 16 15 20 20 Si 1.86801 * 119.99753 * 186.01146 * 18 16 15 21 21 H 1.48500 * 109.47112 * 94.98318 * 20 18 16 22 22 H 1.48496 * 109.47084 * 214.98276 * 20 18 16 23 23 H 1.48502 * 109.47160 * 334.97957 * 20 18 16 24 24 N 1.33184 * 106.63688 * 359.73223 * 15 14 13 25 25 C 1.39312 * 119.76747 * 359.71106 * 11 10 9 26 26 C 1.38028 * 119.87605 * 359.97438 * 25 11 10 27 27 H 1.09001 * 109.47354 * 59.99841 * 1 2 3 28 28 H 1.09002 * 109.46816 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47120 * 299.99662 * 1 2 3 30 30 H 1.09001 * 109.47120 * 240.00338 * 2 1 3 31 31 H 1.09001 * 109.47100 * 119.99671 * 2 1 3 32 32 H 1.09007 * 109.47262 * 59.99600 * 3 2 1 33 33 H 1.09001 * 109.47198 * 300.00254 * 3 2 1 34 34 H 1.09001 * 109.47091 * 60.00218 * 4 3 2 35 35 H 1.09001 * 109.47158 * 300.00177 * 4 3 2 36 36 H 1.08997 * 109.47164 * 59.99658 * 5 4 3 37 37 H 1.09001 * 109.47198 * 300.00153 * 5 4 3 38 38 H 1.09007 * 109.47306 * 59.99526 * 6 5 4 39 39 H 1.09001 * 109.47055 * 300.00241 * 6 5 4 40 40 H 1.09001 * 109.46926 * 299.99677 * 7 6 5 41 41 H 1.09001 * 109.46909 * 60.00108 * 7 6 5 42 42 H 1.08003 * 119.93715 * 359.97438 * 9 8 7 43 43 H 1.07994 * 120.06150 * 180.27248 * 10 9 8 44 44 H 0.96999 * 119.99518 * 179.97438 * 19 18 16 45 45 H 1.07998 * 120.06436 * 180.02562 * 25 11 10 46 46 H 1.08000 * 119.94208 * 180.02562 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 -0.0006 5 6 4.0799 2.8851 -0.0013 6 6 5.6099 2.8852 -0.0013 7 6 6.1199 4.3277 -0.0013 8 6 7.6268 4.3277 -0.0019 9 6 8.3165 4.3333 1.1970 10 6 9.6967 4.3276 1.2023 11 6 10.3952 4.3282 -0.0031 12 6 11.8798 4.3283 -0.0037 13 7 12.6546 4.3228 -1.0632 14 8 13.8223 4.3278 -0.7361 15 6 13.9189 4.3278 0.6078 16 6 15.1019 4.3269 1.3636 17 1 15.0559 4.4187 2.4387 18 6 16.3451 4.2065 0.7216 19 7 16.4098 4.2135 -0.5820 20 14 17.9061 4.0362 1.7335 21 1 18.2435 2.5980 1.8848 22 1 19.0205 4.7364 1.0458 23 1 17.6952 4.6390 3.0741 24 7 12.6735 4.3282 1.0796 25 6 9.6957 4.3284 -1.2079 26 6 8.3155 4.3275 -1.2015 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.6766 1.9564 0.8900 33 1 1.6767 1.9564 -0.8900 34 1 3.9329 0.9289 -0.8909 35 1 3.9337 0.9286 0.8891 36 1 3.7169 3.3992 0.8886 37 1 3.7162 3.3987 -0.8913 38 1 5.9733 2.3709 -0.8910 39 1 5.9732 2.3718 0.8889 40 1 5.7565 4.8415 -0.8913 41 1 5.7565 4.8415 0.8887 42 1 7.7739 4.3380 2.1309 43 1 10.2341 4.3275 2.1390 44 1 17.2686 4.1307 -1.0253 45 1 10.2324 4.3285 -2.1450 46 1 7.7721 4.3272 -2.1349 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001247384646.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:12 Heat of formation + Delta-G solvation = 6.700391 kcal Electronic energy + Delta-G solvation = -23850.562170 eV Core-core repulsion = 20318.963141 eV Total energy + Delta-G solvation = -3531.599029 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -45.07700 -40.36307 -37.65704 -36.14916 -36.12209 -35.13932 -33.29231 -32.19940 -31.87994 -30.05122 -28.56662 -27.15736 -24.67949 -24.15047 -23.19115 -22.82127 -21.92247 -21.80742 -21.42183 -19.90376 -17.95200 -17.64823 -17.20610 -16.92671 -16.57280 -16.21239 -16.03742 -15.41117 -15.02506 -14.99724 -14.59957 -14.38973 -14.28006 -13.98168 -13.95766 -13.68069 -13.51912 -13.23448 -13.09199 -12.95356 -12.76020 -12.36594 -12.18569 -12.16151 -12.07743 -11.96968 -11.94373 -11.76542 -11.69326 -11.58496 -11.39978 -11.26123 -11.14609 -11.08647 -10.57507 -9.92132 -9.32358 -8.99383 -7.14993 -0.02314 0.43880 1.00383 1.39507 1.58807 1.60825 2.01821 2.13924 2.84238 3.02922 3.10133 3.34143 3.71787 3.80792 3.99704 4.02236 4.08088 4.10466 4.21987 4.27409 4.38281 4.48919 4.50335 4.54541 4.67232 4.75949 4.82569 4.84119 4.90407 4.90535 4.95099 5.05525 5.05781 5.11725 5.14177 5.14846 5.22717 5.28281 5.33890 5.36187 5.49586 5.52812 5.53867 5.60684 5.62746 5.68635 5.83544 5.98820 6.04159 6.22961 6.39891 8.02752 8.20600 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.033048 B = 0.001726 C = 0.001703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 847.044081 B =16217.101125 C =16435.517774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.128 4.128 3 C -0.117 4.117 4 C -0.122 4.122 5 C -0.113 4.113 6 C -0.112 4.112 7 C -0.072 4.072 8 C -0.068 4.068 9 C -0.114 4.114 10 C -0.091 4.091 11 C -0.037 4.037 12 C 0.197 3.803 13 N -0.487 5.487 14 O 0.017 5.983 15 C 0.269 3.731 16 C -0.432 4.432 17 H 0.124 0.876 18 C 0.028 3.972 19 N -0.795 5.795 20 Si 1.024 2.976 21 H -0.255 1.255 22 H -0.257 1.257 23 H -0.246 1.246 24 N -0.631 5.631 25 C -0.102 4.102 26 C -0.115 4.115 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.057 0.943 39 H 0.057 0.943 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.155 0.845 43 H 0.118 0.882 44 H 0.307 0.693 45 H 0.113 0.887 46 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.122 -3.836 1.843 23.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.166 4.166 3 C -0.155 4.155 4 C -0.159 4.159 5 C -0.151 4.151 6 C -0.150 4.150 7 C -0.110 4.110 8 C -0.068 4.068 9 C -0.132 4.132 10 C -0.111 4.111 11 C -0.038 4.038 12 C -0.074 4.074 13 N -0.221 5.221 14 O -0.027 6.027 15 C 0.081 3.919 16 C -0.469 4.469 17 H 0.142 0.858 18 C -0.194 4.194 19 N -0.422 5.422 20 Si 0.840 3.160 21 H -0.179 1.179 22 H -0.181 1.181 23 H -0.169 1.169 24 N -0.376 5.376 25 C -0.122 4.122 26 C -0.132 4.132 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.105 0.895 41 H 0.106 0.894 42 H 0.173 0.827 43 H 0.136 0.864 44 H 0.119 0.881 45 H 0.131 0.869 46 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -23.506 -3.841 1.171 23.846 hybrid contribution 1.453 -0.101 0.022 1.457 sum -22.053 -3.941 1.193 22.434 Atomic orbital electron populations 1.21783 0.95544 1.01784 1.01931 1.21565 0.96198 0.97057 1.01786 1.21602 0.95061 0.96675 1.02151 1.21610 0.95593 0.96978 1.01741 1.21564 0.94101 0.96763 1.02658 1.21562 0.95929 0.95437 1.02057 1.20663 0.87842 0.98033 1.04417 1.20344 0.97505 0.96876 0.92122 1.21233 0.91999 1.00484 0.99501 1.21230 0.95247 0.98231 0.96441 1.17804 0.85160 1.04908 0.95957 1.24157 0.97111 1.00243 0.85917 1.74480 0.90751 1.31951 1.24878 1.85436 1.19674 1.72495 1.25077 1.24846 0.94642 0.91757 0.80648 1.19181 0.86510 1.45506 0.95700 0.85820 1.27439 1.05063 0.90299 0.96575 1.69704 1.31288 1.29562 1.11621 0.84570 0.72884 0.80074 0.78437 1.17918 1.18063 1.16924 1.72326 0.99434 1.38059 1.27747 1.21209 0.95505 0.99277 0.96211 1.21189 0.91899 1.00614 0.99526 0.92618 0.92623 0.92608 0.92353 0.92328 0.91858 0.91894 0.92501 0.92453 0.91321 0.91363 0.92462 0.92390 0.89491 0.89397 0.82733 0.86416 0.88142 0.86878 0.82847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 9.91 71.98 0.71 -0.78 16 2 C -0.13 -1.43 5.93 30.60 0.18 -1.24 16 3 C -0.12 -1.29 5.21 30.59 0.16 -1.13 16 4 C -0.12 -1.51 5.21 30.59 0.16 -1.35 16 5 C -0.11 -1.34 5.21 30.59 0.16 -1.18 16 6 C -0.11 -1.70 5.20 30.59 0.16 -1.54 16 7 C -0.07 -1.15 5.34 29.85 0.16 -0.99 16 8 C -0.07 -1.65 5.14 -19.83 -0.10 -1.75 16 9 C -0.11 -3.17 9.68 22.24 0.22 -2.96 16 10 C -0.09 -3.47 9.70 22.48 0.22 -3.26 16 11 C -0.04 -1.64 5.88 -20.04 -0.12 -1.76 16 12 C 0.20 11.03 7.78 137.46 1.07 12.10 16 13 N -0.49 -29.09 11.84 -56.09 -0.66 -29.75 16 14 O 0.02 1.06 9.74 64.37 0.63 1.69 16 15 C 0.27 16.38 7.80 85.07 0.66 17.04 16 16 C -0.43 -23.57 9.47 23.33 0.22 -23.35 16 17 H 0.12 6.28 7.86 -2.91 -0.02 6.26 16 18 C 0.03 1.37 5.50 85.42 0.47 1.84 16 19 N -0.79 -41.24 12.08 21.91 0.26 -40.98 16 20 Si 1.02 34.94 29.57 68.60 2.03 36.97 16 21 H -0.26 -8.32 7.11 99.48 0.71 -7.61 16 22 H -0.26 -8.11 7.11 99.48 0.71 -7.41 16 23 H -0.25 -7.99 7.11 99.48 0.71 -7.28 16 24 N -0.63 -37.35 11.30 -305.12 -3.45 -40.80 16 25 C -0.10 -3.87 9.69 22.48 0.22 -3.65 16 26 C -0.11 -3.19 9.68 22.24 0.22 -2.97 16 27 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.05 0.50 8.14 -2.39 -0.02 0.49 16 29 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 33 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 39 H 0.06 0.96 8.14 -2.39 -0.02 0.95 16 40 H 0.09 1.16 8.08 -2.39 -0.02 1.14 16 41 H 0.09 1.17 8.08 -2.39 -0.02 1.15 16 42 H 0.16 3.20 8.06 -2.91 -0.02 3.18 16 43 H 0.12 4.72 7.86 -2.91 -0.02 4.70 16 44 H 0.31 13.81 8.29 -92.71 -0.77 13.04 16 45 H 0.11 4.51 7.86 -2.91 -0.02 4.48 16 46 H 0.15 3.21 8.06 -2.91 -0.02 3.19 16 Total: -1.00 -70.60 388.18 4.52 -66.08 By element: Atomic # 1 Polarization: 22.76 SS G_CDS: 0.95 Total: 23.71 kcal Atomic # 6 Polarization: -21.68 SS G_CDS: 4.76 Total: -16.92 kcal Atomic # 7 Polarization: -107.68 SS G_CDS: -3.85 Total: -111.53 kcal Atomic # 8 Polarization: 1.06 SS G_CDS: 0.63 Total: 1.69 kcal Atomic # 14 Polarization: 34.94 SS G_CDS: 2.03 Total: 36.97 kcal Total: -70.60 4.52 -66.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001247384646.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.781 kcal (2) G-P(sol) polarization free energy of solvation -70.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds