Wall clock time and date at job start Tue Mar 31 2020 12:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50702 * 119.99953 * 2 1 4 4 H 1.09000 * 109.47137 * 0.02562 * 3 2 1 5 5 C 1.50695 * 109.47115 * 239.99425 * 3 2 1 6 6 O 1.21281 * 120.00149 * 239.99983 * 5 3 2 7 7 N 1.34771 * 119.99890 * 60.00241 * 5 3 2 8 8 C 1.47087 * 120.88164 * 179.97438 * 7 5 3 9 9 C 1.53233 * 108.51817 * 231.20398 * 8 7 5 10 10 N 1.46905 * 109.34461 * 306.16600 * 9 8 7 11 11 C 1.46895 * 110.99974 * 187.25362 * 10 9 8 12 12 C 1.50702 * 109.46770 * 170.00187 * 11 10 9 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 11 10 14 14 C 1.37884 * 119.99942 * 179.72214 * 12 11 10 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 11 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 11 17 17 H 1.48501 * 109.47188 * 90.00793 * 16 14 12 18 18 H 1.48501 * 109.47085 * 210.00372 * 16 14 12 19 19 H 1.48498 * 109.47634 * 330.00608 * 16 14 12 20 20 C 1.46900 * 111.26196 * 63.11001 * 10 9 8 21 21 C 1.47077 * 120.88346 * 0.02562 * 7 5 3 22 22 C 1.50702 * 109.47119 * 119.99608 * 3 2 1 23 23 C 1.38234 * 120.00401 * 59.72544 * 22 3 2 24 24 C 1.38229 * 120.00309 * 179.81094 * 23 22 3 25 25 C 1.38233 * 120.00017 * 0.39888 * 24 23 22 26 26 C 1.38232 * 119.99844 * 359.85487 * 25 24 23 27 27 C 1.38232 * 120.00257 * 359.95952 * 26 25 24 28 28 H 1.07997 * 119.99978 * 179.97438 * 1 2 3 29 29 H 1.08002 * 119.99876 * 0.02562 * 1 2 3 30 30 H 1.08007 * 120.00231 * 179.97438 * 2 1 3 31 31 H 1.08999 * 109.62348 * 111.49529 * 8 7 5 32 32 H 1.08994 * 109.62751 * 350.91720 * 8 7 5 33 33 H 1.09003 * 109.49046 * 186.21182 * 9 8 7 34 34 H 1.08999 * 109.49709 * 66.12959 * 9 8 7 35 35 H 1.09004 * 109.47258 * 50.00511 * 11 10 9 36 36 H 1.08994 * 109.47601 * 290.00103 * 11 10 9 37 37 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 38 38 H 1.09001 * 109.49699 * 56.85399 * 20 10 9 39 39 H 1.09003 * 109.48977 * 176.93746 * 20 10 9 40 40 H 1.09005 * 109.63045 * 248.50602 * 21 7 5 41 41 H 1.08998 * 109.62824 * 9.08326 * 21 7 5 42 42 H 1.08007 * 119.99695 * 0.02562 * 23 22 3 43 43 H 1.08002 * 119.99908 * 180.23682 * 24 23 22 44 44 H 1.08007 * 120.00199 * 179.83569 * 25 24 23 45 45 H 1.08008 * 119.99819 * 179.97438 * 26 25 24 46 46 H 1.08008 * 120.00090 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3552 2.1336 0.0005 5 6 2.9300 1.3849 -1.2304 6 8 4.1326 1.4957 -1.1190 7 7 2.3685 1.3331 -2.4544 8 6 3.1957 1.4099 -3.6683 9 6 2.6169 2.4937 -4.5839 10 7 1.1925 2.2223 -4.8191 11 6 0.6416 3.1379 -5.8271 12 6 -0.7388 2.6794 -6.2212 13 1 -1.1645 1.7964 -5.7679 14 6 -1.4609 3.3907 -7.1560 15 7 -0.9426 4.4662 -7.7078 16 14 -3.1749 2.8266 -7.6388 17 1 -4.1757 3.4642 -6.7459 18 1 -3.4467 3.2173 -9.0455 19 1 -3.2652 1.3501 -7.5089 20 6 0.4236 2.2911 -3.5693 21 6 0.9123 1.1996 -2.6120 22 6 2.9299 1.3850 1.2305 23 6 3.9053 0.4309 1.4523 24 6 4.7025 0.5064 2.5790 25 6 4.5189 1.5313 3.4882 26 6 3.5400 2.4825 3.2691 27 6 2.7453 2.4092 2.1405 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8501 -0.9353 0.0004 31 1 3.1804 0.4492 -4.1830 32 1 4.2197 1.6673 -3.3979 33 1 3.1498 2.4892 -5.5348 34 1 2.7279 3.4685 -4.1089 35 1 1.2874 3.1427 -6.7053 36 1 0.5855 4.1442 -5.4120 37 1 -1.4505 4.9664 -8.3657 38 1 0.5651 3.2687 -3.1084 39 1 -0.6342 2.1396 -3.7843 40 1 0.6771 0.2186 -3.0251 41 1 0.4268 1.3180 -1.6434 42 1 4.0467 -0.3716 0.7435 43 1 5.4671 -0.2369 2.7503 44 1 5.1400 1.5889 4.3699 45 1 3.3963 3.2831 3.9797 46 1 1.9808 3.1526 1.9691 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001263884964.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:10 Heat of formation + Delta-G solvation = 26.509945 kcal Electronic energy + Delta-G solvation = -26155.065738 eV Core-core repulsion = 22624.325716 eV Total energy + Delta-G solvation = -3530.740022 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.61277 -39.01460 -37.44584 -35.55455 -34.26779 -32.40938 -31.38613 -30.96782 -30.72305 -28.55080 -27.17294 -25.29093 -23.32834 -22.82494 -22.35779 -21.62174 -20.96364 -19.88321 -18.60117 -17.40072 -16.87253 -16.40765 -15.86165 -15.48945 -15.31490 -14.77860 -14.74071 -14.44051 -14.35179 -13.91567 -13.74107 -13.56532 -13.52334 -13.24946 -12.87849 -12.52890 -12.40451 -12.32300 -11.92325 -11.57715 -11.30556 -11.22540 -11.07402 -11.02836 -10.92397 -10.77537 -10.64434 -10.54379 -10.16949 -9.91148 -9.30060 -9.19307 -8.95279 -8.81316 -8.52521 -8.42990 -7.34796 -6.08593 -4.10754 1.21465 1.34583 1.99372 2.71385 3.10963 3.27161 3.34163 3.37678 3.73350 4.36457 4.46569 4.55694 4.73518 4.77043 4.81997 4.91044 4.92338 5.02226 5.25431 5.26735 5.31692 5.40001 5.41358 5.52080 5.53431 5.65565 5.69078 5.76692 5.82831 5.89186 5.95266 6.03532 6.27019 6.31232 6.33807 6.39094 6.41691 6.43802 6.44859 6.52942 6.69100 6.90143 7.19813 7.25727 7.55197 7.72001 7.99291 8.09854 8.26038 8.45067 8.96434 9.53833 11.02235 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.024308 B = 0.002897 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.603254 B = 9662.429734 C =10089.707473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.146 4.146 3 C -0.040 4.040 4 H 0.106 0.894 5 C 0.522 3.478 6 O -0.540 6.540 7 N -0.602 5.602 8 C 0.118 3.882 9 C 0.041 3.959 10 N -0.535 5.535 11 C 0.193 3.807 12 C -0.510 4.510 13 H 0.064 0.936 14 C 0.056 3.944 15 N -0.897 5.897 16 Si 0.898 3.102 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.272 1.272 20 C 0.049 3.951 21 C 0.102 3.898 22 C -0.059 4.059 23 C -0.082 4.082 24 C -0.123 4.123 25 C -0.122 4.122 26 C -0.124 4.124 27 C -0.112 4.112 28 H 0.108 0.892 29 H 0.103 0.897 30 H 0.116 0.884 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.081 0.919 34 H 0.026 0.974 35 H 0.032 0.968 36 H -0.009 1.009 37 H 0.262 0.738 38 H 0.023 0.977 39 H 0.097 0.903 40 H 0.075 0.925 41 H 0.087 0.913 42 H 0.118 0.882 43 H 0.120 0.880 44 H 0.119 0.881 45 H 0.120 0.880 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.083 -7.709 20.102 22.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.164 4.164 3 C -0.062 4.062 4 H 0.124 0.876 5 C 0.309 3.691 6 O -0.418 6.418 7 N -0.335 5.335 8 C -0.005 4.005 9 C -0.088 4.088 10 N -0.260 5.260 11 C 0.069 3.931 12 C -0.548 4.548 13 H 0.082 0.918 14 C -0.146 4.146 15 N -0.537 5.537 16 Si 0.726 3.274 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.197 1.197 20 C -0.081 4.081 21 C -0.021 4.021 22 C -0.059 4.059 23 C -0.100 4.100 24 C -0.141 4.141 25 C -0.140 4.140 26 C -0.142 4.142 27 C -0.130 4.130 28 H 0.126 0.874 29 H 0.121 0.879 30 H 0.134 0.866 31 H 0.091 0.909 32 H 0.105 0.895 33 H 0.099 0.901 34 H 0.044 0.956 35 H 0.050 0.950 36 H 0.009 0.991 37 H 0.071 0.929 38 H 0.041 0.959 39 H 0.115 0.885 40 H 0.094 0.906 41 H 0.105 0.895 42 H 0.136 0.864 43 H 0.138 0.862 44 H 0.137 0.863 45 H 0.138 0.862 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 6.645 -7.977 19.812 22.368 hybrid contribution -0.945 0.751 -0.227 1.228 sum 5.700 -7.226 19.585 21.640 Atomic orbital electron populations 1.23963 0.95413 1.02683 0.98991 1.22573 0.95813 0.96612 1.01386 1.19479 0.96791 0.98463 0.91429 0.87621 1.20218 0.88355 0.76423 0.84055 1.90688 1.14804 1.50109 1.86189 1.48184 1.08424 1.71505 1.05370 1.21761 0.94810 0.99821 0.84090 1.22404 0.91850 0.95768 0.98816 1.62088 0.99976 1.55271 1.08676 1.19727 0.95411 0.88899 0.89104 1.21132 0.99617 1.11051 1.23008 0.91800 1.25001 0.98473 0.94953 0.96173 1.69961 1.37789 1.17325 1.28606 0.86498 0.84140 0.79058 0.77728 1.20729 1.21244 1.19721 1.22355 1.00167 0.95496 0.90045 1.22325 0.78945 1.00575 1.00239 1.19212 0.96571 0.95737 0.94384 1.20892 0.94327 0.98334 0.96431 1.21099 0.99529 0.98763 0.94723 1.21120 0.98330 0.95168 0.99383 1.21053 0.96311 0.99160 0.97652 1.21007 0.99861 0.97634 0.94464 0.87422 0.87853 0.86634 0.90946 0.89454 0.90069 0.95591 0.95032 0.99139 0.92853 0.95861 0.88480 0.90634 0.89481 0.86386 0.86212 0.86326 0.86151 0.86162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.45 12.41 29.01 0.36 -1.09 16 2 C -0.15 -1.43 7.19 -36.03 -0.26 -1.69 16 3 C -0.04 -0.47 1.94 -94.08 -0.18 -0.66 16 4 H 0.11 1.13 7.04 -51.93 -0.37 0.76 16 5 C 0.52 7.78 6.96 -10.99 -0.08 7.70 16 6 O -0.54 -9.61 14.58 5.56 0.08 -9.53 16 7 N -0.60 -9.04 3.01 -172.50 -0.52 -9.56 16 8 C 0.12 1.85 6.60 -3.60 -0.02 1.82 16 9 C 0.04 0.74 5.62 -3.70 -0.02 0.72 16 10 N -0.53 -11.03 4.62 -235.79 -1.09 -12.12 16 11 C 0.19 4.89 4.72 -4.98 -0.02 4.86 16 12 C -0.51 -13.74 8.41 -34.44 -0.29 -14.03 16 13 H 0.06 1.68 7.13 -52.49 -0.37 1.31 16 14 C 0.06 1.53 5.46 -17.82 -0.10 1.44 16 15 N -0.90 -26.17 13.29 55.43 0.74 -25.44 16 16 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 17 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 18 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 19 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 20 C 0.05 0.87 5.45 -3.73 -0.02 0.85 16 21 C 0.10 1.43 5.53 -3.63 -0.02 1.41 16 22 C -0.06 -0.71 4.38 -104.62 -0.46 -1.17 16 23 C -0.08 -0.98 8.04 -39.59 -0.32 -1.30 16 24 C -0.12 -1.30 10.05 -39.59 -0.40 -1.70 16 25 C -0.12 -1.19 10.05 -39.59 -0.40 -1.59 16 26 C -0.12 -1.23 10.05 -39.59 -0.40 -1.63 16 27 C -0.11 -1.22 9.67 -39.58 -0.38 -1.61 16 28 H 0.11 0.76 8.06 -52.49 -0.42 0.34 16 29 H 0.10 0.80 7.30 -52.49 -0.38 0.41 16 30 H 0.12 1.10 8.00 -52.48 -0.42 0.68 16 31 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 32 H 0.09 1.37 7.06 -51.93 -0.37 1.00 16 33 H 0.08 1.42 7.99 -51.93 -0.41 1.00 16 34 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.03 0.86 7.97 -51.93 -0.41 0.44 16 36 H -0.01 -0.25 8.12 -51.93 -0.42 -0.67 16 37 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.10 1.84 6.67 -51.93 -0.35 1.49 16 40 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.09 1.00 3.31 -51.93 -0.17 0.83 16 42 H 0.12 1.40 7.95 -52.48 -0.42 0.99 16 43 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 44 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 45 H 0.12 0.92 8.06 -52.48 -0.42 0.49 16 46 H 0.12 1.11 7.95 -52.48 -0.42 0.70 16 LS Contribution 368.48 15.07 5.55 5.55 Total: -1.00 -31.57 368.48 -10.30 -41.87 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -7.03 Total: 0.91 kcal Atomic # 6 Polarization: -4.63 SS G_CDS: -3.01 Total: -7.64 kcal Atomic # 7 Polarization: -46.24 SS G_CDS: -0.87 Total: -47.11 kcal Atomic # 8 Polarization: -9.61 SS G_CDS: 0.08 Total: -9.53 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -31.57 -10.30 -41.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263884964.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.378 kcal (2) G-P(sol) polarization free energy of solvation -31.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.868 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds