Wall clock time and date at job start Tue Mar 31 2020 12:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50702 * 119.99953 * 2 1 4 4 H 1.09000 * 109.47137 * 0.02562 * 3 2 1 5 5 C 1.50695 * 109.47115 * 239.99425 * 3 2 1 6 6 O 1.21281 * 120.00149 * 239.99983 * 5 3 2 7 7 N 1.34771 * 119.99890 * 60.00241 * 5 3 2 8 8 C 1.47087 * 120.88164 * 179.97438 * 7 5 3 9 9 C 1.53233 * 108.51817 * 231.20398 * 8 7 5 10 10 N 1.46905 * 109.34461 * 306.16600 * 9 8 7 11 11 C 1.46895 * 110.99974 * 187.25362 * 10 9 8 12 12 C 1.50702 * 109.46770 * 170.00187 * 11 10 9 13 13 H 1.08002 * 120.00299 * 0.02562 * 12 11 10 14 14 C 1.37884 * 119.99942 * 179.72214 * 12 11 10 15 15 N 1.31514 * 119.99698 * 0.28408 * 14 12 11 16 16 Si 1.86794 * 119.99837 * 180.27476 * 14 12 11 17 17 H 1.48501 * 109.47188 * 90.00793 * 16 14 12 18 18 H 1.48501 * 109.47085 * 210.00372 * 16 14 12 19 19 H 1.48498 * 109.47634 * 330.00608 * 16 14 12 20 20 C 1.46900 * 111.26196 * 63.11001 * 10 9 8 21 21 C 1.47077 * 120.88346 * 0.02562 * 7 5 3 22 22 C 1.50702 * 109.47119 * 119.99608 * 3 2 1 23 23 C 1.38234 * 120.00401 * 59.72544 * 22 3 2 24 24 C 1.38229 * 120.00309 * 179.81094 * 23 22 3 25 25 C 1.38233 * 120.00017 * 0.39888 * 24 23 22 26 26 C 1.38232 * 119.99844 * 359.85487 * 25 24 23 27 27 C 1.38232 * 120.00257 * 359.95952 * 26 25 24 28 28 H 1.07997 * 119.99978 * 179.97438 * 1 2 3 29 29 H 1.08002 * 119.99876 * 0.02562 * 1 2 3 30 30 H 1.08007 * 120.00231 * 179.97438 * 2 1 3 31 31 H 1.08999 * 109.62348 * 111.49529 * 8 7 5 32 32 H 1.08994 * 109.62751 * 350.91720 * 8 7 5 33 33 H 1.09003 * 109.49046 * 186.21182 * 9 8 7 34 34 H 1.08999 * 109.49709 * 66.12959 * 9 8 7 35 35 H 1.09004 * 109.47258 * 50.00511 * 11 10 9 36 36 H 1.08994 * 109.47601 * 290.00103 * 11 10 9 37 37 H 0.97005 * 119.99651 * 179.97438 * 15 14 12 38 38 H 1.09001 * 109.49699 * 56.85399 * 20 10 9 39 39 H 1.09003 * 109.48977 * 176.93746 * 20 10 9 40 40 H 1.09005 * 109.63045 * 248.50602 * 21 7 5 41 41 H 1.08998 * 109.62824 * 9.08326 * 21 7 5 42 42 H 1.08007 * 119.99695 * 0.02562 * 23 22 3 43 43 H 1.08002 * 119.99908 * 180.23682 * 24 23 22 44 44 H 1.08007 * 120.00199 * 179.83569 * 25 24 23 45 45 H 1.08008 * 119.99819 * 179.97438 * 26 25 24 46 46 H 1.08008 * 120.00090 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3552 2.1336 0.0005 5 6 2.9300 1.3849 -1.2304 6 8 4.1326 1.4957 -1.1190 7 7 2.3685 1.3331 -2.4544 8 6 3.1957 1.4099 -3.6683 9 6 2.6169 2.4937 -4.5839 10 7 1.1925 2.2223 -4.8191 11 6 0.6416 3.1379 -5.8271 12 6 -0.7388 2.6794 -6.2212 13 1 -1.1645 1.7964 -5.7679 14 6 -1.4609 3.3907 -7.1560 15 7 -0.9426 4.4662 -7.7078 16 14 -3.1749 2.8266 -7.6388 17 1 -4.1757 3.4642 -6.7459 18 1 -3.4467 3.2173 -9.0455 19 1 -3.2652 1.3501 -7.5089 20 6 0.4236 2.2911 -3.5693 21 6 0.9123 1.1996 -2.6120 22 6 2.9299 1.3850 1.2305 23 6 3.9053 0.4309 1.4523 24 6 4.7025 0.5064 2.5790 25 6 4.5189 1.5313 3.4882 26 6 3.5400 2.4825 3.2691 27 6 2.7453 2.4092 2.1405 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8501 -0.9353 0.0004 31 1 3.1804 0.4492 -4.1830 32 1 4.2197 1.6673 -3.3979 33 1 3.1498 2.4892 -5.5348 34 1 2.7279 3.4685 -4.1089 35 1 1.2874 3.1427 -6.7053 36 1 0.5855 4.1442 -5.4120 37 1 -1.4505 4.9664 -8.3657 38 1 0.5651 3.2687 -3.1084 39 1 -0.6342 2.1396 -3.7843 40 1 0.6771 0.2186 -3.0251 41 1 0.4268 1.3180 -1.6434 42 1 4.0467 -0.3716 0.7435 43 1 5.4671 -0.2369 2.7503 44 1 5.1400 1.5889 4.3699 45 1 3.3963 3.2831 3.9797 46 1 1.9808 3.1526 1.9691 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263884964.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:09 Heat of formation + Delta-G solvation = 8.236465 kcal Electronic energy + Delta-G solvation = -26155.858136 eV Core-core repulsion = 22624.325716 eV Total energy + Delta-G solvation = -3531.532420 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.70991 -40.00555 -38.82990 -36.52445 -35.76264 -34.32862 -32.25269 -31.99628 -31.73598 -30.14411 -28.39778 -26.85416 -24.70779 -23.96718 -23.59536 -22.77990 -22.07437 -20.93917 -19.75610 -18.49371 -18.44496 -17.76724 -17.03830 -16.69308 -16.45742 -16.15056 -16.02468 -15.74712 -15.45841 -15.32611 -15.21904 -14.65612 -14.51846 -14.18319 -14.08260 -13.88448 -13.56134 -13.43758 -13.25254 -13.04472 -12.75370 -12.60978 -12.52144 -12.35501 -12.17259 -12.11174 -11.96550 -11.80718 -11.72198 -11.28388 -11.20525 -10.61677 -10.09624 -9.79493 -9.74509 -9.60988 -9.07480 -8.19886 -6.30382 0.41523 0.55098 1.25750 1.43955 1.45509 1.56929 1.59189 1.94874 2.41643 2.91763 3.12633 3.21442 3.50636 3.70652 3.86069 3.95909 4.01193 4.04412 4.18630 4.19571 4.22083 4.28245 4.30224 4.41971 4.50413 4.54957 4.66060 4.72026 4.77734 4.82646 4.92294 5.00756 5.04997 5.09734 5.18017 5.18419 5.22178 5.42840 5.57602 5.63985 5.64193 5.65040 5.66031 5.74837 6.02062 6.13317 6.22305 6.41104 6.54808 6.85606 7.08110 7.39788 8.91594 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.024308 B = 0.002897 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.603254 B = 9662.429734 C =10089.707473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.163 4.163 3 C -0.033 4.033 4 H 0.117 0.883 5 C 0.521 3.479 6 O -0.572 6.572 7 N -0.606 5.606 8 C 0.126 3.874 9 C 0.044 3.956 10 N -0.538 5.538 11 C 0.208 3.792 12 C -0.520 4.520 13 H 0.071 0.929 14 C 0.000 4.000 15 N -0.937 5.937 16 Si 0.971 3.029 17 H -0.271 1.271 18 H -0.287 1.287 19 H -0.261 1.261 20 C 0.048 3.952 21 C 0.116 3.884 22 C -0.076 4.076 23 C -0.101 4.101 24 C -0.133 4.133 25 C -0.126 4.126 26 C -0.129 4.129 27 C -0.125 4.125 28 H 0.125 0.875 29 H 0.113 0.887 30 H 0.115 0.885 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.013 0.987 35 H 0.004 0.996 36 H -0.041 1.041 37 H 0.264 0.736 38 H 0.014 0.986 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.118 0.882 42 H 0.109 0.891 43 H 0.136 0.864 44 H 0.144 0.856 45 H 0.144 0.856 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.698 -8.991 21.996 24.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.181 4.181 3 C -0.054 4.054 4 H 0.135 0.865 5 C 0.310 3.690 6 O -0.452 6.452 7 N -0.338 5.338 8 C 0.003 3.997 9 C -0.085 4.085 10 N -0.263 5.263 11 C 0.082 3.918 12 C -0.558 4.558 13 H 0.089 0.911 14 C -0.198 4.198 15 N -0.578 5.578 16 Si 0.795 3.205 17 H -0.197 1.197 18 H -0.213 1.213 19 H -0.185 1.185 20 C -0.081 4.081 21 C -0.006 4.006 22 C -0.077 4.077 23 C -0.119 4.119 24 C -0.151 4.151 25 C -0.144 4.144 26 C -0.146 4.146 27 C -0.143 4.143 28 H 0.143 0.857 29 H 0.131 0.869 30 H 0.133 0.867 31 H 0.100 0.900 32 H 0.106 0.894 33 H 0.099 0.901 34 H 0.032 0.968 35 H 0.022 0.978 36 H -0.024 1.024 37 H 0.072 0.928 38 H 0.032 0.968 39 H 0.107 0.893 40 H 0.102 0.898 41 H 0.135 0.865 42 H 0.128 0.872 43 H 0.154 0.846 44 H 0.162 0.838 45 H 0.162 0.838 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 5.259 -9.280 21.734 24.210 hybrid contribution -0.445 1.182 -0.763 1.475 sum 4.814 -8.098 20.971 22.990 Atomic orbital electron populations 1.24209 0.94812 1.04013 0.96375 1.22490 0.96282 0.95662 1.03677 1.19454 0.96434 0.99941 0.89535 0.86509 1.20836 0.88349 0.75137 0.84667 1.90668 1.16454 1.51413 1.86665 1.48260 1.08683 1.71545 1.05325 1.21606 0.94764 0.99162 0.84125 1.22426 0.90488 0.96185 0.99439 1.62024 1.01376 1.53504 1.09363 1.19378 0.94906 0.88221 0.89287 1.21451 1.00227 1.11165 1.22987 0.91093 1.25956 1.02879 0.94893 0.96081 1.70103 1.39656 1.18703 1.29335 0.85352 0.78782 0.79107 0.77210 1.19679 1.21271 1.18470 1.22419 0.99581 0.96635 0.89474 1.22303 0.78466 0.99222 1.00624 1.19368 0.97070 0.96345 0.94905 1.20978 0.95234 0.98593 0.97094 1.21383 0.99681 0.99558 0.94491 1.21474 0.98400 0.94562 0.99918 1.21412 0.95821 0.99703 0.97694 1.21280 1.00593 0.97670 0.94769 0.85709 0.86859 0.86721 0.89966 0.89401 0.90098 0.96834 0.97833 1.02380 0.92758 0.96806 0.89285 0.89774 0.86466 0.87245 0.84628 0.83833 0.83814 0.84817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.13 12.41 67.78 0.84 -1.28 16 2 C -0.16 -2.87 7.19 25.65 0.18 -2.68 16 3 C -0.03 -0.72 1.94 -13.03 -0.03 -0.74 16 4 H 0.12 2.25 7.04 -2.39 -0.02 2.24 16 5 C 0.52 15.16 6.96 87.66 0.61 15.77 16 6 O -0.57 -20.39 14.58 -3.03 -0.04 -20.43 16 7 N -0.61 -17.62 3.01 -818.05 -2.46 -20.08 16 8 C 0.13 3.93 6.60 86.35 0.57 4.50 16 9 C 0.04 1.61 5.62 86.38 0.49 2.09 16 10 N -0.54 -22.48 4.62 -899.92 -4.16 -26.63 16 11 C 0.21 10.90 4.72 85.56 0.40 11.31 16 12 C -0.52 -28.30 8.41 25.60 0.22 -28.08 16 13 H 0.07 3.69 7.13 -2.91 -0.02 3.66 16 14 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 15 N -0.94 -55.78 13.29 21.45 0.28 -55.50 16 16 Si 0.97 42.72 29.54 68.60 2.03 44.75 16 17 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 18 H -0.29 -12.56 7.11 99.48 0.71 -11.85 16 19 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 20 C 0.05 1.69 5.45 86.37 0.47 2.16 16 21 C 0.12 3.06 5.53 86.33 0.48 3.54 16 22 C -0.08 -1.78 4.38 -19.86 -0.09 -1.86 16 23 C -0.10 -2.38 8.04 22.27 0.18 -2.20 16 24 C -0.13 -2.67 10.05 22.27 0.22 -2.45 16 25 C -0.13 -2.21 10.05 22.27 0.22 -1.98 16 26 C -0.13 -2.29 10.05 22.27 0.22 -2.07 16 27 C -0.13 -2.56 9.67 22.27 0.22 -2.34 16 28 H 0.12 1.30 8.06 -2.91 -0.02 1.28 16 29 H 0.11 1.32 7.30 -2.91 -0.02 1.30 16 30 H 0.11 2.03 8.00 -2.91 -0.02 2.01 16 31 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 32 H 0.09 2.76 7.06 -2.39 -0.02 2.74 16 33 H 0.08 2.93 7.99 -2.39 -0.02 2.91 16 34 H 0.01 0.52 8.14 -2.39 -0.02 0.51 16 35 H 0.00 0.20 7.97 -2.38 -0.02 0.18 16 36 H -0.04 -2.39 8.12 -2.39 -0.02 -2.41 16 37 H 0.26 14.78 8.31 -92.70 -0.77 14.01 16 38 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 39 H 0.09 3.30 6.67 -2.39 -0.02 3.29 16 40 H 0.08 2.15 8.14 -2.38 -0.02 2.13 16 41 H 0.12 2.39 3.31 -2.39 -0.01 2.38 16 42 H 0.11 2.65 7.95 -2.91 -0.02 2.63 16 43 H 0.14 2.13 8.06 -2.91 -0.02 2.11 16 44 H 0.14 1.71 8.06 -2.91 -0.02 1.69 16 45 H 0.14 1.80 8.06 -2.91 -0.02 1.77 16 46 H 0.13 2.23 7.95 -2.91 -0.02 2.21 16 Total: -1.00 -69.33 368.48 2.27 -67.05 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: 0.95 Total: 16.74 kcal Atomic # 6 Polarization: -11.56 SS G_CDS: 5.67 Total: -5.89 kcal Atomic # 7 Polarization: -95.88 SS G_CDS: -6.34 Total: -102.22 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: -0.04 Total: -20.43 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -69.33 2.27 -67.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263884964.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.290 kcal (2) G-P(sol) polarization free energy of solvation -69.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds