Wall clock time and date at job start Tue Mar 31 2020 11:31:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52996 * 109.47432 * 2 1 4 4 C 1.52993 * 109.47289 * 120.00029 * 2 1 3 5 5 N 1.46505 * 109.47093 * 64.99850 * 4 2 1 6 6 C 1.46506 * 119.99813 * 270.00036 * 5 4 2 7 7 C 1.50695 * 109.46918 * 269.99930 * 6 5 4 8 8 H 1.08000 * 120.00583 * 359.97438 * 7 6 5 9 9 C 1.37878 * 119.99937 * 180.02562 * 7 6 5 10 10 N 1.31516 * 119.99656 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 120.00295 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47025 * 359.97438 * 11 9 7 13 13 H 1.48504 * 109.47187 * 119.99454 * 11 9 7 14 14 H 1.48494 * 109.47548 * 239.99811 * 11 9 7 15 15 C 1.34775 * 120.00218 * 89.99634 * 5 4 2 16 16 O 1.21278 * 120.00033 * 179.97438 * 15 5 4 17 17 C 1.50702 * 119.99880 * 0.02562 * 15 5 4 18 18 N 1.46500 * 109.47226 * 179.97438 * 17 15 5 19 19 C 1.36831 * 125.06347 * 265.30227 * 18 17 15 20 20 C 1.34242 * 109.92830 * 180.14700 * 19 18 17 21 21 C 1.46491 * 106.99712 * 359.60332 * 20 19 18 22 22 C 1.39630 * 134.02857 * 180.21673 * 21 20 19 23 23 C 1.36627 * 119.76400 * 179.97438 * 22 21 20 24 24 C 1.38830 * 120.52420 * 0.03970 * 23 22 21 25 25 C 1.37746 * 120.67032 * 359.97438 * 24 23 22 26 26 C 1.37685 * 125.06129 * 85.00005 * 18 17 15 27 27 H 1.09000 * 109.47092 * 59.99502 * 1 2 3 28 28 H 1.08994 * 109.47259 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46887 * 300.00524 * 1 2 3 30 30 H 1.09008 * 109.46701 * 240.00315 * 2 1 3 31 31 H 1.08996 * 109.47553 * 180.02562 * 3 2 1 32 32 H 1.09006 * 109.47049 * 300.00037 * 3 2 1 33 33 H 1.09000 * 109.47513 * 59.99859 * 3 2 1 34 34 H 1.09000 * 109.47394 * 305.00012 * 4 2 1 35 35 H 1.09002 * 109.47505 * 184.99601 * 4 2 1 36 36 H 1.08996 * 109.47173 * 30.00017 * 6 5 4 37 37 H 1.09002 * 109.46873 * 150.00227 * 6 5 4 38 38 H 0.97003 * 119.99750 * 180.02562 * 10 9 7 39 39 H 1.09008 * 109.47109 * 60.00030 * 17 15 5 40 40 H 1.08998 * 109.47260 * 299.99591 * 17 15 5 41 41 H 1.07993 * 125.03787 * 0.02931 * 19 18 17 42 42 H 1.08002 * 126.50514 * 179.87275 * 20 19 18 43 43 H 1.07993 * 120.11544 * 0.02562 * 22 21 20 44 44 H 1.07994 * 119.73661 * 180.02562 * 23 22 21 45 45 H 1.08005 * 119.66510 * 180.02562 * 24 23 22 46 46 H 1.08006 * 120.11165 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 1.6524 -2.1328 1.1905 6 6 0.3745 -2.5659 1.7613 7 6 0.5716 -2.9408 3.2075 8 1 1.5509 -2.8645 3.6565 9 6 -0.4980 -3.3821 3.9572 10 7 -1.6904 -3.4754 3.4103 11 14 -0.2536 -3.8475 5.7497 12 1 1.1713 -3.6553 6.1211 13 1 -1.1091 -2.9868 6.6057 14 1 -0.6285 -5.2707 5.9472 15 6 2.4714 -3.0331 0.6114 16 8 2.1507 -4.2017 0.5633 17 6 3.7861 -2.5877 0.0248 18 7 4.4859 -3.7444 -0.5397 19 6 5.4295 -4.4884 0.1148 20 6 5.8730 -5.4710 -0.6852 21 6 5.1477 -5.3518 -1.9523 22 6 5.1633 -6.0685 -3.1506 23 6 4.3411 -5.6942 -4.1755 24 6 3.4903 -4.6061 -4.0356 25 6 3.4590 -3.8850 -2.8624 26 6 4.2878 -4.2483 -1.8056 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 3.1300 1.4425 -0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6768 1.9564 0.8899 34 1 1.6054 -0.2618 2.1369 35 1 3.1263 -0.6444 1.2951 36 1 -0.3485 -1.7531 1.6919 37 1 0.0042 -3.4298 1.2092 38 1 -2.4430 -3.7855 3.9379 39 1 4.3991 -2.1384 0.8062 40 1 3.6037 -1.8543 -0.7607 41 1 5.7687 -4.3104 1.1245 42 1 6.6194 -6.2119 -0.4395 43 1 5.8224 -6.9161 -3.2664 44 1 4.3532 -6.2491 -5.1019 45 1 2.8458 -4.3226 -4.8546 46 1 2.7939 -3.0398 -2.7634 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318118599.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:31:05 Heat of formation + Delta-G solvation = 3.769520 kcal Electronic energy + Delta-G solvation = -26513.339991 eV Core-core repulsion = 22981.613871 eV Total energy + Delta-G solvation = -3531.726121 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.32421 -40.70020 -38.05537 -37.65212 -35.42626 -34.22469 -33.81140 -31.52480 -30.04523 -29.67492 -27.99694 -27.75157 -26.85575 -24.72123 -23.53102 -22.47363 -21.56466 -21.27575 -20.04600 -18.71833 -18.30745 -18.03247 -17.37873 -17.00903 -16.33946 -16.28946 -16.13764 -15.74459 -15.22891 -15.03955 -14.75181 -14.62551 -14.33059 -14.23996 -13.91597 -13.68319 -13.57242 -13.45185 -13.14055 -13.03950 -12.93351 -12.73307 -12.59449 -12.48261 -12.44371 -12.19045 -12.13764 -11.84503 -11.73584 -11.57424 -11.53381 -10.89268 -10.65735 -10.47222 -9.45642 -9.06255 -8.55411 -8.24796 -6.39151 0.24819 0.73127 1.33109 1.35935 1.46798 1.63195 1.67714 1.94331 2.29827 2.44326 3.03639 3.05367 3.52834 3.72954 3.77453 3.87328 3.97087 4.03008 4.07767 4.17313 4.21617 4.29999 4.56244 4.59510 4.62134 4.66794 4.80045 4.81234 4.89982 4.94475 5.00903 5.03952 5.07391 5.11584 5.18915 5.20147 5.28321 5.41773 5.48449 5.56708 5.58636 5.71558 5.81719 5.89343 5.92809 6.04848 6.33805 6.34617 6.66726 6.73459 7.24144 7.39577 8.82269 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.011876 B = 0.004278 C = 0.003613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2357.204216 B = 6543.525027 C = 7747.332732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.107 4.107 3 C -0.136 4.136 4 C 0.105 3.895 5 N -0.592 5.592 6 C 0.263 3.737 7 C -0.541 4.541 8 H 0.054 0.946 9 C 0.008 3.992 10 N -0.928 5.928 11 Si 0.965 3.035 12 H -0.265 1.265 13 H -0.269 1.269 14 H -0.285 1.285 15 C 0.477 3.523 16 O -0.586 6.586 17 C 0.101 3.899 18 N -0.474 5.474 19 C 0.050 3.950 20 C -0.219 4.219 21 C -0.137 4.137 22 C -0.084 4.084 23 C -0.153 4.153 24 C -0.107 4.107 25 C -0.146 4.146 26 C 0.082 3.918 27 H 0.066 0.934 28 H 0.027 0.973 29 H 0.050 0.950 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.075 0.925 35 H 0.105 0.895 36 H 0.037 0.963 37 H -0.014 1.014 38 H 0.266 0.734 39 H 0.151 0.849 40 H 0.135 0.865 41 H 0.190 0.810 42 H 0.167 0.833 43 H 0.141 0.859 44 H 0.149 0.851 45 H 0.146 0.854 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.260 7.502 -11.417 20.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.127 4.127 3 C -0.194 4.194 4 C -0.017 4.017 5 N -0.322 5.322 6 C 0.142 3.858 7 C -0.580 4.580 8 H 0.072 0.928 9 C -0.191 4.191 10 N -0.568 5.568 11 Si 0.790 3.210 12 H -0.189 1.189 13 H -0.194 1.194 14 H -0.211 1.211 15 C 0.264 3.736 16 O -0.466 6.466 17 C -0.024 4.024 18 N -0.156 5.156 19 C -0.074 4.074 20 C -0.243 4.243 21 C -0.141 4.141 22 C -0.102 4.102 23 C -0.172 4.172 24 C -0.126 4.126 25 C -0.167 4.167 26 C -0.024 4.024 27 H 0.085 0.915 28 H 0.046 0.954 29 H 0.069 0.931 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.094 0.906 35 H 0.123 0.877 36 H 0.055 0.945 37 H 0.004 0.996 38 H 0.075 0.925 39 H 0.168 0.832 40 H 0.152 0.848 41 H 0.207 0.793 42 H 0.185 0.815 43 H 0.159 0.841 44 H 0.167 0.833 45 H 0.164 0.836 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 14.758 7.148 -11.225 19.872 hybrid contribution -0.918 -0.607 1.232 1.652 sum 13.840 6.541 -9.993 18.281 Atomic orbital electron populations 1.21897 0.96342 1.00529 1.01785 1.21546 0.95633 0.97982 0.97502 1.21733 1.01938 0.93145 1.02579 1.21974 1.01327 0.79226 0.99180 1.48190 1.20017 1.08573 1.55424 1.18820 0.81011 0.94176 0.91788 1.21763 0.94959 1.44624 0.96649 0.92790 1.25835 0.94735 0.95176 1.03371 1.70062 1.00714 1.47702 1.38362 0.85406 0.78630 0.77775 0.79235 1.18906 1.19360 1.21136 1.21570 0.87229 0.85813 0.78951 1.90712 1.76026 1.20004 1.59903 1.21841 0.90990 0.87621 1.01940 1.43638 1.34138 1.26977 1.10881 1.22309 0.92312 0.93749 0.99033 1.21951 1.06537 1.02942 0.92866 1.19660 1.00288 0.97560 0.96628 1.20586 0.99369 0.99085 0.91162 1.20957 0.97747 0.98489 1.00044 1.21127 0.99294 0.95580 0.96632 1.20256 1.00406 1.02992 0.93008 1.18582 1.00059 0.96922 0.86852 0.91528 0.95428 0.93074 0.91197 0.90570 0.91613 0.92332 0.90613 0.87730 0.94476 0.99618 0.92507 0.83187 0.84773 0.79284 0.81541 0.84119 0.83345 0.83643 0.86702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.30 8.18 71.98 0.59 -3.71 16 2 C -0.11 -2.49 3.12 -10.80 -0.03 -2.53 16 3 C -0.14 -2.16 9.19 71.98 0.66 -1.50 16 4 C 0.11 2.93 4.70 86.38 0.41 3.34 16 5 N -0.59 -23.82 2.28 -826.15 -1.88 -25.71 16 6 C 0.26 13.97 4.23 85.63 0.36 14.33 16 7 C -0.54 -30.93 9.39 25.60 0.24 -30.69 16 8 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 9 C 0.01 0.44 5.46 84.65 0.46 0.91 16 10 N -0.93 -56.46 13.29 21.45 0.28 -56.17 16 11 Si 0.96 44.97 29.54 68.60 2.03 47.00 16 12 H -0.26 -11.85 7.11 99.48 0.71 -11.15 16 13 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 14 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 15 C 0.48 19.40 7.74 87.66 0.68 20.08 16 16 O -0.59 -31.34 16.00 -3.02 -0.05 -31.39 16 17 C 0.10 2.76 5.03 85.63 0.43 3.19 16 18 N -0.47 -14.72 2.27 -519.98 -1.18 -15.90 16 19 C 0.05 1.41 11.27 83.00 0.94 2.35 16 20 C -0.22 -6.11 11.08 23.51 0.26 -5.85 16 21 C -0.14 -4.27 6.37 -20.20 -0.13 -4.40 16 22 C -0.08 -2.19 10.05 22.23 0.22 -1.97 16 23 C -0.15 -3.65 9.97 22.03 0.22 -3.43 16 24 C -0.11 -2.75 10.01 22.30 0.22 -2.52 16 25 C -0.15 -4.45 10.00 22.37 0.22 -4.23 16 26 C 0.08 2.70 6.80 39.03 0.27 2.97 16 27 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.03 1.01 5.89 -2.39 -0.01 0.99 16 29 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.07 1.57 7.30 -2.38 -0.02 1.55 16 31 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 33 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.08 2.30 8.07 -2.39 -0.02 2.28 16 35 H 0.10 2.05 6.44 -2.39 -0.02 2.04 16 36 H 0.04 1.98 5.98 -2.39 -0.01 1.97 16 37 H -0.01 -0.91 7.42 -2.39 -0.02 -0.93 16 38 H 0.27 15.18 8.31 -92.71 -0.77 14.40 16 39 H 0.15 2.91 7.38 -2.38 -0.02 2.89 16 40 H 0.13 2.89 7.26 -2.39 -0.02 2.87 16 41 H 0.19 4.06 8.06 -2.91 -0.02 4.03 16 42 H 0.17 3.64 8.06 -2.91 -0.02 3.61 16 43 H 0.14 2.88 8.06 -2.91 -0.02 2.85 16 44 H 0.15 2.51 8.06 -2.91 -0.02 2.49 16 45 H 0.15 2.85 8.06 -2.91 -0.02 2.82 16 46 H 0.11 3.29 8.06 -2.91 -0.02 3.27 16 Total: -1.00 -80.91 378.24 6.18 -74.74 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: 0.96 Total: 21.10 kcal Atomic # 6 Polarization: -19.68 SS G_CDS: 6.02 Total: -13.66 kcal Atomic # 7 Polarization: -95.00 SS G_CDS: -2.78 Total: -97.78 kcal Atomic # 8 Polarization: -31.34 SS G_CDS: -0.05 Total: -31.39 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -80.91 6.18 -74.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318118599.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.508 kcal (2) G-P(sol) polarization free energy of solvation -80.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.739 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds