Wall clock time and date at job start Tue Mar 31 2020 11:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.47340 * 2 1 4 4 F 1.39902 * 109.46566 * 239.99710 * 2 1 3 5 5 C 1.52994 * 109.46980 * 120.00341 * 2 1 3 6 6 C 1.53003 * 109.47362 * 59.99672 * 5 2 1 7 7 N 1.46500 * 109.46840 * 180.02562 * 6 5 2 8 8 C 1.34779 * 119.99404 * 179.97438 * 7 6 5 9 9 O 1.21345 * 120.00368 * 0.02562 * 8 7 6 10 10 C 1.49458 * 119.99893 * 179.97438 * 8 7 6 11 11 O 1.21351 * 119.99459 * 6.39839 * 10 8 7 12 12 N 1.34775 * 120.00201 * 186.39682 * 10 8 7 13 13 C 1.46922 * 120.62923 * 7.07887 * 12 10 8 14 14 C 1.53194 * 108.77757 * 233.58662 * 13 12 10 15 15 C 1.53041 * 109.30841 * 305.36564 * 14 13 12 16 16 C 1.53039 * 109.54001 * 61.36888 * 15 14 13 17 17 H 1.08997 * 109.49943 * 58.57939 * 16 15 14 18 18 C 1.50694 * 109.50089 * 178.67992 * 16 15 14 19 19 H 1.08000 * 119.99796 * 34.61571 * 18 16 15 20 20 C 1.37875 * 120.00417 * 214.61315 * 18 16 15 21 21 N 1.31513 * 120.00377 * 175.10894 * 20 18 16 22 22 Si 1.86807 * 119.99525 * 355.11438 * 20 18 16 23 23 H 1.48493 * 109.47151 * 95.26163 * 22 20 18 24 24 H 1.48510 * 109.46531 * 215.25875 * 22 20 18 25 25 H 1.48493 * 109.47172 * 335.25483 * 22 20 18 26 26 C 1.46923 * 120.62935 * 186.80257 * 12 10 8 27 27 H 1.09000 * 109.46816 * 300.00445 * 1 2 3 28 28 H 1.09008 * 109.46697 * 59.99741 * 1 2 3 29 29 H 1.08992 * 109.47398 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47014 * 179.97438 * 3 2 1 31 31 H 1.09005 * 109.46734 * 299.99975 * 3 2 1 32 32 H 1.08998 * 109.46811 * 59.99850 * 3 2 1 33 33 H 1.09000 * 109.47177 * 299.99524 * 5 2 1 34 34 H 1.08999 * 109.47158 * 179.97438 * 5 2 1 35 35 H 1.09004 * 109.46825 * 299.99689 * 6 5 2 36 36 H 1.09000 * 109.47096 * 59.99802 * 6 5 2 37 37 H 0.96992 * 120.00498 * 0.02562 * 7 6 5 38 38 H 1.09006 * 109.58955 * 353.37842 * 13 12 10 39 39 H 1.09003 * 109.58861 * 113.65386 * 13 12 10 40 40 H 1.09004 * 109.49681 * 65.31868 * 14 13 12 41 41 H 1.08998 * 109.49772 * 185.41966 * 14 13 12 42 42 H 1.09005 * 109.45334 * 181.38332 * 15 14 13 43 43 H 1.09000 * 109.46375 * 301.35761 * 15 14 13 44 44 H 0.96997 * 119.99796 * 180.02562 * 21 20 18 45 45 H 1.09003 * 109.58631 * 246.19946 * 26 12 10 46 46 H 1.09001 * 109.58917 * 6.62424 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 9 1.9963 -0.6596 -1.1423 5 6 2.0400 -0.7213 1.2492 6 6 1.5299 -2.1638 1.2492 7 7 2.0178 -2.8542 2.4456 8 6 1.6916 -4.1444 2.6592 9 8 0.9943 -4.7342 1.8602 10 6 2.1897 -4.8490 3.8795 11 8 2.7892 -4.2309 4.7347 12 7 1.9731 -6.1707 4.0302 13 6 1.3882 -6.9624 2.9395 14 6 0.1648 -7.7125 3.4759 15 6 0.5722 -8.5344 4.7008 16 6 1.0842 -7.5985 5.7981 17 1 0.3045 -6.8829 6.0589 18 6 1.4546 -8.4057 7.0155 19 1 1.8761 -9.3935 6.9007 20 6 1.2555 -7.8835 8.2758 21 7 1.4880 -8.6228 9.3383 22 14 0.6552 -6.1256 8.4742 23 1 -0.8213 -6.1215 8.6316 24 1 1.2829 -5.5210 9.6767 25 1 1.0272 -5.3369 7.2722 26 6 2.3231 -6.8482 5.2860 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6768 1.9563 0.8900 33 1 1.6767 -0.2075 2.1392 34 1 3.1300 -0.7217 1.2490 35 1 0.4399 -2.1637 1.2492 36 1 1.8932 -2.6776 0.3592 37 1 2.5749 -2.3827 3.0845 38 1 1.0842 -6.2998 2.1291 39 1 2.1245 -7.6765 2.5707 40 1 -0.6062 -6.9957 3.7586 41 1 -0.2215 -8.3776 2.7036 42 1 -0.2911 -9.0884 5.0698 43 1 1.3608 -9.2337 4.4231 44 1 1.3475 -8.2554 10.2250 45 1 3.1333 -7.5549 5.1064 46 1 2.6362 -6.1101 6.0245 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328245577.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:15 Heat of formation + Delta-G solvation = -121.535013 kcal Electronic energy + Delta-G solvation = -26925.958102 eV Core-core repulsion = 22958.029145 eV Total energy + Delta-G solvation = -3967.928958 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -48.06566 -40.73787 -38.64027 -37.14861 -36.65457 -34.45808 -33.21047 -31.85594 -30.45991 -29.94631 -28.03055 -26.25273 -25.16326 -24.16406 -22.20769 -21.82266 -20.91583 -20.10887 -18.92964 -17.56067 -17.03087 -16.72338 -16.47502 -16.16301 -15.78986 -15.66881 -15.27914 -14.87066 -14.62592 -14.33146 -13.97924 -13.74272 -13.49999 -13.42473 -13.16040 -12.84845 -12.77583 -12.54910 -12.48361 -12.47644 -12.32720 -12.18296 -11.86906 -11.68669 -11.19621 -11.14204 -11.08449 -10.72634 -10.63798 -10.41635 -10.09023 -9.72999 -9.53075 -9.42644 -9.21478 -8.70478 -8.63758 -8.12656 -6.13844 -4.14348 1.56028 2.44766 3.28068 3.38194 3.39269 3.46455 3.65362 3.98656 4.08737 4.14390 4.24256 4.39879 4.48168 4.65206 4.71631 5.00957 5.04590 5.15139 5.17523 5.26214 5.39686 5.42897 5.51377 5.53497 5.55170 5.70112 5.73098 5.74657 5.89313 6.04754 6.21646 6.24415 6.44690 6.51483 6.57370 6.64605 6.80435 6.85977 7.02529 7.25658 7.33836 7.65387 7.72994 7.86625 8.24544 8.46769 8.91885 9.49390 10.98595 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.022344 B = 0.002959 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.845408 B = 9459.940369 C =10138.635103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.120 3.880 3 C -0.173 4.173 4 F -0.208 7.208 5 C -0.155 4.155 6 C 0.113 3.887 7 N -0.703 5.703 8 C 0.512 3.488 9 O -0.509 6.509 10 C 0.495 3.505 11 O -0.533 6.533 12 N -0.568 5.568 13 C 0.050 3.950 14 C -0.131 4.131 15 C -0.107 4.107 16 C 0.008 3.992 17 H 0.035 0.965 18 C -0.513 4.513 19 H 0.076 0.924 20 C 0.075 3.925 21 N -0.894 5.894 22 Si 0.870 3.130 23 H -0.279 1.279 24 H -0.286 1.286 25 H -0.257 1.257 26 C 0.107 3.893 27 H 0.077 0.923 28 H 0.069 0.931 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.413 0.587 38 H 0.146 0.854 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.064 0.936 42 H 0.059 0.941 43 H 0.053 0.947 44 H 0.265 0.735 45 H 0.067 0.933 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.765 18.076 -19.394 26.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.101 3.899 3 C -0.230 4.230 4 F -0.188 7.188 5 C -0.193 4.193 6 C -0.010 4.010 7 N -0.357 5.357 8 C 0.295 3.705 9 O -0.387 6.387 10 C 0.276 3.724 11 O -0.412 6.412 12 N -0.300 5.300 13 C -0.071 4.071 14 C -0.169 4.169 15 C -0.144 4.144 16 C -0.012 4.012 17 H 0.053 0.947 18 C -0.551 4.551 19 H 0.094 0.906 20 C -0.128 4.128 21 N -0.531 5.531 22 Si 0.697 3.303 23 H -0.205 1.205 24 H -0.213 1.213 25 H -0.181 1.181 26 C -0.014 4.014 27 H 0.096 0.904 28 H 0.088 0.912 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.110 0.890 34 H 0.104 0.896 35 H 0.096 0.904 36 H 0.097 0.903 37 H 0.249 0.751 38 H 0.162 0.838 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.078 0.922 43 H 0.072 0.928 44 H 0.075 0.925 45 H 0.085 0.915 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.929 17.937 -19.325 26.383 hybrid contribution 0.010 0.976 0.619 1.155 sum -0.919 18.913 -18.706 26.617 Atomic orbital electron populations 1.22489 0.93314 1.04141 1.03788 1.20815 0.94965 0.92106 0.81997 1.22375 1.02597 0.94303 1.03762 1.92878 1.90281 1.82816 1.52847 1.22421 1.02956 0.95397 0.98554 1.21514 1.00028 0.91432 0.87996 1.45791 1.52868 1.11654 1.25369 1.20614 0.80678 0.82509 0.86731 1.90321 1.37734 1.63496 1.47099 1.19849 0.81899 0.83734 0.86871 1.90732 1.41044 1.65835 1.43565 1.48461 1.58042 1.06258 1.17201 1.23146 0.95490 0.97117 0.91350 1.21913 0.97193 0.99071 0.98723 1.21602 1.00610 0.97983 0.94251 1.19552 0.92645 0.94408 0.94572 0.94717 1.20903 1.42934 1.02956 0.88282 0.90584 1.25082 0.94462 0.97306 0.95937 1.69902 1.48606 1.36446 0.98192 0.86947 0.79080 0.85857 0.78415 1.20456 1.21252 1.18120 1.22820 1.00398 0.95871 0.82299 0.90426 0.91156 0.90743 0.91211 0.91134 0.90477 0.89009 0.89636 0.90421 0.90268 0.75053 0.83786 0.92218 0.92335 0.91746 0.92201 0.92791 0.92524 0.91450 0.89833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.00 8.58 37.16 0.32 -0.68 16 2 C 0.12 0.77 1.37 -90.62 -0.12 0.65 16 3 C -0.17 -0.82 8.93 37.16 0.33 -0.49 16 4 F -0.21 -1.93 16.29 2.25 0.04 -1.89 16 5 C -0.16 -0.99 4.65 -26.73 -0.12 -1.11 16 6 C 0.11 1.03 5.20 -4.04 -0.02 1.01 16 7 N -0.70 -8.05 5.55 -60.72 -0.34 -8.39 16 8 C 0.51 7.75 7.78 -11.58 -0.09 7.66 16 9 O -0.51 -8.13 13.10 5.50 0.07 -8.05 16 10 C 0.50 9.11 7.74 -11.58 -0.09 9.02 16 11 O -0.53 -10.92 15.94 5.50 0.09 -10.84 16 12 N -0.57 -10.84 2.97 -173.00 -0.51 -11.35 16 13 C 0.05 0.82 6.27 -3.71 -0.02 0.80 16 14 C -0.13 -2.18 6.08 -26.61 -0.16 -2.34 16 15 C -0.11 -2.10 5.15 -26.69 -0.14 -2.24 16 16 C 0.01 0.18 1.79 -91.43 -0.16 0.02 16 17 H 0.03 0.85 5.61 -51.93 -0.29 0.56 16 18 C -0.51 -14.05 8.86 -34.44 -0.31 -14.36 16 19 H 0.08 2.24 8.06 -52.49 -0.42 1.82 16 20 C 0.07 2.14 5.47 -17.82 -0.10 2.05 16 21 N -0.89 -27.05 13.96 55.43 0.77 -26.28 16 22 Si 0.87 21.87 26.63 -169.99 -4.53 17.35 16 23 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 24 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 25 H -0.26 -6.43 5.97 56.52 0.34 -6.09 16 26 C 0.11 2.32 5.52 -3.49 -0.02 2.31 16 27 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.36 8.14 -51.92 -0.42 -0.06 16 29 H 0.07 0.47 6.43 -51.93 -0.33 0.14 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.08 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.08 0.71 6.43 -51.93 -0.33 0.37 16 36 H 0.08 0.80 7.80 -51.93 -0.41 0.40 16 37 H 0.41 4.27 7.96 -40.82 -0.32 3.95 16 38 H 0.15 2.32 3.78 -56.76 -0.21 2.10 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 43 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 44 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 45 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 46 H 0.08 2.00 5.94 -51.93 -0.31 1.69 16 LS Contribution 364.15 15.07 5.49 5.49 Total: -1.00 -32.32 364.15 -6.96 -39.27 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -7.33 Total: 2.42 kcal Atomic # 6 Polarization: 2.98 SS G_CDS: -0.71 Total: 2.28 kcal Atomic # 7 Polarization: -45.95 SS G_CDS: -0.08 Total: -46.02 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: 0.16 Total: -18.89 kcal Atomic # 9 Polarization: -1.93 SS G_CDS: 0.04 Total: -1.89 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.53 Total: 17.35 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.32 -6.96 -39.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328245577.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.262 kcal (2) G-P(sol) polarization free energy of solvation -32.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds