Wall clock time and date at job start Tue Mar 31 2020 11:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.47340 * 2 1 4 4 F 1.39902 * 109.46566 * 239.99710 * 2 1 3 5 5 C 1.52994 * 109.46980 * 120.00341 * 2 1 3 6 6 C 1.53003 * 109.47362 * 59.99672 * 5 2 1 7 7 N 1.46500 * 109.46840 * 180.02562 * 6 5 2 8 8 C 1.34779 * 119.99404 * 179.97438 * 7 6 5 9 9 O 1.21345 * 120.00368 * 0.02562 * 8 7 6 10 10 C 1.49458 * 119.99893 * 179.97438 * 8 7 6 11 11 O 1.21351 * 119.99459 * 6.39839 * 10 8 7 12 12 N 1.34775 * 120.00201 * 186.39682 * 10 8 7 13 13 C 1.46922 * 120.62923 * 7.07887 * 12 10 8 14 14 C 1.53194 * 108.77757 * 233.58662 * 13 12 10 15 15 C 1.53041 * 109.30841 * 305.36564 * 14 13 12 16 16 C 1.53039 * 109.54001 * 61.36888 * 15 14 13 17 17 H 1.08997 * 109.49943 * 58.57939 * 16 15 14 18 18 C 1.50694 * 109.50089 * 178.67992 * 16 15 14 19 19 H 1.08000 * 119.99796 * 34.61571 * 18 16 15 20 20 C 1.37875 * 120.00417 * 214.61315 * 18 16 15 21 21 N 1.31513 * 120.00377 * 175.10894 * 20 18 16 22 22 Si 1.86807 * 119.99525 * 355.11438 * 20 18 16 23 23 H 1.48493 * 109.47151 * 95.26163 * 22 20 18 24 24 H 1.48510 * 109.46531 * 215.25875 * 22 20 18 25 25 H 1.48493 * 109.47172 * 335.25483 * 22 20 18 26 26 C 1.46923 * 120.62935 * 186.80257 * 12 10 8 27 27 H 1.09000 * 109.46816 * 300.00445 * 1 2 3 28 28 H 1.09008 * 109.46697 * 59.99741 * 1 2 3 29 29 H 1.08992 * 109.47398 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47014 * 179.97438 * 3 2 1 31 31 H 1.09005 * 109.46734 * 299.99975 * 3 2 1 32 32 H 1.08998 * 109.46811 * 59.99850 * 3 2 1 33 33 H 1.09000 * 109.47177 * 299.99524 * 5 2 1 34 34 H 1.08999 * 109.47158 * 179.97438 * 5 2 1 35 35 H 1.09004 * 109.46825 * 299.99689 * 6 5 2 36 36 H 1.09000 * 109.47096 * 59.99802 * 6 5 2 37 37 H 0.96992 * 120.00498 * 0.02562 * 7 6 5 38 38 H 1.09006 * 109.58955 * 353.37842 * 13 12 10 39 39 H 1.09003 * 109.58861 * 113.65386 * 13 12 10 40 40 H 1.09004 * 109.49681 * 65.31868 * 14 13 12 41 41 H 1.08998 * 109.49772 * 185.41966 * 14 13 12 42 42 H 1.09005 * 109.45334 * 181.38332 * 15 14 13 43 43 H 1.09000 * 109.46375 * 301.35761 * 15 14 13 44 44 H 0.96997 * 119.99796 * 180.02562 * 21 20 18 45 45 H 1.09003 * 109.58631 * 246.19946 * 26 12 10 46 46 H 1.09001 * 109.58917 * 6.62424 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 9 1.9963 -0.6596 -1.1423 5 6 2.0400 -0.7213 1.2492 6 6 1.5299 -2.1638 1.2492 7 7 2.0178 -2.8542 2.4456 8 6 1.6916 -4.1444 2.6592 9 8 0.9943 -4.7342 1.8602 10 6 2.1897 -4.8490 3.8795 11 8 2.7892 -4.2309 4.7347 12 7 1.9731 -6.1707 4.0302 13 6 1.3882 -6.9624 2.9395 14 6 0.1648 -7.7125 3.4759 15 6 0.5722 -8.5344 4.7008 16 6 1.0842 -7.5985 5.7981 17 1 0.3045 -6.8829 6.0589 18 6 1.4546 -8.4057 7.0155 19 1 1.8761 -9.3935 6.9007 20 6 1.2555 -7.8835 8.2758 21 7 1.4880 -8.6228 9.3383 22 14 0.6552 -6.1256 8.4742 23 1 -0.8213 -6.1215 8.6316 24 1 1.2829 -5.5210 9.6767 25 1 1.0272 -5.3369 7.2722 26 6 2.3231 -6.8482 5.2860 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.1301 1.4424 0.0005 31 1 1.6768 1.9563 -0.8900 32 1 1.6768 1.9563 0.8900 33 1 1.6767 -0.2075 2.1392 34 1 3.1300 -0.7217 1.2490 35 1 0.4399 -2.1637 1.2492 36 1 1.8932 -2.6776 0.3592 37 1 2.5749 -2.3827 3.0845 38 1 1.0842 -6.2998 2.1291 39 1 2.1245 -7.6765 2.5707 40 1 -0.6062 -6.9957 3.7586 41 1 -0.2215 -8.3776 2.7036 42 1 -0.2911 -9.0884 5.0698 43 1 1.3608 -9.2337 4.4231 44 1 1.3475 -8.2554 10.2250 45 1 3.1333 -7.5549 5.1064 46 1 2.6362 -6.1101 6.0245 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328245577.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:14 Heat of formation + Delta-G solvation = -143.351200 kcal Electronic energy + Delta-G solvation = -26926.904123 eV Core-core repulsion = 22958.029145 eV Total energy + Delta-G solvation = -3968.874979 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.179 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -48.65616 -42.04925 -39.96386 -38.65145 -37.45190 -35.46408 -34.92839 -33.56718 -32.17956 -30.65961 -28.41531 -27.73556 -26.91418 -25.19714 -23.44458 -23.33353 -21.85846 -21.09092 -20.46056 -19.21013 -18.55976 -18.12826 -17.33832 -17.16439 -16.71787 -16.49328 -16.33419 -16.15515 -15.81751 -15.69727 -15.44704 -15.06691 -14.86087 -14.75521 -14.48738 -14.04675 -13.92880 -13.71784 -13.32259 -13.22484 -13.15026 -13.06014 -12.88698 -12.83223 -12.60205 -12.49249 -12.34120 -12.04458 -11.75176 -11.68389 -11.62431 -11.54886 -11.27013 -11.15697 -10.80510 -10.39920 -10.06030 -9.70159 -8.35523 -6.38497 0.25817 1.22899 1.27178 1.32894 1.44036 2.05504 2.28460 2.43993 3.01802 3.19547 3.48032 3.61418 3.69122 3.79050 4.04309 4.12191 4.14673 4.16171 4.22703 4.44415 4.47888 4.53249 4.64998 4.68071 4.73215 4.76665 4.81499 4.84106 4.89519 4.93348 4.97309 5.07487 5.19009 5.19959 5.26824 5.28894 5.29220 5.42984 5.54814 5.59554 5.64961 5.94295 6.24738 6.31371 6.64421 6.71770 6.86861 7.27864 8.80835 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.022344 B = 0.002959 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.845408 B = 9459.940369 C =10138.635103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.113 3.887 3 C -0.171 4.171 4 F -0.227 7.227 5 C -0.149 4.149 6 C 0.113 3.887 7 N -0.685 5.685 8 C 0.518 3.482 9 O -0.518 6.518 10 C 0.489 3.511 11 O -0.559 6.559 12 N -0.575 5.575 13 C 0.050 3.950 14 C -0.122 4.122 15 C -0.103 4.103 16 C 0.007 3.993 17 H 0.025 0.975 18 C -0.510 4.510 19 H 0.043 0.957 20 C 0.021 3.979 21 N -0.940 5.940 22 Si 0.932 3.068 23 H -0.268 1.268 24 H -0.285 1.285 25 H -0.257 1.257 26 C 0.117 3.883 27 H 0.093 0.907 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.111 0.889 34 H 0.089 0.911 35 H 0.082 0.918 36 H 0.070 0.930 37 H 0.420 0.580 38 H 0.157 0.843 39 H 0.074 0.926 40 H 0.053 0.947 41 H 0.099 0.901 42 H 0.054 0.946 43 H 0.056 0.944 44 H 0.267 0.733 45 H 0.068 0.932 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.560 20.315 -21.388 29.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.095 3.905 3 C -0.228 4.228 4 F -0.208 7.208 5 C -0.187 4.187 6 C -0.010 4.010 7 N -0.337 5.337 8 C 0.300 3.700 9 O -0.396 6.396 10 C 0.272 3.728 11 O -0.439 6.439 12 N -0.306 5.306 13 C -0.070 4.070 14 C -0.160 4.160 15 C -0.141 4.141 16 C -0.013 4.013 17 H 0.043 0.957 18 C -0.549 4.549 19 H 0.062 0.938 20 C -0.177 4.177 21 N -0.580 5.580 22 Si 0.757 3.243 23 H -0.194 1.194 24 H -0.211 1.211 25 H -0.181 1.181 26 C -0.005 4.005 27 H 0.112 0.888 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.112 0.888 33 H 0.130 0.870 34 H 0.108 0.892 35 H 0.100 0.900 36 H 0.088 0.912 37 H 0.258 0.742 38 H 0.173 0.827 39 H 0.093 0.907 40 H 0.072 0.928 41 H 0.117 0.883 42 H 0.073 0.927 43 H 0.075 0.925 44 H 0.076 0.924 45 H 0.087 0.913 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.727 20.205 -21.359 29.452 hybrid contribution 0.301 0.260 1.176 1.242 sum -1.426 20.466 -20.182 28.779 Atomic orbital electron populations 1.22509 0.92687 1.03807 1.04772 1.21049 0.95544 0.92830 0.81094 1.22374 1.02574 0.93164 1.04713 1.92844 1.90568 1.83346 1.54035 1.22420 1.03262 0.93571 0.99447 1.21686 1.00310 0.92689 0.86290 1.45766 1.51696 1.10324 1.25921 1.19918 0.81072 0.83531 0.85526 1.90301 1.38460 1.63959 1.46914 1.20456 0.81160 0.83405 0.87760 1.90712 1.42023 1.66310 1.44832 1.48446 1.58500 1.06969 1.16728 1.23357 0.95633 0.97401 0.90585 1.21864 0.97162 0.99019 0.97965 1.21514 1.00385 0.97660 0.94558 1.19505 0.93013 0.94503 0.94249 0.95691 1.21158 1.41582 1.02062 0.90087 0.93839 1.25818 0.95134 1.00958 0.95782 1.70022 1.50858 1.38337 0.98775 0.85966 0.78968 0.81277 0.78116 1.19379 1.21088 1.18114 1.22300 0.99430 0.95286 0.83480 0.88829 0.90889 0.91693 0.91292 0.90994 0.88780 0.87049 0.89190 0.89994 0.91161 0.74236 0.82653 0.90733 0.92823 0.88311 0.92730 0.92490 0.92376 0.91345 0.92281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.59 8.58 71.98 0.62 -0.97 16 2 C 0.11 1.20 1.37 -10.79 -0.01 1.18 16 3 C -0.17 -1.19 8.93 71.98 0.64 -0.55 16 4 F -0.23 -3.90 16.29 44.97 0.73 -3.17 16 5 C -0.15 -1.48 4.65 30.59 0.14 -1.34 16 6 C 0.11 1.78 5.20 86.38 0.45 2.23 16 7 N -0.68 -14.07 5.55 -464.39 -2.58 -16.64 16 8 C 0.52 14.58 7.78 87.27 0.68 15.26 16 9 O -0.52 -15.22 13.10 -3.23 -0.04 -15.27 16 10 C 0.49 17.34 7.74 87.27 0.68 18.02 16 11 O -0.56 -22.42 15.94 -3.25 -0.05 -22.48 16 12 N -0.58 -21.19 2.97 -819.62 -2.43 -23.62 16 13 C 0.05 1.52 6.27 86.36 0.54 2.06 16 14 C -0.12 -3.75 6.08 30.67 0.19 -3.56 16 15 C -0.10 -3.96 5.15 30.62 0.16 -3.81 16 16 C 0.01 0.33 1.79 -11.32 -0.02 0.31 16 17 H 0.02 1.20 5.61 -2.39 -0.01 1.19 16 18 C -0.51 -28.67 8.86 25.60 0.23 -28.45 16 19 H 0.04 2.67 8.06 -2.91 -0.02 2.64 16 20 C 0.02 1.25 5.47 84.65 0.46 1.71 16 21 N -0.94 -58.45 13.96 21.45 0.30 -58.15 16 22 Si 0.93 45.91 26.63 68.60 1.83 47.74 16 23 H -0.27 -12.69 7.11 99.48 0.71 -11.99 16 24 H -0.28 -13.86 7.11 99.48 0.71 -13.15 16 25 H -0.26 -12.55 5.97 99.48 0.59 -11.95 16 26 C 0.12 5.09 5.52 86.51 0.48 5.57 16 27 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.07 0.60 8.14 -2.38 -0.02 0.58 16 29 H 0.06 0.70 6.43 -2.39 -0.02 0.68 16 30 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.07 0.49 8.14 -2.38 -0.02 0.47 16 32 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 33 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.08 1.28 6.43 -2.39 -0.02 1.27 16 36 H 0.07 1.29 7.80 -2.39 -0.02 1.27 16 37 H 0.42 7.68 7.96 -92.71 -0.74 6.94 16 38 H 0.16 4.54 3.78 -78.91 -0.30 4.24 16 39 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 40 H 0.05 1.71 8.14 -2.39 -0.02 1.70 16 41 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 42 H 0.05 2.13 8.14 -2.38 -0.02 2.11 16 43 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 44 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 45 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 46 H 0.06 2.85 5.94 -2.39 -0.01 2.83 16 Total: -1.00 -70.86 364.15 2.83 -68.04 By element: Atomic # 1 Polarization: 16.03 SS G_CDS: -0.15 Total: 15.88 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: 5.22 Total: 7.66 kcal Atomic # 7 Polarization: -93.70 SS G_CDS: -4.71 Total: -98.41 kcal Atomic # 8 Polarization: -37.65 SS G_CDS: -0.09 Total: -37.74 kcal Atomic # 9 Polarization: -3.90 SS G_CDS: 0.73 Total: -3.17 kcal Atomic # 14 Polarization: 45.91 SS G_CDS: 1.83 Total: 47.74 kcal Total: -70.86 2.83 -68.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328245577.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.315 kcal (2) G-P(sol) polarization free energy of solvation -70.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds