Wall clock time and date at job start Tue Mar 31 2020 11:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47485 * 2 1 4 4 F 1.39900 * 109.46852 * 239.99842 * 2 1 3 5 5 C 1.52998 * 109.47121 * 119.99973 * 2 1 3 6 6 C 1.53006 * 109.46913 * 59.99856 * 5 2 1 7 7 N 1.46501 * 109.47082 * 180.02562 * 6 5 2 8 8 C 1.34774 * 120.00243 * 180.02562 * 7 6 5 9 9 O 1.21357 * 119.99737 * 359.97438 * 8 7 6 10 10 C 1.49450 * 120.00173 * 179.97438 * 8 7 6 11 11 O 1.21345 * 120.00237 * 353.32917 * 10 8 7 12 12 N 1.34779 * 119.99959 * 173.33642 * 10 8 7 13 13 C 1.46926 * 120.62965 * 173.06654 * 12 10 8 14 14 C 1.53192 * 108.89029 * 233.55576 * 13 12 10 15 15 C 1.53071 * 109.29669 * 305.57921 * 14 13 12 16 16 C 1.50702 * 109.44365 * 181.24072 * 15 14 13 17 17 H 1.08007 * 119.99829 * 239.79782 * 16 15 14 18 18 C 1.37879 * 120.00166 * 59.78883 * 16 15 14 19 19 N 1.31515 * 119.99785 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99970 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.46998 * 359.97438 * 20 18 16 22 22 H 1.48489 * 109.46978 * 120.00571 * 20 18 16 23 23 H 1.48503 * 109.46712 * 240.00375 * 20 18 16 24 24 C 1.53039 * 109.66157 * 61.15585 * 15 14 13 25 25 C 1.46927 * 120.62872 * 353.08530 * 12 10 8 26 26 H 1.08997 * 109.47150 * 300.00542 * 1 2 3 27 27 H 1.09001 * 109.46526 * 59.99841 * 1 2 3 28 28 H 1.08997 * 109.47328 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47418 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47316 * 300.00105 * 3 2 1 31 31 H 1.09005 * 109.47063 * 59.99596 * 3 2 1 32 32 H 1.09001 * 109.47337 * 300.00055 * 5 2 1 33 33 H 1.09003 * 109.47515 * 179.97438 * 5 2 1 34 34 H 1.08993 * 109.47263 * 59.99970 * 6 5 2 35 35 H 1.09003 * 109.47332 * 299.99584 * 6 5 2 36 36 H 0.96998 * 119.99852 * 359.97438 * 7 6 5 37 37 H 1.08995 * 109.58498 * 353.41300 * 13 12 10 38 38 H 1.09003 * 109.58798 * 113.70109 * 13 12 10 39 39 H 1.08998 * 109.49941 * 65.39130 * 14 13 12 40 40 H 1.09008 * 109.49729 * 185.48788 * 14 13 12 41 41 H 1.09009 * 109.34867 * 301.12720 * 15 14 13 42 42 H 0.97002 * 119.99706 * 179.97438 * 19 18 16 43 43 H 1.08999 * 109.49875 * 178.74934 * 24 15 14 44 44 H 1.09001 * 109.52161 * 58.66408 * 24 15 14 45 45 H 1.08997 * 109.58946 * 246.15605 * 25 12 10 46 46 H 1.08998 * 109.59100 * 6.44429 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 9 1.9963 -0.6595 -1.1423 5 6 2.0400 -0.7212 1.2492 6 6 1.5299 -2.1638 1.2492 7 7 2.0178 -2.8542 2.4457 8 6 1.6925 -4.1447 2.6588 9 8 0.9951 -4.7345 1.8598 10 6 2.1906 -4.8492 3.8791 11 8 2.9843 -4.3005 4.6150 12 7 1.7584 -6.0940 4.1621 13 6 2.3492 -6.8578 5.2695 14 6 2.8181 -8.2167 4.7402 15 6 1.6503 -8.9178 4.0417 16 6 2.0998 -10.2682 3.5462 17 1 2.0521 -10.5001 2.4924 18 6 2.5722 -11.2076 4.4381 19 7 2.6300 -10.9253 5.7213 20 14 3.1300 -12.8812 3.8238 21 1 2.9648 -12.9476 2.3495 22 1 4.5590 -13.0851 4.1721 23 1 2.3089 -13.9415 4.4617 24 6 1.1760 -8.0723 2.8575 25 6 0.6878 -6.7131 3.3689 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 3.1301 1.4424 0.0005 30 1 1.6768 1.9563 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6767 -0.2074 2.1392 33 1 3.1301 -0.7217 1.2491 34 1 1.8932 -2.6776 0.3593 35 1 0.4399 -2.1638 1.2493 36 1 2.5755 -2.3829 3.0841 37 1 3.1994 -6.3114 5.6775 38 1 1.6025 -7.0074 6.0495 39 1 3.6299 -8.0693 4.0280 40 1 3.1689 -8.8294 5.5707 41 1 0.8304 -9.0450 4.7487 42 1 2.9619 -11.5864 6.3488 43 1 0.3592 -8.5844 2.3488 44 1 2.0019 -7.9240 2.1619 45 1 -0.1950 -6.8531 3.9926 46 1 0.4402 -6.0702 2.5243 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330684558.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:09 Heat of formation + Delta-G solvation = -121.514452 kcal Electronic energy + Delta-G solvation = -26648.673785 eV Core-core repulsion = 22680.745719 eV Total energy + Delta-G solvation = -3967.928066 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.179 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -48.03320 -40.70456 -38.58784 -37.07536 -36.59515 -34.43926 -33.39262 -31.06452 -30.19744 -29.90302 -28.01524 -26.60077 -25.06953 -23.35217 -22.53675 -21.74274 -20.87244 -20.13694 -18.82226 -17.41636 -16.97437 -16.50320 -16.39733 -15.98470 -15.82463 -15.60300 -15.14642 -14.82702 -14.58621 -14.50845 -14.04093 -13.53087 -13.38182 -13.19038 -12.83766 -12.78862 -12.74942 -12.70012 -12.47092 -12.30516 -12.22606 -11.88825 -11.80432 -11.19851 -11.15073 -11.06116 -10.97419 -10.89209 -10.57616 -10.32449 -10.06682 -9.55205 -9.52090 -9.39263 -8.92770 -8.57255 -8.34009 -8.08379 -5.99904 -4.05938 1.57965 2.45911 3.29518 3.37789 3.39673 3.42172 3.67351 4.00805 4.10831 4.16552 4.26534 4.43713 4.51159 4.67488 4.73610 5.02059 5.06393 5.16596 5.27838 5.29645 5.42139 5.49691 5.54974 5.69725 5.72183 5.76548 5.89771 5.93991 6.04044 6.18634 6.35036 6.38792 6.61095 6.71920 6.83020 7.01521 7.04928 7.18810 7.33465 7.69536 7.75073 7.88233 7.95922 8.08508 8.23993 8.44046 8.97918 9.59013 11.05610 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.029219 B = 0.002450 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.036176 B =11427.710922 C =11855.938327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.120 3.880 3 C -0.173 4.173 4 F -0.207 7.207 5 C -0.154 4.154 6 C 0.113 3.887 7 N -0.704 5.704 8 C 0.511 3.489 9 O -0.504 6.504 10 C 0.499 3.501 11 O -0.542 6.542 12 N -0.559 5.559 13 C 0.105 3.895 14 C -0.122 4.122 15 C 0.044 3.956 16 C -0.510 4.510 17 H 0.056 0.944 18 C 0.060 3.940 19 N -0.892 5.892 20 Si 0.891 3.109 21 H -0.274 1.274 22 H -0.285 1.285 23 H -0.285 1.285 24 C -0.117 4.117 25 C 0.047 3.953 26 H 0.076 0.924 27 H 0.069 0.931 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.412 0.588 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.038 0.962 40 H 0.107 0.893 41 H 0.027 0.973 42 H 0.260 0.740 43 H 0.061 0.939 44 H 0.051 0.949 45 H 0.057 0.943 46 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.598 24.101 -7.450 25.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.101 3.899 3 C -0.230 4.230 4 F -0.188 7.188 5 C -0.193 4.193 6 C -0.010 4.010 7 N -0.358 5.358 8 C 0.294 3.706 9 O -0.380 6.380 10 C 0.280 3.720 11 O -0.422 6.422 12 N -0.290 5.290 13 C -0.016 4.016 14 C -0.160 4.160 15 C 0.026 3.974 16 C -0.548 4.548 17 H 0.074 0.926 18 C -0.141 4.141 19 N -0.531 5.531 20 Si 0.719 3.281 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.211 1.211 24 C -0.156 4.156 25 C -0.073 4.073 26 H 0.095 0.905 27 H 0.088 0.912 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.109 0.891 33 H 0.104 0.896 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.248 0.752 37 H 0.095 0.905 38 H 0.084 0.916 39 H 0.057 0.943 40 H 0.125 0.875 41 H 0.045 0.955 42 H 0.070 0.930 43 H 0.079 0.921 44 H 0.070 0.930 45 H 0.076 0.924 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -3.634 23.834 -7.495 25.247 hybrid contribution 0.661 -0.915 0.038 1.129 sum -2.973 22.919 -7.458 24.284 Atomic orbital electron populations 1.22486 0.93333 1.04154 1.03737 1.20813 0.94957 0.92088 0.82064 1.22372 1.02608 0.94327 1.03719 1.92885 1.90267 1.82801 1.52806 1.22416 1.02978 0.95387 0.98473 1.21513 0.99947 0.91388 0.88143 1.45766 1.53065 1.11467 1.25476 1.20515 0.80552 0.82342 0.87229 1.90373 1.36992 1.63776 1.46872 1.19802 0.83204 0.83157 0.85809 1.90701 1.35644 1.65856 1.49973 1.48222 1.35864 1.12863 1.32091 1.22088 0.98020 0.93975 0.87560 1.22042 0.99664 0.91863 1.02476 1.18703 0.93858 0.92793 0.92057 1.21253 1.42014 0.97769 0.93742 0.92611 1.24980 0.95723 0.98503 0.94908 1.69849 1.47207 1.34592 1.01479 0.86554 0.78284 0.84267 0.79007 1.19825 1.21085 1.21078 1.21914 1.00197 0.93500 0.99944 1.23308 0.87994 0.98329 0.97713 0.90472 0.91171 0.90710 0.91214 0.91147 0.90517 0.89084 0.89640 0.90251 0.90412 0.75168 0.90478 0.91645 0.94280 0.87544 0.95502 0.93049 0.92079 0.93033 0.92448 0.84156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.97 8.58 37.16 0.32 -0.65 16 2 C 0.12 0.77 1.37 -90.62 -0.12 0.64 16 3 C -0.17 -0.80 8.93 37.15 0.33 -0.47 16 4 F -0.21 -1.99 16.29 2.25 0.04 -1.95 16 5 C -0.15 -0.96 4.65 -26.73 -0.12 -1.08 16 6 C 0.11 1.03 5.20 -4.04 -0.02 1.01 16 7 N -0.70 -7.87 5.55 -60.73 -0.34 -8.21 16 8 C 0.51 7.72 7.78 -11.59 -0.09 7.63 16 9 O -0.50 -8.43 13.10 5.49 0.07 -8.35 16 10 C 0.50 8.79 7.74 -11.58 -0.09 8.70 16 11 O -0.54 -10.17 15.94 5.50 0.09 -10.08 16 12 N -0.56 -10.59 2.97 -173.27 -0.52 -11.10 16 13 C 0.10 2.10 6.41 -3.71 -0.02 2.08 16 14 C -0.12 -2.86 5.16 -26.60 -0.14 -3.00 16 15 C 0.04 1.09 2.06 -91.71 -0.19 0.90 16 16 C -0.51 -13.90 8.56 -34.44 -0.29 -14.20 16 17 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 18 C 0.06 1.64 5.30 -17.82 -0.09 1.54 16 19 N -0.89 -25.06 11.30 55.43 0.63 -24.43 16 20 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 21 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 C -0.12 -2.48 5.30 -26.61 -0.14 -2.62 16 25 C 0.05 0.87 6.27 -3.71 -0.02 0.85 16 26 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.47 6.43 -51.93 -0.33 0.13 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.08 0.85 7.80 -51.93 -0.41 0.45 16 35 H 0.08 0.69 6.43 -51.93 -0.33 0.35 16 36 H 0.41 4.01 7.96 -40.82 -0.33 3.69 16 37 H 0.08 1.52 7.05 -51.93 -0.37 1.15 16 38 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 40 H 0.11 2.75 6.03 -51.92 -0.31 2.44 16 41 H 0.03 0.71 8.14 -51.92 -0.42 0.29 16 42 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 43 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 44 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 45 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.14 2.51 3.78 -56.75 -0.21 2.29 16 LS Contribution 366.70 15.07 5.53 5.53 Total: -1.00 -30.75 366.70 -7.56 -38.30 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -7.33 Total: 2.72 kcal Atomic # 6 Polarization: 2.04 SS G_CDS: -0.70 Total: 1.33 kcal Atomic # 7 Polarization: -43.52 SS G_CDS: -0.23 Total: -43.74 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: 0.16 Total: -18.44 kcal Atomic # 9 Polarization: -1.99 SS G_CDS: 0.04 Total: -1.95 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.75 -7.56 -38.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330684558.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.213 kcal (2) G-P(sol) polarization free energy of solvation -30.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds