Wall clock time and date at job start Tue Mar 31 2020 11:03:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47485 * 2 1 4 4 F 1.39900 * 109.46852 * 239.99842 * 2 1 3 5 5 C 1.52998 * 109.47121 * 119.99973 * 2 1 3 6 6 C 1.53006 * 109.46913 * 59.99856 * 5 2 1 7 7 N 1.46501 * 109.47082 * 180.02562 * 6 5 2 8 8 C 1.34774 * 120.00243 * 180.02562 * 7 6 5 9 9 O 1.21357 * 119.99737 * 359.97438 * 8 7 6 10 10 C 1.49450 * 120.00173 * 179.97438 * 8 7 6 11 11 O 1.21345 * 120.00237 * 353.32917 * 10 8 7 12 12 N 1.34779 * 119.99959 * 173.33642 * 10 8 7 13 13 C 1.46926 * 120.62965 * 173.06654 * 12 10 8 14 14 C 1.53192 * 108.89029 * 233.55576 * 13 12 10 15 15 C 1.53071 * 109.29669 * 305.57921 * 14 13 12 16 16 C 1.50702 * 109.44365 * 181.24072 * 15 14 13 17 17 H 1.08007 * 119.99829 * 239.79782 * 16 15 14 18 18 C 1.37879 * 120.00166 * 59.78883 * 16 15 14 19 19 N 1.31515 * 119.99785 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99970 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.46998 * 359.97438 * 20 18 16 22 22 H 1.48489 * 109.46978 * 120.00571 * 20 18 16 23 23 H 1.48503 * 109.46712 * 240.00375 * 20 18 16 24 24 C 1.53039 * 109.66157 * 61.15585 * 15 14 13 25 25 C 1.46927 * 120.62872 * 353.08530 * 12 10 8 26 26 H 1.08997 * 109.47150 * 300.00542 * 1 2 3 27 27 H 1.09001 * 109.46526 * 59.99841 * 1 2 3 28 28 H 1.08997 * 109.47328 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47418 * 179.97438 * 3 2 1 30 30 H 1.08996 * 109.47316 * 300.00105 * 3 2 1 31 31 H 1.09005 * 109.47063 * 59.99596 * 3 2 1 32 32 H 1.09001 * 109.47337 * 300.00055 * 5 2 1 33 33 H 1.09003 * 109.47515 * 179.97438 * 5 2 1 34 34 H 1.08993 * 109.47263 * 59.99970 * 6 5 2 35 35 H 1.09003 * 109.47332 * 299.99584 * 6 5 2 36 36 H 0.96998 * 119.99852 * 359.97438 * 7 6 5 37 37 H 1.08995 * 109.58498 * 353.41300 * 13 12 10 38 38 H 1.09003 * 109.58798 * 113.70109 * 13 12 10 39 39 H 1.08998 * 109.49941 * 65.39130 * 14 13 12 40 40 H 1.09008 * 109.49729 * 185.48788 * 14 13 12 41 41 H 1.09009 * 109.34867 * 301.12720 * 15 14 13 42 42 H 0.97002 * 119.99706 * 179.97438 * 19 18 16 43 43 H 1.08999 * 109.49875 * 178.74934 * 24 15 14 44 44 H 1.09001 * 109.52161 * 58.66408 * 24 15 14 45 45 H 1.08997 * 109.58946 * 246.15605 * 25 12 10 46 46 H 1.08998 * 109.59100 * 6.44429 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 9 1.9963 -0.6595 -1.1423 5 6 2.0400 -0.7212 1.2492 6 6 1.5299 -2.1638 1.2492 7 7 2.0178 -2.8542 2.4457 8 6 1.6925 -4.1447 2.6588 9 8 0.9951 -4.7345 1.8598 10 6 2.1906 -4.8492 3.8791 11 8 2.9843 -4.3005 4.6150 12 7 1.7584 -6.0940 4.1621 13 6 2.3492 -6.8578 5.2695 14 6 2.8181 -8.2167 4.7402 15 6 1.6503 -8.9178 4.0417 16 6 2.0998 -10.2682 3.5462 17 1 2.0521 -10.5001 2.4924 18 6 2.5722 -11.2076 4.4381 19 7 2.6300 -10.9253 5.7213 20 14 3.1300 -12.8812 3.8238 21 1 2.9648 -12.9476 2.3495 22 1 4.5590 -13.0851 4.1721 23 1 2.3089 -13.9415 4.4617 24 6 1.1760 -8.0723 2.8575 25 6 0.6878 -6.7131 3.3689 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 3.1301 1.4424 0.0005 30 1 1.6768 1.9563 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6767 -0.2074 2.1392 33 1 3.1301 -0.7217 1.2491 34 1 1.8932 -2.6776 0.3593 35 1 0.4399 -2.1638 1.2493 36 1 2.5755 -2.3829 3.0841 37 1 3.1994 -6.3114 5.6775 38 1 1.6025 -7.0074 6.0495 39 1 3.6299 -8.0693 4.0280 40 1 3.1689 -8.8294 5.5707 41 1 0.8304 -9.0450 4.7487 42 1 2.9619 -11.5864 6.3488 43 1 0.3592 -8.5844 2.3488 44 1 2.0019 -7.9240 2.1619 45 1 -0.1950 -6.8531 3.9926 46 1 0.4402 -6.0702 2.5243 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330684558.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:08 Heat of formation + Delta-G solvation = -140.688145 kcal Electronic energy + Delta-G solvation = -26649.505219 eV Core-core repulsion = 22680.745719 eV Total energy + Delta-G solvation = -3968.759500 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 314.179 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -48.64276 -42.02845 -39.92221 -38.61924 -37.43026 -35.56724 -34.93715 -32.94411 -31.87100 -30.63256 -28.40090 -28.31969 -26.40846 -24.65439 -24.12645 -23.12281 -21.88182 -21.11506 -20.39538 -18.74816 -18.52179 -18.05567 -17.29054 -17.07637 -16.74626 -16.52537 -16.35286 -16.12318 -15.92426 -15.56874 -15.34015 -14.86495 -14.77435 -14.56359 -14.44527 -13.92211 -13.85649 -13.51838 -13.27351 -13.15959 -13.08978 -12.86751 -12.85049 -12.81214 -12.55443 -12.47523 -12.35727 -12.12924 -11.94232 -11.67349 -11.54991 -11.46216 -11.22474 -10.87156 -10.46139 -10.37701 -10.02108 -9.69884 -8.09042 -6.22734 0.27699 1.25569 1.39364 1.41972 1.52759 2.07238 2.42667 2.44986 3.17027 3.20987 3.50333 3.63855 3.71637 3.81486 4.12906 4.14170 4.18212 4.30339 4.34689 4.43533 4.50561 4.59393 4.67279 4.70296 4.77354 4.79183 4.83895 4.91602 4.94580 4.98042 5.11330 5.18888 5.21522 5.29531 5.31161 5.35343 5.42021 5.44507 5.62203 5.95231 5.97461 6.08484 6.29518 6.37499 6.67440 6.87326 6.89118 7.45101 8.94675 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.029219 B = 0.002450 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.036176 B =11427.710922 C =11855.938327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.111 3.889 3 C -0.170 4.170 4 F -0.229 7.229 5 C -0.147 4.147 6 C 0.111 3.889 7 N -0.682 5.682 8 C 0.515 3.485 9 O -0.522 6.522 10 C 0.499 3.501 11 O -0.553 6.553 12 N -0.569 5.569 13 C 0.116 3.884 14 C -0.112 4.112 15 C 0.042 3.958 16 C -0.532 4.532 17 H 0.049 0.951 18 C 0.013 3.987 19 N -0.914 5.914 20 Si 0.952 3.048 21 H -0.270 1.270 22 H -0.281 1.281 23 H -0.279 1.279 24 C -0.110 4.110 25 C 0.057 3.943 26 H 0.096 0.904 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.096 0.904 32 H 0.116 0.884 33 H 0.088 0.912 34 H 0.062 0.938 35 H 0.085 0.915 36 H 0.422 0.578 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.024 0.976 40 H 0.080 0.920 41 H 0.004 0.996 42 H 0.261 0.739 43 H 0.066 0.934 44 H 0.040 0.960 45 H 0.067 0.933 46 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.933 25.974 -7.820 27.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.092 3.908 3 C -0.228 4.228 4 F -0.210 7.210 5 C -0.185 4.185 6 C -0.011 4.011 7 N -0.335 5.335 8 C 0.296 3.704 9 O -0.401 6.401 10 C 0.281 3.719 11 O -0.432 6.432 12 N -0.300 5.300 13 C -0.006 4.006 14 C -0.150 4.150 15 C 0.023 3.977 16 C -0.570 4.570 17 H 0.068 0.932 18 C -0.185 4.185 19 N -0.554 5.554 20 Si 0.778 3.222 21 H -0.195 1.195 22 H -0.207 1.207 23 H -0.205 1.205 24 C -0.148 4.148 25 C -0.063 4.063 26 H 0.115 0.885 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.115 0.885 32 H 0.135 0.865 33 H 0.106 0.894 34 H 0.080 0.920 35 H 0.103 0.897 36 H 0.260 0.740 37 H 0.100 0.900 38 H 0.089 0.911 39 H 0.043 0.957 40 H 0.098 0.902 41 H 0.022 0.978 42 H 0.071 0.929 43 H 0.085 0.915 44 H 0.059 0.941 45 H 0.086 0.914 46 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -3.959 25.758 -7.872 27.224 hybrid contribution 0.787 -1.431 0.142 1.639 sum -3.172 24.327 -7.730 25.722 Atomic orbital electron populations 1.22505 0.92588 1.03769 1.04851 1.21098 0.95652 0.92891 0.81123 1.22369 1.02514 0.93093 1.04776 1.92845 1.90599 1.83410 1.54193 1.22414 1.03166 0.93389 0.99533 1.21678 1.00412 0.92732 0.86271 1.45713 1.51806 1.09996 1.25957 1.20007 0.80848 0.83408 0.86148 1.90341 1.38215 1.64396 1.47105 1.20246 0.82576 0.82693 0.86341 1.90690 1.35932 1.66062 1.50550 1.48207 1.36284 1.13532 1.32005 1.21798 0.98422 0.92350 0.88026 1.21794 0.98787 0.93467 1.00985 1.18674 0.93379 0.92751 0.92857 1.21586 1.42464 0.99393 0.93585 0.93239 1.25707 0.95831 1.01852 0.95129 1.69967 1.47555 1.35589 1.02290 0.85597 0.77839 0.80202 0.78556 1.19480 1.20734 1.20508 1.21782 0.99947 0.94705 0.98349 1.23287 0.87934 0.96805 0.98317 0.88478 0.91039 0.91801 0.91397 0.91118 0.88495 0.86517 0.89373 0.91955 0.89705 0.74044 0.90026 0.91108 0.95739 0.90167 0.97776 0.92938 0.91507 0.94121 0.91444 0.82805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.57 8.58 71.98 0.62 -0.95 16 2 C 0.11 1.20 1.37 -10.80 -0.01 1.18 16 3 C -0.17 -1.16 8.93 71.98 0.64 -0.52 16 4 F -0.23 -4.23 16.29 44.97 0.73 -3.50 16 5 C -0.15 -1.43 4.65 30.60 0.14 -1.29 16 6 C 0.11 1.81 5.20 86.38 0.45 2.26 16 7 N -0.68 -13.76 5.55 -464.40 -2.58 -16.34 16 8 C 0.51 14.70 7.78 87.27 0.68 15.38 16 9 O -0.52 -16.72 13.10 -3.27 -0.04 -16.76 16 10 C 0.50 16.93 7.74 87.27 0.68 17.61 16 11 O -0.55 -19.90 15.94 -3.23 -0.05 -19.95 16 12 N -0.57 -21.13 2.97 -820.48 -2.44 -23.57 16 13 C 0.12 4.66 6.41 86.36 0.55 5.21 16 14 C -0.11 -5.37 5.16 30.68 0.16 -5.21 16 15 C 0.04 2.11 2.06 -11.50 -0.02 2.08 16 16 C -0.53 -29.58 8.56 25.60 0.22 -29.36 16 17 H 0.05 2.74 7.74 -2.91 -0.02 2.72 16 18 C 0.01 0.74 5.30 84.66 0.45 1.19 16 19 N -0.91 -52.23 11.30 21.45 0.24 -51.99 16 20 Si 0.95 43.97 29.54 68.60 2.03 46.00 16 21 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 22 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 23 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 24 C -0.11 -4.65 5.30 30.67 0.16 -4.49 16 25 C 0.06 2.06 6.27 86.37 0.54 2.60 16 26 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 27 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.06 0.70 6.43 -2.39 -0.02 0.68 16 29 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.10 0.27 8.14 -2.38 -0.02 0.25 16 32 H 0.12 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.06 1.28 7.80 -2.39 -0.02 1.26 16 35 H 0.08 1.32 6.43 -2.39 -0.02 1.31 16 36 H 0.42 7.09 7.96 -92.71 -0.74 6.35 16 37 H 0.08 3.20 7.05 -2.39 -0.02 3.18 16 38 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 39 H 0.02 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.08 4.28 6.03 -2.38 -0.01 4.27 16 41 H 0.00 0.22 8.14 -2.38 -0.02 0.20 16 42 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 43 H 0.07 2.72 8.14 -2.39 -0.02 2.70 16 44 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 45 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 46 H 0.16 5.30 3.78 -78.70 -0.30 5.00 16 Total: -1.00 -66.35 366.70 3.10 -63.25 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: -0.04 Total: 17.15 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: 5.25 Total: 5.70 kcal Atomic # 7 Polarization: -87.12 SS G_CDS: -4.77 Total: -91.89 kcal Atomic # 8 Polarization: -36.62 SS G_CDS: -0.09 Total: -36.71 kcal Atomic # 9 Polarization: -4.23 SS G_CDS: 0.73 Total: -3.50 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 46.00 kcal Total: -66.35 3.10 -63.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330684558.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.441 kcal (2) G-P(sol) polarization free energy of solvation -66.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds