Wall clock time and date at job start Tue Mar 31 2020 10:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47194 * 1 3 3 C 1.17403 * 179.97438 * 2 1 4 4 C 1.47204 * 179.97438 * 180.89717 * 3 2 1 5 5 C 1.52997 * 109.47000 * 238.70197 * 4 3 2 6 6 H 1.08994 * 109.47401 * 54.99718 * 5 4 3 7 7 N 1.46908 * 109.46955 * 294.99668 * 5 4 3 8 8 C 1.50707 * 109.47065 * 175.00133 * 5 4 3 9 9 O 1.21284 * 119.99995 * 99.99702 * 8 5 4 10 10 N 1.34775 * 119.99766 * 279.99678 * 8 5 4 11 11 C 1.46497 * 120.00290 * 179.97438 * 10 8 5 12 12 H 1.09002 * 109.47031 * 34.99871 * 11 10 8 13 13 C 1.52992 * 109.47408 * 154.99725 * 11 10 8 14 14 C 1.52997 * 109.47482 * 295.00294 * 13 11 10 15 15 C 1.50701 * 109.47212 * 179.97438 * 14 13 11 16 16 H 1.07998 * 120.00129 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99861 * 179.97438 * 15 14 13 18 18 N 1.31510 * 119.99913 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99734 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47432 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46890 * 120.00210 * 19 17 15 22 22 H 1.48501 * 109.47062 * 240.00257 * 19 17 15 23 23 C 1.50699 * 109.47154 * 275.00360 * 11 10 8 24 24 C 1.38236 * 119.99912 * 319.72339 * 23 11 10 25 25 C 1.38240 * 120.00151 * 179.81152 * 24 23 11 26 26 C 1.38231 * 119.99531 * 0.39579 * 25 24 23 27 27 C 1.38233 * 120.00345 * 359.85881 * 26 25 24 28 28 C 1.38232 * 120.00107 * 359.95306 * 27 26 25 29 29 H 1.08999 * 109.47039 * 120.40293 * 1 2 3 30 30 H 1.08995 * 109.47381 * 240.40278 * 1 2 3 31 31 H 1.09009 * 109.46968 * 0.40418 * 1 2 3 32 32 H 1.09004 * 109.47202 * 118.69840 * 4 3 2 33 33 H 1.09000 * 109.47243 * 358.69755 * 4 3 2 34 34 H 1.00899 * 111.00106 * 300.00267 * 7 5 4 35 35 H 1.00901 * 110.99727 * 63.95740 * 7 5 4 36 36 H 0.97003 * 119.99861 * 0.02562 * 10 8 5 37 37 H 1.09002 * 109.47103 * 175.00047 * 13 11 10 38 38 H 1.08998 * 109.46862 * 55.00859 * 13 11 10 39 39 H 1.09002 * 109.47153 * 59.99783 * 14 13 11 40 40 H 1.09001 * 109.46832 * 299.99974 * 14 13 11 41 41 H 0.97002 * 119.99768 * 179.97438 * 18 17 15 42 42 H 1.08006 * 119.99710 * 359.97438 * 24 23 11 43 43 H 1.07995 * 120.00176 * 180.22759 * 25 24 23 44 44 H 1.08006 * 119.99475 * 179.83643 * 26 25 24 45 45 H 1.08003 * 120.00170 * 179.97438 * 27 26 25 46 46 H 1.07994 * 120.00242 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4719 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0018 0.0000 5 6 4.6273 0.7517 1.2326 6 1 4.1930 0.3121 2.1305 7 7 4.2374 2.1651 1.1416 8 6 6.1293 0.6482 1.2985 9 8 6.8181 1.5707 0.9170 10 7 6.7072 -0.4696 1.7813 11 6 8.1673 -0.5705 1.8449 12 1 8.5894 0.4075 2.0760 13 6 8.5626 -1.5673 2.9362 14 6 8.1346 -1.0253 4.3014 15 6 8.5235 -2.0074 5.3762 16 1 9.0260 -2.9261 5.1121 17 6 8.2385 -1.7326 6.6970 18 7 7.6270 -0.6137 7.0187 19 14 8.7212 -2.9497 8.0293 20 1 9.3926 -4.1208 7.4104 21 1 9.6504 -2.2949 8.9848 22 1 7.5048 -3.4007 8.7519 23 6 8.6964 -1.0446 0.5158 24 6 8.0258 -2.0309 -0.1830 25 6 8.5090 -2.4631 -1.4040 26 6 9.6672 -1.9147 -1.9222 27 6 10.3407 -0.9321 -1.2209 28 6 9.8554 -0.4972 -0.0018 29 1 -0.3633 -0.5201 -0.8863 30 1 -0.3634 -0.5075 0.8935 31 1 -0.3633 1.0277 -0.0072 32 1 4.4809 0.4957 -0.9014 33 1 4.4823 -1.0252 0.0234 34 1 4.6279 2.5956 0.3168 35 1 3.2336 2.2653 1.1610 36 1 6.1563 -1.2075 2.0861 37 1 9.6433 -1.7094 2.9242 38 1 8.0687 -2.5215 2.7529 39 1 7.0540 -0.8831 4.3133 40 1 8.6286 -0.0711 4.4846 41 1 7.4262 -0.4206 7.9478 42 1 7.1229 -2.4620 0.2237 43 1 7.9831 -3.2310 -1.9517 44 1 10.0462 -2.2542 -2.8749 45 1 11.2459 -0.5039 -1.6256 46 1 10.3814 0.2707 0.5459 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574963704.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:18 Heat of formation + Delta-G solvation = 14.740043 kcal Electronic energy + Delta-G solvation = -25472.070731 eV Core-core repulsion = 21940.820328 eV Total energy + Delta-G solvation = -3531.250403 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.08233 -38.82570 -36.36325 -35.51729 -33.64924 -33.17480 -31.57194 -30.71109 -30.34928 -30.12016 -27.57202 -26.44496 -24.28427 -23.38574 -22.42317 -21.12564 -20.09258 -19.91422 -17.78818 -16.93960 -16.63546 -16.36646 -15.78185 -15.24701 -15.10673 -14.78891 -14.57431 -14.47133 -14.23199 -14.02715 -13.79419 -13.60451 -13.46464 -13.22933 -13.13068 -12.95118 -12.74426 -12.52011 -12.10738 -11.90663 -11.72102 -11.14160 -10.98126 -10.95328 -10.65388 -10.53014 -10.20041 -9.99486 -9.95160 -9.60026 -9.53844 -9.14604 -8.78752 -8.75058 -8.70547 -8.44344 -8.36492 -6.01243 -4.04579 1.51117 1.55762 2.37580 2.49092 2.93153 3.29609 3.36731 3.37680 3.41131 3.95179 4.03248 4.44286 4.58591 4.85033 4.88734 5.00435 5.02514 5.04973 5.12472 5.24728 5.26659 5.28558 5.34407 5.39379 5.42967 5.60157 5.62895 5.64564 5.68780 5.77884 5.89290 6.11000 6.17595 6.35461 6.54634 6.61557 6.64515 6.74429 6.93297 6.96968 7.00323 7.15892 7.37995 7.41893 7.65285 7.76037 7.82208 7.97790 8.38462 8.51990 9.02803 9.59923 11.09478 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.007498 B = 0.004272 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3733.421760 B = 6552.762035 C = 9162.989034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 C -0.185 4.185 3 C -0.189 4.189 4 C -0.035 4.035 5 C 0.082 3.918 6 H 0.108 0.892 7 N -0.822 5.822 8 C 0.525 3.475 9 O -0.530 6.530 10 N -0.710 5.710 11 C 0.182 3.818 12 H 0.094 0.906 13 C -0.112 4.112 14 C 0.024 3.976 15 C -0.523 4.523 16 H 0.055 0.945 17 C 0.058 3.942 18 N -0.891 5.891 19 Si 0.890 3.110 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.077 4.077 24 C -0.109 4.109 25 C -0.124 4.124 26 C -0.131 4.131 27 C -0.121 4.121 28 C -0.106 4.106 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.350 0.650 35 H 0.346 0.654 36 H 0.401 0.599 37 H 0.066 0.934 38 H 0.056 0.944 39 H 0.019 0.981 40 H 0.016 0.984 41 H 0.260 0.740 42 H 0.117 0.883 43 H 0.116 0.884 44 H 0.115 0.885 45 H 0.118 0.882 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.012 -1.033 -18.397 20.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.185 4.185 3 C -0.189 4.189 4 C -0.074 4.074 5 C -0.034 4.034 6 H 0.126 0.874 7 N -0.353 5.353 8 C 0.309 3.691 9 O -0.405 6.405 10 N -0.361 5.361 11 C 0.078 3.922 12 H 0.112 0.888 13 C -0.150 4.150 14 C -0.013 4.013 15 C -0.561 4.561 16 H 0.073 0.927 17 C -0.143 4.143 18 N -0.530 5.530 19 Si 0.718 3.282 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.211 1.211 23 C -0.079 4.079 24 C -0.127 4.127 25 C -0.142 4.142 26 C -0.149 4.149 27 C -0.139 4.139 28 C -0.125 4.125 29 H 0.097 0.903 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.108 0.892 33 H 0.113 0.887 34 H 0.164 0.836 35 H 0.160 0.840 36 H 0.236 0.764 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.038 0.962 40 H 0.035 0.965 41 H 0.070 0.930 42 H 0.135 0.865 43 H 0.134 0.866 44 H 0.134 0.866 45 H 0.136 0.864 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.174 -0.152 -17.811 19.203 hybrid contribution -0.512 -1.358 0.107 1.456 sum -7.687 -1.510 -17.704 19.360 Atomic orbital electron populations 1.18872 0.84581 1.03102 1.03107 1.22406 0.93865 1.01251 1.00952 1.22057 0.93242 1.01757 1.01875 1.19422 0.85212 1.02971 0.99767 1.21368 0.93126 0.90506 0.98408 0.87446 1.58475 1.15945 1.12105 1.48783 1.20169 0.89340 0.82313 0.77238 1.90670 1.64514 1.37759 1.47571 1.45971 1.07622 1.18198 1.64260 1.20121 0.79321 1.01464 0.91320 0.88766 1.21975 1.01199 0.96533 0.95308 1.19100 0.96915 0.96359 0.88927 1.21257 1.38279 1.05008 0.91561 0.92658 1.25016 0.95223 0.95314 0.98791 1.69982 1.41378 1.23764 1.17926 0.86575 0.78232 0.81397 0.82021 1.19762 1.21024 1.21057 1.20414 0.95178 0.95691 0.96572 1.20907 0.99928 0.96957 0.94907 1.21065 0.96771 1.00185 0.96202 1.21054 0.96140 0.97786 0.99899 1.21083 0.99875 0.97657 0.95272 1.21048 0.96095 0.99627 0.95701 0.90259 0.90018 0.90128 0.89165 0.88655 0.83586 0.84044 0.76433 0.91510 0.92568 0.96242 0.96518 0.93036 0.86491 0.86568 0.86649 0.86382 0.85980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.27 10.32 34.37 0.35 0.09 16 2 C -0.18 -1.90 14.13 -37.13 -0.52 -2.43 16 3 C -0.19 -2.10 12.51 -37.12 -0.46 -2.56 16 4 C -0.03 -0.37 5.34 -29.52 -0.16 -0.52 16 5 C 0.08 1.04 3.18 -68.86 -0.22 0.82 16 6 H 0.11 1.37 8.14 -51.93 -0.42 0.95 16 7 N -0.82 -10.56 8.94 -5.65 -0.05 -10.61 16 8 C 0.52 8.35 7.04 -10.98 -0.08 8.27 16 9 O -0.53 -10.23 15.91 5.55 0.09 -10.14 16 10 N -0.71 -10.86 3.78 -54.93 -0.21 -11.07 16 11 C 0.18 3.09 2.17 -69.09 -0.15 2.94 16 12 H 0.09 1.82 7.44 -51.93 -0.39 1.43 16 13 C -0.11 -2.15 4.67 -26.74 -0.12 -2.28 16 14 C 0.02 0.59 4.86 -27.88 -0.14 0.46 16 15 C -0.52 -14.34 9.11 -34.44 -0.31 -14.66 16 16 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.89 -26.53 13.29 55.43 0.74 -25.79 16 19 Si 0.89 21.38 29.54 -169.99 -5.02 16.36 16 20 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 C -0.08 -1.18 4.91 -104.62 -0.51 -1.69 16 24 C -0.11 -1.47 9.32 -39.58 -0.37 -1.83 16 25 C -0.12 -1.50 10.05 -39.58 -0.40 -1.90 16 26 C -0.13 -1.54 10.05 -39.59 -0.40 -1.94 16 27 C -0.12 -1.53 10.05 -39.59 -0.40 -1.93 16 28 C -0.11 -1.55 9.67 -39.58 -0.38 -1.93 16 29 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.42 8.14 -51.92 -0.42 0.00 16 32 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.35 4.39 8.58 -39.29 -0.34 4.05 16 35 H 0.35 3.80 8.29 -39.29 -0.33 3.47 16 36 H 0.40 5.43 8.60 -40.82 -0.35 5.08 16 37 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.02 0.50 7.75 -51.93 -0.40 0.09 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 42 H 0.12 1.41 7.73 -52.48 -0.41 1.01 16 43 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 44 H 0.12 1.08 8.06 -52.48 -0.42 0.65 16 45 H 0.12 1.22 8.06 -52.48 -0.42 0.80 16 46 H 0.12 1.72 8.04 -52.49 -0.42 1.29 16 LS Contribution 395.54 15.07 5.96 5.96 Total: -1.00 -33.40 395.54 -10.11 -43.50 By element: Atomic # 1 Polarization: 18.59 SS G_CDS: -7.25 Total: 11.35 kcal Atomic # 6 Polarization: -15.19 SS G_CDS: -4.37 Total: -19.55 kcal Atomic # 7 Polarization: -47.95 SS G_CDS: 0.48 Total: -47.48 kcal Atomic # 8 Polarization: -10.23 SS G_CDS: 0.09 Total: -10.14 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.40 -10.11 -43.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574963704.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.244 kcal (2) G-P(sol) polarization free energy of solvation -33.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds