Wall clock time and date at job start Tue Mar 31 2020 10:57:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47194 * 1 3 3 C 1.17403 * 179.97438 * 2 1 4 4 C 1.47204 * 179.97438 * 180.89717 * 3 2 1 5 5 C 1.52997 * 109.47000 * 238.70197 * 4 3 2 6 6 H 1.08994 * 109.47401 * 54.99718 * 5 4 3 7 7 N 1.46908 * 109.46955 * 294.99668 * 5 4 3 8 8 C 1.50707 * 109.47065 * 175.00133 * 5 4 3 9 9 O 1.21284 * 119.99995 * 99.99702 * 8 5 4 10 10 N 1.34775 * 119.99766 * 279.99678 * 8 5 4 11 11 C 1.46497 * 120.00290 * 179.97438 * 10 8 5 12 12 H 1.09002 * 109.47031 * 34.99871 * 11 10 8 13 13 C 1.52992 * 109.47408 * 154.99725 * 11 10 8 14 14 C 1.52997 * 109.47482 * 295.00294 * 13 11 10 15 15 C 1.50701 * 109.47212 * 179.97438 * 14 13 11 16 16 H 1.07998 * 120.00129 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99861 * 179.97438 * 15 14 13 18 18 N 1.31510 * 119.99913 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99734 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47432 * 0.02562 * 19 17 15 21 21 H 1.48506 * 109.46890 * 120.00210 * 19 17 15 22 22 H 1.48501 * 109.47062 * 240.00257 * 19 17 15 23 23 C 1.50699 * 109.47154 * 275.00360 * 11 10 8 24 24 C 1.38236 * 119.99912 * 319.72339 * 23 11 10 25 25 C 1.38240 * 120.00151 * 179.81152 * 24 23 11 26 26 C 1.38231 * 119.99531 * 0.39579 * 25 24 23 27 27 C 1.38233 * 120.00345 * 359.85881 * 26 25 24 28 28 C 1.38232 * 120.00107 * 359.95306 * 27 26 25 29 29 H 1.08999 * 109.47039 * 120.40293 * 1 2 3 30 30 H 1.08995 * 109.47381 * 240.40278 * 1 2 3 31 31 H 1.09009 * 109.46968 * 0.40418 * 1 2 3 32 32 H 1.09004 * 109.47202 * 118.69840 * 4 3 2 33 33 H 1.09000 * 109.47243 * 358.69755 * 4 3 2 34 34 H 1.00899 * 111.00106 * 300.00267 * 7 5 4 35 35 H 1.00901 * 110.99727 * 63.95740 * 7 5 4 36 36 H 0.97003 * 119.99861 * 0.02562 * 10 8 5 37 37 H 1.09002 * 109.47103 * 175.00047 * 13 11 10 38 38 H 1.08998 * 109.46862 * 55.00859 * 13 11 10 39 39 H 1.09002 * 109.47153 * 59.99783 * 14 13 11 40 40 H 1.09001 * 109.46832 * 299.99974 * 14 13 11 41 41 H 0.97002 * 119.99768 * 179.97438 * 18 17 15 42 42 H 1.08006 * 119.99710 * 359.97438 * 24 23 11 43 43 H 1.07995 * 120.00176 * 180.22759 * 25 24 23 44 44 H 1.08006 * 119.99475 * 179.83643 * 26 25 24 45 45 H 1.08003 * 120.00170 * 179.97438 * 27 26 25 46 46 H 1.07994 * 120.00242 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4719 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0018 0.0000 5 6 4.6273 0.7517 1.2326 6 1 4.1930 0.3121 2.1305 7 7 4.2374 2.1651 1.1416 8 6 6.1293 0.6482 1.2985 9 8 6.8181 1.5707 0.9170 10 7 6.7072 -0.4696 1.7813 11 6 8.1673 -0.5705 1.8449 12 1 8.5894 0.4075 2.0760 13 6 8.5626 -1.5673 2.9362 14 6 8.1346 -1.0253 4.3014 15 6 8.5235 -2.0074 5.3762 16 1 9.0260 -2.9261 5.1121 17 6 8.2385 -1.7326 6.6970 18 7 7.6270 -0.6137 7.0187 19 14 8.7212 -2.9497 8.0293 20 1 9.3926 -4.1208 7.4104 21 1 9.6504 -2.2949 8.9848 22 1 7.5048 -3.4007 8.7519 23 6 8.6964 -1.0446 0.5158 24 6 8.0258 -2.0309 -0.1830 25 6 8.5090 -2.4631 -1.4040 26 6 9.6672 -1.9147 -1.9222 27 6 10.3407 -0.9321 -1.2209 28 6 9.8554 -0.4972 -0.0018 29 1 -0.3633 -0.5201 -0.8863 30 1 -0.3634 -0.5075 0.8935 31 1 -0.3633 1.0277 -0.0072 32 1 4.4809 0.4957 -0.9014 33 1 4.4823 -1.0252 0.0234 34 1 4.6279 2.5956 0.3168 35 1 3.2336 2.2653 1.1610 36 1 6.1563 -1.2075 2.0861 37 1 9.6433 -1.7094 2.9242 38 1 8.0687 -2.5215 2.7529 39 1 7.0540 -0.8831 4.3133 40 1 8.6286 -0.0711 4.4846 41 1 7.4262 -0.4206 7.9478 42 1 7.1229 -2.4620 0.2237 43 1 7.9831 -3.2310 -1.9517 44 1 10.0462 -2.2542 -2.8749 45 1 11.2459 -0.5039 -1.6256 46 1 10.3814 0.2707 0.5459 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574963704.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:57:18 Heat of formation + Delta-G solvation = -5.627553 kcal Electronic energy + Delta-G solvation = -25472.953936 eV Core-core repulsion = 21940.820328 eV Total energy + Delta-G solvation = -3532.133609 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.33417 -39.91483 -37.49768 -36.82338 -35.14185 -34.46723 -33.02719 -31.86150 -31.69068 -30.92869 -28.68118 -27.81880 -25.71518 -24.69345 -23.46606 -22.61216 -21.51605 -21.18384 -18.90172 -18.54305 -17.90037 -17.53842 -17.05675 -16.57586 -16.24489 -16.18955 -15.76207 -15.67030 -15.26602 -14.92798 -14.88185 -14.59186 -14.48735 -14.26300 -14.21282 -14.14724 -13.92906 -13.82062 -13.69524 -13.37678 -12.93235 -12.87736 -12.53181 -12.43388 -12.12490 -11.90850 -11.75803 -11.43530 -11.18779 -11.01735 -10.86154 -10.69054 -10.55434 -10.09239 -9.76754 -9.75477 -9.55220 -8.18121 -6.29509 0.47413 0.55306 1.40229 1.41412 1.45212 1.53968 1.71023 1.76535 2.17643 2.41597 2.93790 3.15334 3.23286 3.60572 3.77744 3.84831 3.93864 3.99396 4.02911 4.18289 4.26133 4.32397 4.36909 4.55215 4.66372 4.68009 4.68227 4.78090 4.79834 4.83547 4.84840 4.99280 5.09326 5.10530 5.18871 5.20501 5.41405 5.52273 5.61652 5.64949 5.68894 5.82896 5.86139 5.97729 6.16300 6.24495 6.43350 6.57078 6.64435 6.88252 7.25272 7.40057 8.93213 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.007498 B = 0.004272 C = 0.003055 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3733.421760 B = 6552.762035 C = 9162.989034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 C -0.181 4.181 3 C -0.223 4.223 4 C -0.021 4.021 5 C 0.091 3.909 6 H 0.108 0.892 7 N -0.834 5.834 8 C 0.522 3.478 9 O -0.569 6.569 10 N -0.704 5.704 11 C 0.194 3.806 12 H 0.060 0.940 13 C -0.094 4.094 14 C 0.031 3.969 15 C -0.539 4.539 16 H 0.062 0.938 17 C 0.001 3.999 18 N -0.932 5.932 19 Si 0.962 3.038 20 H -0.260 1.260 21 H -0.283 1.283 22 H -0.278 1.278 23 C -0.096 4.096 24 C -0.115 4.115 25 C -0.123 4.123 26 C -0.127 4.127 27 C -0.125 4.125 28 C -0.130 4.130 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.091 0.909 33 H 0.107 0.893 34 H 0.351 0.649 35 H 0.356 0.644 36 H 0.410 0.590 37 H 0.063 0.937 38 H 0.072 0.928 39 H 0.004 0.996 40 H -0.023 1.023 41 H 0.262 0.738 42 H 0.129 0.871 43 H 0.146 0.854 44 H 0.147 0.853 45 H 0.140 0.860 46 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.822 -3.358 -20.012 22.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C -0.181 4.181 3 C -0.223 4.223 4 C -0.060 4.060 5 C -0.025 4.025 6 H 0.125 0.875 7 N -0.366 5.366 8 C 0.308 3.692 9 O -0.447 6.447 10 N -0.355 5.355 11 C 0.089 3.911 12 H 0.078 0.922 13 C -0.132 4.132 14 C -0.006 4.006 15 C -0.577 4.577 16 H 0.080 0.920 17 C -0.197 4.197 18 N -0.572 5.572 19 Si 0.787 3.213 20 H -0.184 1.184 21 H -0.209 1.209 22 H -0.203 1.203 23 C -0.097 4.097 24 C -0.134 4.134 25 C -0.141 4.141 26 C -0.145 4.145 27 C -0.142 4.142 28 C -0.149 4.149 29 H 0.114 0.886 30 H 0.110 0.890 31 H 0.113 0.887 32 H 0.109 0.891 33 H 0.125 0.875 34 H 0.165 0.835 35 H 0.171 0.829 36 H 0.247 0.753 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.023 0.977 40 H -0.004 1.004 41 H 0.071 0.929 42 H 0.147 0.853 43 H 0.164 0.836 44 H 0.165 0.835 45 H 0.158 0.842 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -8.000 -2.506 -19.433 21.164 hybrid contribution -0.278 -0.599 0.568 0.871 sum -8.278 -3.105 -18.865 20.834 Atomic orbital electron populations 1.19125 0.82265 1.04420 1.04327 1.23299 0.95020 1.00113 0.99640 1.22204 0.93644 1.03130 1.03332 1.19232 0.85347 1.03158 0.98297 1.21248 0.90525 0.91004 0.99702 0.87459 1.58452 1.16827 1.12299 1.49066 1.20743 0.90625 0.81580 0.76250 1.90646 1.65691 1.39007 1.49342 1.45913 1.07104 1.18570 1.63893 1.19726 0.80217 0.98992 0.92168 0.92198 1.21705 1.01021 0.97466 0.93030 1.18946 0.95449 0.94403 0.91765 1.21701 1.37967 1.05539 0.92503 0.91970 1.25947 0.95124 0.97155 1.01483 1.70123 1.42721 1.25841 1.18535 0.85446 0.78027 0.79134 0.78715 1.18408 1.20880 1.20347 1.20214 0.96155 0.97384 0.95987 1.21096 1.00248 0.96475 0.95548 1.21441 0.96815 1.00326 0.95516 1.21480 0.95610 0.96654 1.00750 1.21368 1.00683 0.97815 0.94379 1.21175 0.96442 1.00210 0.97039 0.88630 0.89010 0.88695 0.89095 0.87494 0.83496 0.82850 0.75330 0.91836 0.90907 0.97748 1.00415 0.92940 0.85299 0.83597 0.83496 0.84244 0.86959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.49 10.32 70.17 0.72 0.23 16 2 C -0.18 -3.44 14.13 31.12 0.44 -3.00 16 3 C -0.22 -4.73 12.51 31.13 0.39 -4.34 16 4 C -0.02 -0.44 5.34 28.79 0.15 -0.29 16 5 C 0.09 2.35 3.18 44.17 0.14 2.49 16 6 H 0.11 2.78 8.14 -2.39 -0.02 2.76 16 7 N -0.83 -21.81 8.94 -171.79 -1.54 -23.35 16 8 C 0.52 17.22 7.04 87.66 0.62 17.84 16 9 O -0.57 -23.09 15.91 -3.04 -0.05 -23.13 16 10 N -0.70 -22.29 3.78 -446.11 -1.69 -23.98 16 11 C 0.19 6.91 2.17 44.24 0.10 7.00 16 12 H 0.06 2.53 7.44 -2.39 -0.02 2.51 16 13 C -0.09 -3.73 4.67 30.59 0.14 -3.58 16 14 C 0.03 1.62 4.86 29.85 0.15 1.77 16 15 C -0.54 -30.04 9.11 25.60 0.23 -29.81 16 16 H 0.06 3.31 7.74 -2.91 -0.02 3.28 16 17 C 0.00 0.04 5.46 84.66 0.46 0.50 16 18 N -0.93 -56.87 13.29 21.45 0.28 -56.59 16 19 Si 0.96 43.99 29.54 68.60 2.03 46.02 16 20 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 21 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 22 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 23 C -0.10 -2.96 4.91 -19.87 -0.10 -3.05 16 24 C -0.12 -2.94 9.32 22.27 0.21 -2.73 16 25 C -0.12 -2.60 10.05 22.27 0.22 -2.38 16 26 C -0.13 -2.61 10.05 22.27 0.22 -2.39 16 27 C -0.12 -2.96 10.05 22.27 0.22 -2.74 16 28 C -0.13 -3.86 9.67 22.27 0.22 -3.65 16 29 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 32 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 33 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.35 9.04 8.58 -89.69 -0.77 8.27 16 35 H 0.36 7.81 8.29 -89.69 -0.74 7.07 16 36 H 0.41 11.27 8.60 -92.71 -0.80 10.47 16 37 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 38 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 39 H 0.00 0.22 7.75 -2.39 -0.02 0.21 16 40 H -0.02 -1.33 8.14 -2.39 -0.02 -1.35 16 41 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 42 H 0.13 2.87 7.73 -2.91 -0.02 2.85 16 43 H 0.15 2.20 8.06 -2.91 -0.02 2.18 16 44 H 0.15 2.09 8.06 -2.91 -0.02 2.06 16 45 H 0.14 2.61 8.06 -2.91 -0.02 2.59 16 46 H 0.11 3.40 8.04 -2.91 -0.02 3.38 16 Total: -1.00 -74.03 395.54 2.27 -71.76 By element: Atomic # 1 Polarization: 38.70 SS G_CDS: -1.31 Total: 37.39 kcal Atomic # 6 Polarization: -32.66 SS G_CDS: 4.54 Total: -28.12 kcal Atomic # 7 Polarization: -100.97 SS G_CDS: -2.94 Total: -103.91 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: -0.05 Total: -23.13 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Total: -74.03 2.27 -71.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574963704.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.133 kcal (2) G-P(sol) polarization free energy of solvation -74.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds