Wall clock time and date at job start Tue Mar 31 2020 11:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32862 * 1 3 3 C 1.47121 * 120.00520 * 2 1 4 4 C 1.50703 * 119.99438 * 0.02562 * 3 2 1 5 5 C 1.32862 * 120.00520 * 179.97438 * 3 2 1 6 6 C 1.50696 * 120.00308 * 174.08633 * 5 3 2 7 7 C 1.50706 * 109.47432 * 234.28256 * 6 5 3 8 8 O 1.21274 * 119.99635 * 359.97438 * 7 6 5 9 9 N 1.34772 * 119.99831 * 179.97438 * 7 6 5 10 10 C 1.46501 * 119.99564 * 180.27531 * 9 7 6 11 11 C 1.52999 * 109.47139 * 179.72688 * 10 9 7 12 12 H 1.09010 * 109.46876 * 294.99625 * 11 10 9 13 13 N 1.46503 * 109.47247 * 54.99567 * 11 10 9 14 14 C 1.36935 * 119.99960 * 205.00220 * 13 11 10 15 15 H 1.08003 * 120.00312 * 359.97438 * 14 13 11 16 16 C 1.38808 * 120.00238 * 180.02562 * 14 13 11 17 17 N 1.31620 * 119.99635 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00497 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47110 * 59.99455 * 18 16 14 20 20 H 1.48499 * 109.47314 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47273 * 299.99796 * 18 16 14 22 22 C 1.50696 * 109.47372 * 175.00146 * 11 10 9 23 23 C 1.38239 * 119.99945 * 279.72360 * 22 11 10 24 24 C 1.38237 * 120.00333 * 179.78870 * 23 22 11 25 25 C 1.38233 * 119.99563 * 0.44056 * 24 23 22 26 26 C 1.38234 * 120.00321 * 359.81343 * 25 24 23 27 27 C 1.38235 * 120.00477 * 99.99672 * 22 11 10 28 28 H 1.08002 * 120.00286 * 179.97438 * 1 2 3 29 29 H 1.07999 * 119.99962 * 359.97438 * 1 2 3 30 30 H 1.08005 * 119.99851 * 180.02562 * 2 1 3 31 31 H 1.08997 * 109.47388 * 265.15773 * 4 3 2 32 32 H 1.09006 * 109.47309 * 25.16224 * 4 3 2 33 33 H 1.08998 * 109.46742 * 145.15883 * 4 3 2 34 34 H 1.08001 * 120.00137 * 354.09091 * 5 3 2 35 35 H 1.09002 * 109.47285 * 114.27719 * 6 5 3 36 36 H 1.09005 * 109.47202 * 354.28172 * 6 5 3 37 37 H 0.97001 * 120.00341 * 359.97438 * 9 7 6 38 38 H 1.09001 * 109.47156 * 299.71896 * 10 9 7 39 39 H 1.08999 * 109.47425 * 59.72695 * 10 9 7 40 40 H 0.96995 * 120.00260 * 25.00556 * 13 11 10 41 41 H 0.97006 * 120.00090 * 179.97438 * 17 16 14 42 42 H 1.08006 * 119.99687 * 359.97438 * 23 22 11 43 43 H 1.07992 * 119.99812 * 180.27540 * 24 23 22 44 44 H 1.07999 * 119.99944 * 179.83576 * 25 24 23 45 45 H 1.07996 * 120.00292 * 180.02562 * 26 25 24 46 46 H 1.07996 * 119.99827 * 359.97438 * 27 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3286 0.0000 0.0000 3 6 2.0643 1.2740 0.0000 4 6 1.3108 2.5792 0.0006 5 6 3.3930 1.2740 0.0005 6 6 4.1466 2.5721 -0.1339 7 6 5.1166 2.4732 -1.2831 8 8 5.1891 1.4493 -1.9289 9 7 5.9034 3.5226 -1.5930 10 6 6.8420 3.4285 -2.7138 11 6 7.6027 4.7485 -2.8542 12 1 6.9066 5.5419 -3.1268 13 7 8.2456 5.0796 -1.5800 14 6 8.5362 6.3832 -1.2781 15 1 8.2919 7.1674 -1.9794 16 6 9.1458 6.6968 -0.0711 17 7 9.4441 5.7412 0.7834 18 14 9.5416 8.4752 0.3412 19 1 8.2879 9.2710 0.3550 20 1 10.1846 8.5422 1.6780 21 1 10.4664 9.0265 -0.6816 22 6 8.6530 4.6116 -3.9262 23 6 9.8565 3.9946 -3.6399 24 6 10.8182 3.8650 -4.6244 25 6 10.5801 4.3606 -5.8927 26 6 9.3787 4.9823 -6.1775 27 6 8.4153 5.1080 -5.1942 28 1 -0.5401 -0.9353 -0.0004 29 1 -0.5400 0.9353 0.0004 30 1 1.8686 -0.9354 -0.0004 31 1 1.2039 2.9374 -1.0232 32 1 0.3237 2.4287 0.4379 33 1 1.8599 3.3153 0.5876 34 1 3.9330 0.3437 0.0972 35 1 4.6938 2.7717 0.7874 36 1 3.4428 3.3831 -0.3214 37 1 5.8451 4.3417 -1.0766 38 1 7.5489 2.6198 -2.5288 39 1 6.2916 3.2270 -3.6328 40 1 8.4655 4.3753 -0.9503 41 1 9.8704 5.9602 1.6267 42 1 10.0441 3.6110 -2.6478 43 1 11.7566 3.3790 -4.4019 44 1 11.3324 4.2618 -6.6611 45 1 9.1925 5.3691 -7.1685 46 1 7.4767 5.5936 -5.4168 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691792611.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:16:08 Heat of formation + Delta-G solvation = 26.289199 kcal Electronic energy + Delta-G solvation = -25077.137314 eV Core-core repulsion = 21546.387720 eV Total energy + Delta-G solvation = -3530.749594 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.56699 -38.79033 -36.98026 -35.84926 -33.56232 -32.55576 -31.94598 -30.42203 -29.58527 -29.07076 -27.57668 -26.27525 -23.77083 -22.82175 -21.95494 -21.21348 -20.07854 -19.69293 -17.91655 -17.46848 -16.95107 -16.35270 -15.99516 -15.68614 -15.15130 -14.74795 -14.64881 -14.18481 -14.13969 -13.76324 -13.54181 -13.29682 -13.05249 -12.91293 -12.82703 -12.69678 -12.44851 -12.25164 -11.97668 -11.65678 -11.47140 -11.12124 -10.96681 -10.92885 -10.85201 -10.71646 -10.58677 -10.47609 -10.19794 -9.82879 -9.60135 -9.09831 -8.66186 -8.41497 -8.26665 -8.18654 -7.15975 -5.89280 -3.20706 1.28005 1.85466 1.92023 2.92271 2.96709 3.36453 3.42408 3.42799 3.65796 4.30114 4.48429 4.62305 4.78821 5.05031 5.15080 5.23281 5.25990 5.32677 5.36739 5.41196 5.43103 5.46880 5.55367 5.59271 5.61447 5.64714 5.76420 5.78132 5.86917 5.92588 6.03202 6.08866 6.25848 6.28954 6.40588 6.41482 6.48203 6.62314 6.63017 6.81761 6.88166 6.93101 7.01566 7.27481 7.52124 7.60715 7.92226 8.26941 8.57314 9.39968 9.89809 10.26640 11.31974 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.010387 B = 0.003350 C = 0.002697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2695.045112 B = 8356.728473 C =10377.734781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.109 4.109 3 C -0.121 4.121 4 C -0.122 4.122 5 C -0.106 4.106 6 C -0.121 4.121 7 C 0.515 3.485 8 O -0.552 6.552 9 N -0.714 5.714 10 C 0.121 3.879 11 C 0.198 3.802 12 H 0.065 0.935 13 N -0.713 5.713 14 C -0.244 4.244 15 H 0.070 0.930 16 C -0.005 4.005 17 N -0.929 5.929 18 Si 0.906 3.094 19 H -0.285 1.285 20 H -0.291 1.291 21 H -0.286 1.286 22 C -0.082 4.082 23 C -0.083 4.083 24 C -0.128 4.128 25 C -0.134 4.134 26 C -0.130 4.130 27 C -0.120 4.120 28 H 0.098 0.902 29 H 0.101 0.899 30 H 0.113 0.887 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.118 0.882 35 H 0.107 0.893 36 H 0.101 0.899 37 H 0.411 0.589 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.387 0.613 41 H 0.257 0.743 42 H 0.123 0.877 43 H 0.113 0.887 44 H 0.111 0.889 45 H 0.112 0.888 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.095 -6.138 -5.122 13.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.127 4.127 3 C -0.121 4.121 4 C -0.179 4.179 5 C -0.124 4.124 6 C -0.160 4.160 7 C 0.301 3.699 8 O -0.430 6.430 9 N -0.366 5.366 10 C -0.003 4.003 11 C 0.087 3.913 12 H 0.083 0.917 13 N -0.354 5.354 14 C -0.375 4.375 15 H 0.088 0.912 16 C -0.202 4.202 17 N -0.576 5.576 18 Si 0.737 3.263 19 H -0.212 1.212 20 H -0.217 1.217 21 H -0.213 1.213 22 C -0.086 4.086 23 C -0.102 4.102 24 C -0.146 4.146 25 C -0.153 4.153 26 C -0.148 4.148 27 C -0.139 4.139 28 H 0.117 0.883 29 H 0.119 0.881 30 H 0.131 0.869 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.136 0.864 35 H 0.125 0.875 36 H 0.119 0.881 37 H 0.247 0.753 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.222 0.778 41 H 0.067 0.933 42 H 0.141 0.859 43 H 0.131 0.869 44 H 0.129 0.871 45 H 0.130 0.870 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -11.014 -6.661 -5.521 14.005 hybrid contribution 0.660 1.213 0.650 1.526 sum -10.354 -5.448 -4.870 12.673 Atomic orbital electron populations 1.24358 0.95709 1.01851 1.01430 1.21865 0.95268 0.96131 0.99398 1.20515 0.93899 0.94291 1.03366 1.20883 1.00097 0.94648 1.02233 1.22828 0.93802 0.97956 0.97855 1.20820 0.98350 0.98116 0.98717 1.20405 0.81077 0.83336 0.85034 1.90669 1.69285 1.29955 1.53130 1.45976 1.39274 1.17181 1.34165 1.21557 0.91478 0.98425 0.88871 1.19482 0.91301 0.93885 0.86618 0.91720 1.42446 1.71381 1.06647 1.14969 1.19139 1.33446 0.84278 1.00657 0.91167 1.24716 1.01099 0.97362 0.97004 1.69645 1.47155 1.30849 1.09928 0.86299 0.78128 0.84626 0.77284 1.21183 1.21707 1.21266 1.20987 0.97129 0.95893 0.94549 1.21010 0.92897 0.97423 0.98822 1.21107 0.99141 1.00781 0.93570 1.20981 0.97283 1.00216 0.96776 1.20982 0.94406 1.00618 0.98822 1.21009 0.99081 1.00690 0.93143 0.88348 0.88118 0.86902 0.91495 0.91649 0.91202 0.86429 0.87506 0.88082 0.75264 0.91673 0.91653 0.77841 0.93322 0.85905 0.86855 0.87087 0.86996 0.86767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.73 14.11 28.88 0.41 -1.33 16 2 C -0.11 -1.13 9.83 -37.83 -0.37 -1.50 16 3 C -0.12 -1.36 5.98 -102.87 -0.62 -1.97 16 4 C -0.12 -1.14 8.54 36.01 0.31 -0.83 16 5 C -0.11 -1.32 8.45 -36.16 -0.31 -1.62 16 6 C -0.12 -1.48 5.77 -29.03 -0.17 -1.64 16 7 C 0.52 8.16 7.82 -10.98 -0.09 8.07 16 8 O -0.55 -10.58 16.03 5.56 0.09 -10.49 16 9 N -0.71 -11.27 5.39 -60.29 -0.32 -11.59 16 10 C 0.12 2.03 5.21 -4.04 -0.02 2.01 16 11 C 0.20 3.59 2.65 -69.08 -0.18 3.41 16 12 H 0.06 1.16 7.94 -51.92 -0.41 0.75 16 13 N -0.71 -15.74 3.79 -54.55 -0.21 -15.95 16 14 C -0.24 -6.16 9.92 -15.06 -0.15 -6.31 16 15 H 0.07 1.76 7.83 -52.48 -0.41 1.35 16 16 C -0.01 -0.14 5.50 -17.43 -0.10 -0.23 16 17 N -0.93 -26.01 13.06 55.49 0.72 -25.28 16 18 Si 0.91 21.30 29.55 -169.99 -5.02 16.28 16 19 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 C -0.08 -1.47 4.92 -104.62 -0.52 -1.98 16 23 C -0.08 -1.53 9.33 -39.58 -0.37 -1.90 16 24 C -0.13 -2.08 10.05 -39.58 -0.40 -2.47 16 25 C -0.13 -1.99 10.05 -39.58 -0.40 -2.39 16 26 C -0.13 -1.91 10.05 -39.58 -0.40 -2.31 16 27 C -0.12 -1.93 9.67 -39.58 -0.38 -2.31 16 28 H 0.10 0.72 8.06 -52.49 -0.42 0.30 16 29 H 0.10 0.81 6.06 -52.49 -0.32 0.49 16 30 H 0.11 1.10 8.06 -52.48 -0.42 0.68 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.53 6.20 -51.93 -0.32 0.21 16 33 H 0.07 0.60 6.70 -51.93 -0.35 0.25 16 34 H 0.12 1.53 8.05 -52.49 -0.42 1.10 16 35 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.10 1.05 5.79 -51.93 -0.30 0.75 16 37 H 0.41 6.40 8.14 -40.82 -0.33 6.07 16 38 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 39 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.39 9.24 7.80 -40.82 -0.32 8.92 16 41 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 42 H 0.12 2.42 7.71 -52.48 -0.40 2.01 16 43 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 44 H 0.11 1.35 8.06 -52.49 -0.42 0.92 16 45 H 0.11 1.34 8.06 -52.49 -0.42 0.92 16 46 H 0.11 1.60 8.04 -52.49 -0.42 1.18 16 LS Contribution 388.41 15.07 5.85 5.85 Total: -1.00 -29.81 388.41 -9.58 -39.39 By element: Atomic # 1 Polarization: 24.06 SS G_CDS: -6.95 Total: 17.10 kcal Atomic # 6 Polarization: -11.58 SS G_CDS: -3.74 Total: -15.32 kcal Atomic # 7 Polarization: -53.02 SS G_CDS: 0.19 Total: -52.82 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.09 Total: -10.49 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -29.81 -9.58 -39.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691792611.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.684 kcal (2) G-P(sol) polarization free energy of solvation -29.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds