Wall clock time and date at job start Tue Mar 31 2020 11:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46853 * 2 1 4 4 C 1.52994 * 109.47593 * 239.99782 * 2 1 3 5 5 N 1.46901 * 109.47034 * 294.99938 * 4 2 1 6 6 C 1.46905 * 111.00215 * 179.97438 * 5 4 2 7 7 C 1.52997 * 109.47291 * 185.19983 * 6 5 4 8 8 H 1.09007 * 109.58418 * 298.31788 * 7 6 5 9 9 C 1.53189 * 109.58769 * 58.73821 * 7 6 5 10 10 C 1.53041 * 109.31618 * 174.41881 * 9 7 6 11 11 C 1.53046 * 109.53895 * 298.64329 * 10 9 7 12 12 C 1.53190 * 109.31269 * 61.36137 * 11 10 9 13 13 N 1.46922 * 109.58814 * 178.03514 * 7 6 5 14 14 C 1.34778 * 120.62935 * 6.62117 * 13 7 6 15 15 O 1.21279 * 119.99911 * 5.37633 * 14 13 7 16 16 C 1.50699 * 119.99773 * 185.37625 * 14 13 7 17 17 S 1.81007 * 109.46786 * 180.02562 * 16 14 13 18 18 C 1.76201 * 99.99907 * 180.02562 * 17 16 14 19 19 H 1.07997 * 119.99962 * 359.97438 * 18 17 16 20 20 C 1.38801 * 120.00159 * 180.02562 * 18 17 16 21 21 N 1.31624 * 120.00165 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 119.99737 * 359.97438 * 20 18 17 23 23 H 1.48505 * 109.46833 * 90.00544 * 22 20 18 24 24 H 1.48493 * 109.47230 * 210.00234 * 22 20 18 25 25 H 1.48502 * 109.47515 * 330.00382 * 22 20 18 26 26 H 1.09001 * 109.46945 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47430 * 299.99968 * 1 2 3 28 28 H 1.08999 * 109.46791 * 60.00857 * 1 2 3 29 29 H 1.09003 * 109.47265 * 119.99077 * 2 1 3 30 30 H 1.08999 * 109.46722 * 299.99185 * 3 2 1 31 31 H 1.08997 * 109.47076 * 59.99815 * 3 2 1 32 32 H 1.08998 * 109.46784 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.47097 * 54.99603 * 4 2 1 34 34 H 1.09000 * 109.47718 * 174.99846 * 4 2 1 35 35 H 1.00901 * 111.00421 * 303.95577 * 5 4 2 36 36 H 1.08996 * 109.47293 * 305.19846 * 6 5 4 37 37 H 1.09003 * 109.46604 * 65.20167 * 6 5 4 38 38 H 1.08992 * 109.50306 * 294.37583 * 9 7 6 39 39 H 1.09003 * 109.49404 * 54.47292 * 9 7 6 40 40 H 1.08990 * 109.46292 * 178.62100 * 10 9 7 41 41 H 1.09001 * 109.45493 * 58.65983 * 10 9 7 42 42 H 1.08997 * 109.49316 * 301.41019 * 11 10 9 43 43 H 1.09004 * 109.49409 * 181.31193 * 11 10 9 44 44 H 1.09002 * 109.58778 * 185.57532 * 12 11 10 45 45 H 1.09007 * 109.58941 * 65.15140 * 12 11 10 46 46 H 1.09006 * 109.47476 * 299.99766 * 16 14 13 47 47 H 1.09000 * 109.47075 * 60.00712 * 16 14 13 48 48 H 0.97002 * 120.00550 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2491 5 7 1.6516 -2.1367 -1.1902 6 6 2.1250 -2.8625 -2.3765 7 6 1.5929 -4.2965 -2.3431 8 1 1.9756 -4.8078 -1.4597 9 6 0.0616 -4.2754 -2.3048 10 6 -0.4673 -5.7075 -2.4120 11 6 -0.0257 -6.3178 -3.7443 12 6 1.5046 -6.3621 -3.7988 13 7 2.0260 -5.0108 -3.5518 14 6 2.8854 -4.4376 -4.4174 15 8 3.3844 -3.3638 -4.1549 16 6 3.2263 -5.1309 -5.7113 17 16 4.3970 -4.1173 -6.6485 18 6 4.6139 -5.1358 -8.0699 19 1 4.0866 -6.0753 -8.1466 20 6 5.4631 -4.7313 -9.0906 21 7 5.6254 -5.4924 -10.1521 22 14 6.3755 -3.1068 -8.9576 23 1 7.6848 -3.3275 -8.2924 24 1 6.5982 -2.5515 -10.3167 25 1 5.5690 -2.1500 -8.1580 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 1.8934 -0.5137 0.8901 30 1 1.6767 1.9563 -0.8901 31 1 1.6766 1.9564 0.8899 32 1 3.1300 1.4425 -0.0005 33 1 1.6055 -0.2618 -2.1369 34 1 3.1264 -0.6443 -1.2951 35 1 1.9883 -2.5692 -0.3431 36 1 1.7656 -2.3625 -3.2758 37 1 3.2149 -2.8793 -2.3811 38 1 -0.2728 -3.8334 -1.3663 39 1 -0.3150 -3.6850 -3.1401 40 1 -1.5559 -5.6974 -2.3604 41 1 -0.0704 -6.3036 -1.5903 42 1 -0.4015 -5.7081 -4.5659 43 1 -0.4223 -7.3295 -3.8301 44 1 1.8254 -6.7033 -4.7830 45 1 1.8780 -7.0432 -3.0340 46 1 3.6762 -6.1003 -5.4966 47 1 2.3183 -5.2734 -6.2973 48 1 6.2186 -5.2096 -10.8656 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724774489.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:30 Heat of formation + Delta-G solvation = -44.336769 kcal Electronic energy + Delta-G solvation = -24755.249140 eV Core-core repulsion = 21356.880925 eV Total energy + Delta-G solvation = -3398.368215 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.40463 -37.50194 -37.10528 -34.41555 -32.87915 -32.44637 -31.29845 -29.12857 -27.27191 -26.75973 -25.62283 -24.62860 -23.83595 -21.76272 -20.99774 -20.33265 -19.00391 -17.61733 -16.78647 -16.08156 -15.60076 -15.37803 -15.20974 -14.97351 -14.53628 -14.40166 -14.31720 -14.05690 -13.77926 -13.49798 -13.29668 -13.02072 -12.77723 -12.74534 -12.46122 -12.23418 -12.11012 -11.95708 -11.78130 -11.28350 -11.19180 -11.13331 -11.03073 -11.00289 -10.95589 -10.80177 -10.72515 -10.58282 -10.47992 -9.86135 -9.26523 -9.01421 -8.51882 -8.49822 -8.12071 -6.92575 -6.29888 -4.01422 2.69691 2.91602 3.16079 3.31820 3.49054 3.56575 4.18886 4.32016 4.56840 4.67678 4.68383 4.74637 4.80531 4.81828 4.94620 5.04374 5.09249 5.13290 5.20399 5.29283 5.38673 5.43206 5.50210 5.51961 5.57181 5.62524 5.67066 5.73867 5.74709 5.80403 5.84063 5.86152 5.92712 5.95370 5.98711 6.02632 6.08076 6.16694 6.21843 6.23657 6.31714 6.68291 7.01556 7.36974 7.51066 7.93213 8.40684 8.46183 9.16385 10.79418 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.012606 B = 0.003597 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.555676 B = 7781.574813 C = 9751.231519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.094 4.094 3 C -0.148 4.148 4 C 0.068 3.932 5 N -0.695 5.695 6 C 0.063 3.937 7 C 0.154 3.846 8 H 0.064 0.936 9 C -0.118 4.118 10 C -0.121 4.121 11 C -0.137 4.137 12 C 0.108 3.892 13 N -0.614 5.614 14 C 0.534 3.466 15 O -0.516 6.516 16 C -0.123 4.123 17 S -0.143 6.143 18 C -0.520 4.520 19 H 0.088 0.912 20 C 0.096 3.904 21 N -0.881 5.881 22 Si 0.857 3.143 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.236 1.236 26 H 0.065 0.935 27 H 0.044 0.956 28 H 0.050 0.950 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.071 0.929 34 H 0.029 0.971 35 H 0.331 0.669 36 H 0.080 0.920 37 H 0.067 0.933 38 H 0.082 0.918 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.068 0.932 43 H 0.073 0.927 44 H 0.090 0.910 45 H 0.067 0.933 46 H 0.094 0.906 47 H 0.096 0.904 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.575 3.315 20.982 24.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.113 4.113 3 C -0.206 4.206 4 C -0.061 4.061 5 N -0.327 5.327 6 C -0.065 4.065 7 C 0.050 3.950 8 H 0.082 0.918 9 C -0.156 4.156 10 C -0.159 4.159 11 C -0.175 4.175 12 C -0.015 4.015 13 N -0.350 5.350 14 C 0.322 3.678 15 O -0.391 6.391 16 C -0.273 4.273 17 S 0.083 5.917 18 C -0.668 4.668 19 H 0.106 0.894 20 C -0.113 4.113 21 N -0.517 5.517 22 Si 0.682 3.318 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.160 1.160 26 H 0.085 0.915 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.047 0.953 35 H 0.148 0.852 36 H 0.099 0.901 37 H 0.085 0.915 38 H 0.101 0.899 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.087 0.913 43 H 0.092 0.908 44 H 0.108 0.892 45 H 0.086 0.914 46 H 0.113 0.887 47 H 0.114 0.886 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.362 4.978 20.890 24.779 hybrid contribution 0.824 -0.939 -0.436 1.323 sum -11.538 4.040 20.454 23.829 Atomic orbital electron populations 1.21720 0.94634 1.02417 1.00674 1.21114 0.96701 0.95650 0.97797 1.21822 1.00917 0.96055 1.01779 1.21930 0.97622 0.88412 0.98172 1.60470 1.64568 1.02507 1.05139 1.22613 0.99496 0.91733 0.92686 1.21141 0.94552 0.92724 0.86560 0.91798 1.21845 0.94331 0.96203 1.03252 1.21555 1.00525 0.96609 0.97179 1.21936 0.95431 1.01569 0.98554 1.21753 0.93977 0.83138 1.02663 1.48141 1.46394 1.17111 1.23367 1.20298 0.77687 0.85411 0.84427 1.90690 1.51575 1.21551 1.75263 1.23350 1.04309 1.03449 0.96200 1.84751 1.55990 1.30459 1.20479 1.22307 1.32742 1.08434 1.03300 0.89427 1.24710 0.95323 0.97287 0.93986 1.69934 1.36713 1.37365 1.07715 0.86735 0.81744 0.84593 0.78771 1.19241 1.19947 1.15960 0.91547 0.93730 0.93115 0.91640 0.92573 0.92695 0.92819 0.91087 0.95278 0.85203 0.90118 0.91492 0.89931 0.91765 0.91881 0.92083 0.91294 0.90835 0.89154 0.91448 0.88729 0.88587 0.91940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 9.08 37.16 0.34 -0.82 16 2 C -0.09 -0.81 3.06 -90.62 -0.28 -1.09 16 3 C -0.15 -1.20 9.19 37.16 0.34 -0.85 16 4 C 0.07 0.73 5.07 -3.83 -0.02 0.71 16 5 N -0.69 -7.40 5.23 -113.78 -0.60 -8.00 16 6 C 0.06 0.85 3.56 -3.82 -0.01 0.83 16 7 C 0.15 1.82 3.19 -67.60 -0.22 1.60 16 8 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 9 C -0.12 -1.19 5.11 -26.61 -0.14 -1.33 16 10 C -0.12 -1.03 5.88 -26.69 -0.16 -1.19 16 11 C -0.14 -1.24 6.08 -26.61 -0.16 -1.40 16 12 C 0.11 1.15 6.35 -3.71 -0.02 1.13 16 13 N -0.61 -8.30 2.97 -165.22 -0.49 -8.80 16 14 C 0.53 9.45 7.55 -10.99 -0.08 9.36 16 15 O -0.52 -10.50 11.41 5.56 0.06 -10.44 16 16 C -0.12 -2.37 4.51 36.01 0.16 -2.21 16 17 S -0.14 -3.61 18.55 -107.50 -1.99 -5.60 16 18 C -0.52 -14.94 10.04 30.94 0.31 -14.63 16 19 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 20 C 0.10 2.79 5.50 -17.43 -0.10 2.70 16 21 N -0.88 -26.57 13.97 55.49 0.78 -25.80 16 22 Si 0.86 21.80 27.74 -169.99 -4.71 17.08 16 23 H -0.27 -6.73 7.11 56.52 0.40 -6.32 16 24 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.24 -5.98 6.74 56.52 0.38 -5.60 16 26 H 0.07 0.59 7.75 -51.93 -0.40 0.19 16 27 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.33 3.11 8.79 -39.29 -0.35 2.76 16 36 H 0.08 1.32 7.21 -51.93 -0.37 0.95 16 37 H 0.07 1.09 6.25 -51.93 -0.32 0.77 16 38 H 0.08 0.78 7.77 -51.93 -0.40 0.38 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.09 1.00 5.93 -51.93 -0.31 0.69 16 45 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.09 1.72 7.72 -51.91 -0.40 1.32 16 47 H 0.10 1.77 7.91 -51.92 -0.41 1.35 16 48 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 382.80 15.07 5.77 5.77 Total: -1.00 -31.46 382.80 -10.11 -41.57 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -8.89 Total: 1.40 kcal Atomic # 6 Polarization: -7.15 SS G_CDS: -0.03 Total: -7.19 kcal Atomic # 7 Polarization: -42.28 SS G_CDS: -0.31 Total: -42.59 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: 0.06 Total: -10.44 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.71 Total: 17.08 kcal Atomic # 16 Polarization: -3.61 SS G_CDS: -1.99 Total: -5.60 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.46 -10.11 -41.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724774489.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.766 kcal (2) G-P(sol) polarization free energy of solvation -31.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds