Wall clock time and date at job start Tue Mar 31 2020 11:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46853 * 2 1 4 4 C 1.52994 * 109.47593 * 239.99782 * 2 1 3 5 5 N 1.46901 * 109.47034 * 294.99938 * 4 2 1 6 6 C 1.46905 * 111.00215 * 179.97438 * 5 4 2 7 7 C 1.52997 * 109.47291 * 185.19983 * 6 5 4 8 8 H 1.09007 * 109.58418 * 298.31788 * 7 6 5 9 9 C 1.53189 * 109.58769 * 58.73821 * 7 6 5 10 10 C 1.53041 * 109.31618 * 174.41881 * 9 7 6 11 11 C 1.53046 * 109.53895 * 298.64329 * 10 9 7 12 12 C 1.53190 * 109.31269 * 61.36137 * 11 10 9 13 13 N 1.46922 * 109.58814 * 178.03514 * 7 6 5 14 14 C 1.34778 * 120.62935 * 6.62117 * 13 7 6 15 15 O 1.21279 * 119.99911 * 5.37633 * 14 13 7 16 16 C 1.50699 * 119.99773 * 185.37625 * 14 13 7 17 17 S 1.81007 * 109.46786 * 180.02562 * 16 14 13 18 18 C 1.76201 * 99.99907 * 180.02562 * 17 16 14 19 19 H 1.07997 * 119.99962 * 359.97438 * 18 17 16 20 20 C 1.38801 * 120.00159 * 180.02562 * 18 17 16 21 21 N 1.31624 * 120.00165 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 119.99737 * 359.97438 * 20 18 17 23 23 H 1.48505 * 109.46833 * 90.00544 * 22 20 18 24 24 H 1.48493 * 109.47230 * 210.00234 * 22 20 18 25 25 H 1.48502 * 109.47515 * 330.00382 * 22 20 18 26 26 H 1.09001 * 109.46945 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47430 * 299.99968 * 1 2 3 28 28 H 1.08999 * 109.46791 * 60.00857 * 1 2 3 29 29 H 1.09003 * 109.47265 * 119.99077 * 2 1 3 30 30 H 1.08999 * 109.46722 * 299.99185 * 3 2 1 31 31 H 1.08997 * 109.47076 * 59.99815 * 3 2 1 32 32 H 1.08998 * 109.46784 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.47097 * 54.99603 * 4 2 1 34 34 H 1.09000 * 109.47718 * 174.99846 * 4 2 1 35 35 H 1.00901 * 111.00421 * 303.95577 * 5 4 2 36 36 H 1.08996 * 109.47293 * 305.19846 * 6 5 4 37 37 H 1.09003 * 109.46604 * 65.20167 * 6 5 4 38 38 H 1.08992 * 109.50306 * 294.37583 * 9 7 6 39 39 H 1.09003 * 109.49404 * 54.47292 * 9 7 6 40 40 H 1.08990 * 109.46292 * 178.62100 * 10 9 7 41 41 H 1.09001 * 109.45493 * 58.65983 * 10 9 7 42 42 H 1.08997 * 109.49316 * 301.41019 * 11 10 9 43 43 H 1.09004 * 109.49409 * 181.31193 * 11 10 9 44 44 H 1.09002 * 109.58778 * 185.57532 * 12 11 10 45 45 H 1.09007 * 109.58941 * 65.15140 * 12 11 10 46 46 H 1.09006 * 109.47476 * 299.99766 * 16 14 13 47 47 H 1.09000 * 109.47075 * 60.00712 * 16 14 13 48 48 H 0.97002 * 120.00550 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2491 5 7 1.6516 -2.1367 -1.1902 6 6 2.1250 -2.8625 -2.3765 7 6 1.5929 -4.2965 -2.3431 8 1 1.9756 -4.8078 -1.4597 9 6 0.0616 -4.2754 -2.3048 10 6 -0.4673 -5.7075 -2.4120 11 6 -0.0257 -6.3178 -3.7443 12 6 1.5046 -6.3621 -3.7988 13 7 2.0260 -5.0108 -3.5518 14 6 2.8854 -4.4376 -4.4174 15 8 3.3844 -3.3638 -4.1549 16 6 3.2263 -5.1309 -5.7113 17 16 4.3970 -4.1173 -6.6485 18 6 4.6139 -5.1358 -8.0699 19 1 4.0866 -6.0753 -8.1466 20 6 5.4631 -4.7313 -9.0906 21 7 5.6254 -5.4924 -10.1521 22 14 6.3755 -3.1068 -8.9576 23 1 7.6848 -3.3275 -8.2924 24 1 6.5982 -2.5515 -10.3167 25 1 5.5690 -2.1500 -8.1580 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 1.8934 -0.5137 0.8901 30 1 1.6767 1.9563 -0.8901 31 1 1.6766 1.9564 0.8899 32 1 3.1300 1.4425 -0.0005 33 1 1.6055 -0.2618 -2.1369 34 1 3.1264 -0.6443 -1.2951 35 1 1.9883 -2.5692 -0.3431 36 1 1.7656 -2.3625 -3.2758 37 1 3.2149 -2.8793 -2.3811 38 1 -0.2728 -3.8334 -1.3663 39 1 -0.3150 -3.6850 -3.1401 40 1 -1.5559 -5.6974 -2.3604 41 1 -0.0704 -6.3036 -1.5903 42 1 -0.4015 -5.7081 -4.5659 43 1 -0.4223 -7.3295 -3.8301 44 1 1.8254 -6.7033 -4.7830 45 1 1.8780 -7.0432 -3.0340 46 1 3.6762 -6.1003 -5.4966 47 1 2.3183 -5.2734 -6.2973 48 1 6.2186 -5.2096 -10.8656 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724774489.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:29:29 Heat of formation + Delta-G solvation = -63.666248 kcal Electronic energy + Delta-G solvation = -24756.087329 eV Core-core repulsion = 21356.880925 eV Total energy + Delta-G solvation = -3399.206404 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.59614 -38.56567 -38.06226 -35.31950 -34.69591 -33.91717 -32.24105 -30.50710 -27.98070 -27.91069 -27.63966 -25.58858 -24.75378 -22.80276 -21.97159 -21.10351 -20.35209 -19.45355 -18.04719 -17.29646 -17.07887 -16.75080 -16.45122 -16.14313 -15.73175 -15.40200 -15.25393 -15.20819 -14.94795 -14.93794 -14.55133 -14.28395 -13.99826 -13.63677 -13.47683 -13.35821 -13.24331 -13.06500 -12.99380 -12.88011 -12.68896 -12.61998 -12.04125 -11.96513 -11.88480 -11.78707 -11.73222 -11.57004 -11.50421 -11.31144 -11.19281 -10.56092 -10.52979 -9.63032 -9.18003 -9.01601 -8.53614 -6.24247 0.95912 1.28698 1.43451 1.50602 1.53211 2.02542 2.22666 2.66018 2.84603 3.20523 3.58078 3.80991 3.88824 3.95018 4.02296 4.08206 4.12665 4.17066 4.28155 4.30767 4.36286 4.41119 4.53590 4.63624 4.70591 4.75743 4.76790 4.83671 4.87776 4.98407 5.00782 5.05942 5.09888 5.13522 5.14769 5.24919 5.27510 5.28481 5.45427 5.51348 5.55232 5.65890 5.68932 5.99070 6.09319 6.29708 6.50909 6.91614 7.12109 8.58939 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.012606 B = 0.003597 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2220.555676 B = 7781.574813 C = 9751.231519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.087 4.087 3 C -0.147 4.147 4 C 0.069 3.931 5 N -0.680 5.680 6 C 0.077 3.923 7 C 0.153 3.847 8 H 0.086 0.914 9 C -0.109 4.109 10 C -0.116 4.116 11 C -0.133 4.133 12 C 0.099 3.901 13 N -0.603 5.603 14 C 0.531 3.469 15 O -0.550 6.550 16 C -0.107 4.107 17 S -0.175 6.175 18 C -0.528 4.528 19 H 0.062 0.938 20 C 0.046 3.954 21 N -0.917 5.917 22 Si 0.914 3.086 23 H -0.262 1.262 24 H -0.258 1.258 25 H -0.239 1.239 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.041 0.959 29 H 0.076 0.924 30 H 0.049 0.951 31 H 0.069 0.931 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.015 0.985 35 H 0.344 0.656 36 H 0.046 0.954 37 H 0.036 0.964 38 H 0.095 0.905 39 H 0.042 0.958 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.052 0.948 43 H 0.097 0.903 44 H 0.084 0.916 45 H 0.092 0.908 46 H 0.108 0.892 47 H 0.105 0.895 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.867 2.977 23.546 27.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.106 4.106 3 C -0.205 4.205 4 C -0.060 4.060 5 N -0.313 5.313 6 C -0.052 4.052 7 C 0.050 3.950 8 H 0.103 0.897 9 C -0.147 4.147 10 C -0.153 4.153 11 C -0.171 4.171 12 C -0.023 4.023 13 N -0.337 5.337 14 C 0.319 3.681 15 O -0.428 6.428 16 C -0.258 4.258 17 S 0.052 5.948 18 C -0.675 4.675 19 H 0.080 0.920 20 C -0.159 4.159 21 N -0.555 5.555 22 Si 0.736 3.264 23 H -0.187 1.187 24 H -0.183 1.183 25 H -0.163 1.163 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.060 0.940 29 H 0.095 0.905 30 H 0.068 0.932 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.033 0.967 35 H 0.162 0.838 36 H 0.064 0.936 37 H 0.054 0.946 38 H 0.113 0.887 39 H 0.061 0.939 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.071 0.929 43 H 0.116 0.884 44 H 0.102 0.898 45 H 0.110 0.890 46 H 0.126 0.874 47 H 0.123 0.877 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.689 4.606 23.480 27.566 hybrid contribution 1.122 -0.919 -1.145 1.847 sum -12.567 3.687 22.335 25.892 Atomic orbital electron populations 1.21681 0.94153 1.02278 1.00931 1.21072 0.96969 0.95788 0.96739 1.21822 1.00786 0.95691 1.02222 1.21929 0.96687 0.88618 0.98813 1.60441 1.63890 1.02295 1.04652 1.22232 0.97446 0.92998 0.92475 1.21309 0.95944 0.91472 0.86238 0.89652 1.21774 0.92467 0.97516 1.02976 1.21548 1.01416 0.95171 0.97211 1.21930 0.93853 1.02813 0.98511 1.22066 0.95349 0.81631 1.03268 1.48170 1.44722 1.18057 1.22775 1.20017 0.78622 0.85035 0.84449 1.90709 1.53297 1.22901 1.75912 1.23316 1.02924 1.02903 0.96618 1.84664 1.58411 1.31772 1.19952 1.22445 1.32261 1.07976 1.04842 0.92018 1.25548 0.96169 1.00476 0.93730 1.70009 1.37744 1.39148 1.08571 0.85874 0.80477 0.80657 0.79397 1.18658 1.18263 1.16254 0.91853 0.92316 0.94010 0.90531 0.93152 0.91227 0.93072 0.92918 0.96688 0.83779 0.93566 0.94622 0.88707 0.93894 0.90480 0.90369 0.92865 0.88411 0.89769 0.88958 0.87351 0.87658 0.91336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.03 9.08 71.98 0.65 -1.38 16 2 C -0.09 -1.40 3.06 -10.79 -0.03 -1.43 16 3 C -0.15 -2.22 9.19 71.98 0.66 -1.56 16 4 C 0.07 1.50 5.07 86.30 0.44 1.94 16 5 N -0.68 -14.04 5.23 -513.89 -2.69 -16.73 16 6 C 0.08 2.11 3.56 86.30 0.31 2.42 16 7 C 0.15 3.38 3.19 44.97 0.14 3.52 16 8 H 0.09 1.60 8.14 -2.38 -0.02 1.58 16 9 C -0.11 -1.95 5.11 30.67 0.16 -1.80 16 10 C -0.12 -1.55 5.88 30.62 0.18 -1.37 16 11 C -0.13 -2.02 6.08 30.67 0.19 -1.84 16 12 C 0.10 1.87 6.35 86.36 0.55 2.41 16 13 N -0.60 -15.56 2.97 -795.03 -2.36 -17.92 16 14 C 0.53 18.85 7.55 87.66 0.66 19.51 16 15 O -0.55 -23.04 11.41 -3.03 -0.03 -23.08 16 16 C -0.11 -4.15 4.51 71.24 0.32 -3.83 16 17 S -0.17 -8.93 18.55 -56.49 -1.05 -9.98 16 18 C -0.53 -30.97 10.04 67.95 0.68 -30.28 16 19 H 0.06 3.81 8.03 -2.91 -0.02 3.79 16 20 C 0.05 2.73 5.50 84.86 0.47 3.20 16 21 N -0.92 -56.12 13.97 21.65 0.30 -55.82 16 22 Si 0.91 45.42 27.74 68.60 1.90 47.32 16 23 H -0.26 -12.68 7.11 99.48 0.71 -11.97 16 24 H -0.26 -12.02 7.11 99.48 0.71 -11.32 16 25 H -0.24 -11.89 6.74 99.48 0.67 -11.22 16 26 H 0.06 1.00 7.75 -2.39 -0.02 0.99 16 27 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.07 0.85 8.14 -2.39 -0.02 0.84 16 32 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 34 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 35 H 0.34 5.83 8.79 -89.69 -0.79 5.04 16 36 H 0.05 1.59 7.21 -2.39 -0.02 1.57 16 37 H 0.04 1.21 6.25 -2.39 -0.01 1.19 16 38 H 0.09 1.51 7.77 -2.39 -0.02 1.49 16 39 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.08 1.71 5.93 -2.39 -0.01 1.70 16 45 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 46 H 0.11 3.90 7.72 -2.39 -0.02 3.88 16 47 H 0.11 3.88 7.91 -2.39 -0.02 3.86 16 48 H 0.28 15.67 8.31 -92.71 -0.77 14.90 16 Total: -1.00 -70.19 382.80 1.54 -68.65 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: 0.09 Total: 18.04 kcal Atomic # 6 Polarization: -15.86 SS G_CDS: 5.37 Total: -10.48 kcal Atomic # 7 Polarization: -85.72 SS G_CDS: -4.75 Total: -90.47 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: -0.03 Total: -23.08 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 1.90 Total: 47.32 kcal Atomic # 16 Polarization: -8.93 SS G_CDS: -1.05 Total: -9.98 kcal Total: -70.19 1.54 -68.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724774489.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.985 kcal (2) G-P(sol) polarization free energy of solvation -70.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds