Wall clock time and date at job start Tue Mar 31 2020 12:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50696 * 120.00003 * 2 1 4 4 H 1.08999 * 109.47143 * 0.02562 * 3 2 1 5 5 C 1.50703 * 109.46884 * 120.00655 * 3 2 1 6 6 O 1.21284 * 119.99970 * 120.00468 * 5 3 2 7 7 N 1.34779 * 119.99668 * 299.99679 * 5 3 2 8 8 C 1.47015 * 125.64906 * 359.96444 * 7 5 3 9 9 C 1.54332 * 107.26886 * 178.96951 * 8 7 5 10 10 C 1.55156 * 102.94209 * 337.80910 * 9 8 7 11 11 H 1.09002 * 111.00322 * 277.42573 * 10 9 8 12 12 C 1.52997 * 111.03706 * 153.58751 * 10 9 8 13 13 N 1.46505 * 109.47236 * 69.60639 * 12 10 9 14 14 C 1.36937 * 120.00304 * 180.02562 * 13 12 10 15 15 H 1.08001 * 119.99862 * 359.97438 * 14 13 12 16 16 C 1.38805 * 119.99963 * 179.97438 * 14 13 12 17 17 N 1.31616 * 120.00450 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 119.99887 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.47104 * 60.00215 * 18 16 14 20 20 H 1.48495 * 109.47001 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.46842 * 299.99709 * 18 16 14 22 22 C 1.47431 * 125.64364 * 179.97438 * 7 5 3 23 23 C 1.50702 * 109.47282 * 240.00626 * 3 2 1 24 24 C 1.38234 * 120.00013 * 299.72470 * 23 3 2 25 25 C 1.38235 * 119.99974 * 179.74137 * 24 23 3 26 26 C 1.38233 * 119.99945 * 0.53666 * 25 24 23 27 27 C 1.38241 * 120.00009 * 359.73946 * 26 25 24 28 28 C 1.38233 * 120.00065 * 120.00273 * 23 3 2 29 29 H 1.08002 * 120.00109 * 180.02562 * 1 2 3 30 30 H 1.08000 * 119.99990 * 359.97438 * 1 2 3 31 31 H 1.08000 * 119.99990 * 180.02562 * 2 1 3 32 32 H 1.08996 * 109.88718 * 298.38672 * 8 7 5 33 33 H 1.08998 * 109.88586 * 59.40568 * 8 7 5 34 34 H 1.08996 * 110.72440 * 219.44138 * 9 8 7 35 35 H 1.09009 * 110.71674 * 96.16956 * 9 8 7 36 36 H 1.09007 * 109.47276 * 189.60126 * 12 10 9 37 37 H 1.09004 * 109.47247 * 309.60372 * 12 10 9 38 38 H 0.97002 * 119.99741 * 359.97438 * 13 12 10 39 39 H 0.96995 * 120.00292 * 179.97438 * 17 16 14 40 40 H 1.08998 * 110.36348 * 85.25854 * 22 7 5 41 41 H 1.09004 * 110.36685 * 322.93865 * 22 7 5 42 42 H 1.08002 * 119.99679 * 0.02562 * 24 23 3 43 43 H 1.07998 * 120.00073 * 180.29403 * 25 24 23 44 44 H 1.07994 * 120.00308 * 179.76530 * 26 25 24 45 45 H 1.08006 * 120.00070 * 179.97438 * 27 26 25 46 46 H 1.08007 * 119.99906 * 359.97438 * 28 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3552 2.1336 0.0005 5 6 2.9300 1.3848 1.2304 6 8 4.1326 1.4956 1.1190 7 7 2.3685 1.3330 2.4546 8 6 0.9309 1.2014 2.7329 9 6 0.7632 1.1589 4.2665 10 6 2.1620 0.6998 4.7564 11 1 2.2607 -0.3841 4.6963 12 6 2.4356 1.1944 6.1782 13 7 1.5681 0.4810 7.1188 14 6 1.6354 0.7587 8.4581 15 1 2.3284 1.5034 8.8209 16 6 0.8131 0.0831 9.3492 17 7 -0.0317 -0.8241 8.9070 18 14 0.9055 0.4615 11.1762 19 1 0.5803 1.8926 11.4023 20 1 -0.0673 -0.3893 11.9076 21 1 2.2774 0.1813 11.6709 22 6 3.0942 1.3992 3.7362 23 6 2.9298 1.3850 -1.2305 24 6 3.9128 0.4374 -1.4466 25 6 4.7038 0.5076 -2.5780 26 6 4.5194 1.5319 -3.4878 27 6 3.5402 2.4828 -3.2689 28 6 2.7454 2.4092 -2.1403 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 0.3943 2.0579 2.3249 33 1 0.5504 0.2807 2.2906 34 1 -0.0014 0.4362 4.5510 35 1 0.5239 2.1486 4.6558 36 1 3.4789 1.0081 6.4333 37 1 2.2327 2.2638 6.2362 38 1 0.9455 -0.1876 6.7929 39 1 -0.6061 -1.2964 9.5297 40 1 3.2610 2.4370 4.0244 41 1 4.0430 0.8677 3.6628 42 1 4.0596 -0.3605 -0.7337 43 1 5.4686 -0.2355 -2.7492 44 1 5.1399 1.5890 -4.3698 45 1 3.3963 3.2833 -3.9795 46 1 1.9801 3.1520 -1.9695 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752961155.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:50 Heat of formation + Delta-G solvation = 23.150151 kcal Electronic energy + Delta-G solvation = -25481.066742 eV Core-core repulsion = 21950.181029 eV Total energy + Delta-G solvation = -3530.885714 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.62513 -39.14201 -37.54279 -35.47807 -34.61700 -32.17703 -31.43480 -31.03108 -30.24314 -29.05672 -27.50530 -25.22227 -23.15772 -22.87027 -22.39310 -21.73381 -20.59139 -20.04093 -19.02913 -17.42619 -17.12258 -16.91957 -16.17701 -15.68428 -15.37448 -15.18207 -14.70520 -14.37285 -14.20989 -13.69937 -13.56223 -13.47366 -13.30527 -13.13860 -12.92754 -12.85706 -12.51705 -12.40393 -12.32056 -11.73703 -11.61780 -11.30534 -11.18164 -11.08715 -10.85813 -10.68386 -10.54579 -10.42776 -10.22441 -10.04257 -9.71388 -9.39505 -9.02879 -8.89063 -8.88679 -8.59387 -6.94572 -5.78534 -3.07204 1.13885 1.27942 1.91335 2.59629 2.96113 3.43374 3.47799 3.48677 3.66327 4.35025 4.47333 4.53580 4.63463 4.68708 4.76981 4.84163 4.85050 4.94002 4.97271 5.09401 5.18352 5.32888 5.34172 5.45087 5.48874 5.55717 5.60629 5.66166 5.78157 5.88298 5.89473 6.03016 6.03839 6.11695 6.19994 6.24220 6.26862 6.32785 6.35704 6.38363 6.42927 6.47331 6.71077 6.83200 6.83346 7.51861 7.68234 8.12377 8.40426 9.51780 10.08659 10.43698 11.44295 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.033451 B = 0.002349 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.856183 B =11918.529368 C =12313.691772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.145 4.145 3 C -0.035 4.035 4 H 0.105 0.895 5 C 0.535 3.465 6 O -0.534 6.534 7 N -0.611 5.611 8 C 0.093 3.907 9 C -0.121 4.121 10 C -0.105 4.105 11 H 0.084 0.916 12 C 0.164 3.836 13 N -0.731 5.731 14 C -0.240 4.240 15 H 0.070 0.930 16 C -0.014 4.014 17 N -0.934 5.934 18 Si 0.908 3.092 19 H -0.286 1.286 20 H -0.291 1.291 21 H -0.286 1.286 22 C 0.113 3.887 23 C -0.061 4.061 24 C -0.081 4.081 25 C -0.122 4.122 26 C -0.121 4.121 27 C -0.124 4.124 28 C -0.111 4.111 29 H 0.107 0.893 30 H 0.101 0.899 31 H 0.116 0.884 32 H 0.063 0.937 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.022 0.978 37 H 0.022 0.978 38 H 0.384 0.616 39 H 0.256 0.744 40 H 0.069 0.931 41 H 0.077 0.923 42 H 0.119 0.881 43 H 0.121 0.879 44 H 0.119 0.881 45 H 0.121 0.879 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.109 3.918 -25.490 25.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.056 4.056 4 H 0.123 0.877 5 C 0.322 3.678 6 O -0.411 6.411 7 N -0.345 5.345 8 C -0.029 4.029 9 C -0.159 4.159 10 C -0.124 4.124 11 H 0.102 0.898 12 C 0.036 3.964 13 N -0.375 5.375 14 C -0.371 4.371 15 H 0.088 0.912 16 C -0.210 4.210 17 N -0.583 5.583 18 Si 0.739 3.261 19 H -0.213 1.213 20 H -0.217 1.217 21 H -0.213 1.213 22 C -0.010 4.010 23 C -0.062 4.062 24 C -0.099 4.099 25 C -0.140 4.140 26 C -0.139 4.139 27 C -0.142 4.142 28 C -0.129 4.129 29 H 0.125 0.875 30 H 0.119 0.881 31 H 0.134 0.866 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.105 0.895 35 H 0.097 0.903 36 H 0.040 0.960 37 H 0.040 0.960 38 H 0.218 0.782 39 H 0.065 0.935 40 H 0.088 0.912 41 H 0.095 0.905 42 H 0.137 0.863 43 H 0.139 0.861 44 H 0.137 0.863 45 H 0.139 0.861 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 2.831 4.057 -25.458 25.934 hybrid contribution -0.276 -0.028 1.024 1.061 sum 2.554 4.029 -24.435 24.896 Atomic orbital electron populations 1.23950 0.95400 1.02610 0.99002 1.22566 0.95870 0.96648 1.01288 1.19424 0.96593 0.98477 0.91131 0.87705 1.19922 0.88209 0.76589 0.83040 1.90726 1.14707 1.49718 1.85921 1.48494 1.08650 1.71946 1.05366 1.22357 0.81058 1.01579 0.97932 1.22656 0.98191 1.03213 0.91822 1.22552 0.93984 1.00601 0.95287 0.89759 1.20549 0.94454 0.95067 0.86297 1.42295 1.45281 1.46795 1.03122 1.19181 1.17162 1.17438 0.83309 0.91222 1.24733 0.99059 0.99099 0.98071 1.69640 1.26563 1.28281 1.33792 0.86258 0.77167 0.77445 0.85260 1.21266 1.21699 1.21266 1.22264 0.96038 1.00966 0.81718 1.19201 0.96608 0.95907 0.94476 1.20915 0.94226 0.98352 0.96427 1.21118 0.99580 0.98750 0.94594 1.21135 0.98260 0.95083 0.99394 1.21053 0.96327 0.99199 0.97640 1.20978 0.99871 0.97563 0.94531 0.87492 0.88118 0.86623 0.91871 0.90689 0.89491 0.90317 0.96031 0.95988 0.78242 0.93465 0.91234 0.90478 0.86326 0.86126 0.86267 0.86133 0.86218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.27 12.51 29.01 0.36 -0.91 16 2 C -0.15 -1.31 6.96 -36.03 -0.25 -1.56 16 3 C -0.04 -0.37 2.21 -94.08 -0.21 -0.57 16 4 H 0.10 0.93 7.52 -51.93 -0.39 0.54 16 5 C 0.53 7.32 7.07 -10.98 -0.08 7.25 16 6 O -0.53 -9.14 15.34 5.55 0.09 -9.05 16 7 N -0.61 -8.04 3.32 -170.53 -0.57 -8.60 16 8 C 0.09 1.05 5.83 -3.06 -0.02 1.03 16 9 C -0.12 -1.65 6.28 -24.89 -0.16 -1.81 16 10 C -0.10 -1.62 3.06 -88.49 -0.27 -1.89 16 11 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 12 C 0.16 3.19 5.71 -4.04 -0.02 3.16 16 13 N -0.73 -17.97 5.50 -59.90 -0.33 -18.30 16 14 C -0.24 -6.62 9.99 -15.06 -0.15 -6.77 16 15 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 16 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 17 N -0.93 -27.79 13.06 55.49 0.72 -27.06 16 18 Si 0.91 22.23 29.55 -169.99 -5.02 17.20 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 22 C 0.11 1.61 6.37 -2.54 -0.02 1.60 16 23 C -0.06 -0.68 4.39 -104.62 -0.46 -1.14 16 24 C -0.08 -0.93 8.03 -39.58 -0.32 -1.25 16 25 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 26 C -0.12 -1.10 10.05 -39.58 -0.40 -1.50 16 27 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 28 C -0.11 -1.10 9.67 -39.59 -0.38 -1.48 16 29 H 0.11 0.69 8.06 -52.49 -0.42 0.27 16 30 H 0.10 0.64 7.83 -52.49 -0.41 0.23 16 31 H 0.12 1.06 8.05 -52.49 -0.42 0.64 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.77 5.54 -51.93 -0.29 0.48 16 34 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.08 1.11 7.97 -51.92 -0.41 0.70 16 36 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16 37 H 0.02 0.43 8.04 -51.93 -0.42 0.01 16 38 H 0.38 9.83 7.63 -40.82 -0.31 9.51 16 39 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 40 H 0.07 0.99 8.04 -51.93 -0.42 0.57 16 41 H 0.08 1.15 8.04 -51.93 -0.42 0.74 16 42 H 0.12 1.38 7.97 -52.49 -0.42 0.96 16 43 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 44 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 45 H 0.12 0.81 8.06 -52.48 -0.42 0.38 16 46 H 0.12 0.94 7.95 -52.48 -0.42 0.52 16 LS Contribution 377.34 15.07 5.69 5.69 Total: -1.00 -32.50 377.34 -9.93 -42.43 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: -7.25 Total: 7.17 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: -3.26 Total: -9.48 kcal Atomic # 7 Polarization: -53.79 SS G_CDS: -0.17 Total: -53.96 kcal Atomic # 8 Polarization: -9.14 SS G_CDS: 0.09 Total: -9.05 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.50 -9.93 -42.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752961155.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.580 kcal (2) G-P(sol) polarization free energy of solvation -32.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.430 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds