Wall clock time and date at job start Tue Mar 31 2020 12:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50696 * 120.00003 * 2 1 4 4 H 1.08999 * 109.47143 * 0.02562 * 3 2 1 5 5 C 1.50703 * 109.46884 * 120.00655 * 3 2 1 6 6 O 1.21284 * 119.99970 * 120.00468 * 5 3 2 7 7 N 1.34779 * 119.99668 * 299.99679 * 5 3 2 8 8 C 1.47015 * 125.64906 * 359.96444 * 7 5 3 9 9 C 1.54332 * 107.26886 * 178.96951 * 8 7 5 10 10 C 1.55156 * 102.94209 * 337.80910 * 9 8 7 11 11 H 1.09002 * 111.00322 * 277.42573 * 10 9 8 12 12 C 1.52997 * 111.03706 * 153.58751 * 10 9 8 13 13 N 1.46505 * 109.47236 * 69.60639 * 12 10 9 14 14 C 1.36937 * 120.00304 * 180.02562 * 13 12 10 15 15 H 1.08001 * 119.99862 * 359.97438 * 14 13 12 16 16 C 1.38805 * 119.99963 * 179.97438 * 14 13 12 17 17 N 1.31616 * 120.00450 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 119.99887 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.47104 * 60.00215 * 18 16 14 20 20 H 1.48495 * 109.47001 * 180.02562 * 18 16 14 21 21 H 1.48498 * 109.46842 * 299.99709 * 18 16 14 22 22 C 1.47431 * 125.64364 * 179.97438 * 7 5 3 23 23 C 1.50702 * 109.47282 * 240.00626 * 3 2 1 24 24 C 1.38234 * 120.00013 * 299.72470 * 23 3 2 25 25 C 1.38235 * 119.99974 * 179.74137 * 24 23 3 26 26 C 1.38233 * 119.99945 * 0.53666 * 25 24 23 27 27 C 1.38241 * 120.00009 * 359.73946 * 26 25 24 28 28 C 1.38233 * 120.00065 * 120.00273 * 23 3 2 29 29 H 1.08002 * 120.00109 * 180.02562 * 1 2 3 30 30 H 1.08000 * 119.99990 * 359.97438 * 1 2 3 31 31 H 1.08000 * 119.99990 * 180.02562 * 2 1 3 32 32 H 1.08996 * 109.88718 * 298.38672 * 8 7 5 33 33 H 1.08998 * 109.88586 * 59.40568 * 8 7 5 34 34 H 1.08996 * 110.72440 * 219.44138 * 9 8 7 35 35 H 1.09009 * 110.71674 * 96.16956 * 9 8 7 36 36 H 1.09007 * 109.47276 * 189.60126 * 12 10 9 37 37 H 1.09004 * 109.47247 * 309.60372 * 12 10 9 38 38 H 0.97002 * 119.99741 * 359.97438 * 13 12 10 39 39 H 0.96995 * 120.00292 * 179.97438 * 17 16 14 40 40 H 1.08998 * 110.36348 * 85.25854 * 22 7 5 41 41 H 1.09004 * 110.36685 * 322.93865 * 22 7 5 42 42 H 1.08002 * 119.99679 * 0.02562 * 24 23 3 43 43 H 1.07998 * 120.00073 * 180.29403 * 25 24 23 44 44 H 1.07994 * 120.00308 * 179.76530 * 26 25 24 45 45 H 1.08006 * 120.00070 * 179.97438 * 27 26 25 46 46 H 1.08007 * 119.99906 * 359.97438 * 28 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 1 1.3552 2.1336 0.0005 5 6 2.9300 1.3848 1.2304 6 8 4.1326 1.4956 1.1190 7 7 2.3685 1.3330 2.4546 8 6 0.9309 1.2014 2.7329 9 6 0.7632 1.1589 4.2665 10 6 2.1620 0.6998 4.7564 11 1 2.2607 -0.3841 4.6963 12 6 2.4356 1.1944 6.1782 13 7 1.5681 0.4810 7.1188 14 6 1.6354 0.7587 8.4581 15 1 2.3284 1.5034 8.8209 16 6 0.8131 0.0831 9.3492 17 7 -0.0317 -0.8241 8.9070 18 14 0.9055 0.4615 11.1762 19 1 0.5803 1.8926 11.4023 20 1 -0.0673 -0.3893 11.9076 21 1 2.2774 0.1813 11.6709 22 6 3.0942 1.3992 3.7362 23 6 2.9298 1.3850 -1.2305 24 6 3.9128 0.4374 -1.4466 25 6 4.7038 0.5076 -2.5780 26 6 4.5194 1.5319 -3.4878 27 6 3.5402 2.4828 -3.2689 28 6 2.7454 2.4092 -2.1403 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 0.3943 2.0579 2.3249 33 1 0.5504 0.2807 2.2906 34 1 -0.0014 0.4362 4.5510 35 1 0.5239 2.1486 4.6558 36 1 3.4789 1.0081 6.4333 37 1 2.2327 2.2638 6.2362 38 1 0.9455 -0.1876 6.7929 39 1 -0.6061 -1.2964 9.5297 40 1 3.2610 2.4370 4.0244 41 1 4.0430 0.8677 3.6628 42 1 4.0596 -0.3605 -0.7337 43 1 5.4686 -0.2355 -2.7492 44 1 5.1399 1.5890 -4.3698 45 1 3.3963 3.2833 -3.9795 46 1 1.9801 3.1520 -1.9695 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752961155.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:01:49 Heat of formation + Delta-G solvation = 5.065565 kcal Electronic energy + Delta-G solvation = -25481.850949 eV Core-core repulsion = 21950.181029 eV Total energy + Delta-G solvation = -3531.669920 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.59537 -40.01697 -38.69568 -36.52715 -36.10517 -33.84095 -32.13207 -31.84849 -31.73222 -30.26873 -28.46536 -26.81202 -24.56782 -23.87563 -23.59298 -22.50682 -21.39999 -21.35431 -19.94126 -19.15255 -18.26390 -17.84461 -17.31134 -16.64711 -16.53472 -16.13794 -15.98830 -15.58813 -15.30563 -14.99383 -14.88295 -14.76606 -14.29591 -14.15354 -13.95565 -13.92766 -13.72129 -13.43764 -13.18754 -13.00184 -12.97519 -12.72911 -12.35690 -12.23528 -12.12965 -12.00552 -11.80589 -11.76557 -11.67702 -11.64481 -11.19704 -10.91576 -10.18934 -9.76865 -9.67621 -9.60478 -8.98928 -7.94257 -5.22693 0.40588 0.54544 1.25172 1.48677 1.51185 1.57211 1.59900 1.94737 2.56919 2.91756 3.36493 3.41122 3.64977 3.67717 3.72500 3.88997 3.94689 3.99290 4.18274 4.19148 4.28705 4.29627 4.30993 4.43962 4.52581 4.56600 4.62649 4.65502 4.77396 4.79782 4.83069 5.00417 5.02162 5.07540 5.09929 5.17278 5.23427 5.26127 5.40339 5.50750 5.56985 5.63802 5.64877 5.65279 5.74844 6.13296 6.27966 6.48875 7.07559 7.35152 8.09654 8.34446 9.28844 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.033451 B = 0.002349 C = 0.002273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.856183 B =11918.529368 C =12313.691772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.167 4.167 3 C -0.024 4.024 4 H 0.127 0.873 5 C 0.531 3.469 6 O -0.576 6.576 7 N -0.611 5.611 8 C 0.101 3.899 9 C -0.117 4.117 10 C -0.096 4.096 11 H 0.075 0.925 12 C 0.165 3.835 13 N -0.741 5.741 14 C -0.247 4.247 15 H 0.074 0.926 16 C -0.073 4.073 17 N -0.967 5.967 18 Si 0.972 3.028 19 H -0.277 1.277 20 H -0.295 1.295 21 H -0.281 1.281 22 C 0.118 3.882 23 C -0.078 4.078 24 C -0.104 4.104 25 C -0.136 4.136 26 C -0.126 4.126 27 C -0.128 4.128 28 C -0.120 4.120 29 H 0.118 0.882 30 H 0.119 0.881 31 H 0.105 0.895 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.017 0.983 37 H 0.027 0.973 38 H 0.376 0.624 39 H 0.252 0.748 40 H 0.073 0.927 41 H 0.065 0.935 42 H 0.103 0.897 43 H 0.132 0.868 44 H 0.143 0.857 45 H 0.147 0.853 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.136 5.295 -26.877 27.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.185 4.185 3 C -0.045 4.045 4 H 0.145 0.855 5 C 0.321 3.679 6 O -0.455 6.455 7 N -0.344 5.344 8 C -0.021 4.021 9 C -0.155 4.155 10 C -0.115 4.115 11 H 0.093 0.907 12 C 0.038 3.962 13 N -0.384 5.384 14 C -0.379 4.379 15 H 0.092 0.908 16 C -0.266 4.266 17 N -0.617 5.617 18 Si 0.801 3.199 19 H -0.203 1.203 20 H -0.221 1.221 21 H -0.207 1.207 22 C -0.005 4.005 23 C -0.079 4.079 24 C -0.122 4.122 25 C -0.154 4.154 26 C -0.144 4.144 27 C -0.146 4.146 28 C -0.138 4.138 29 H 0.136 0.864 30 H 0.137 0.863 31 H 0.123 0.877 32 H 0.109 0.891 33 H 0.107 0.893 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.035 0.965 37 H 0.045 0.955 38 H 0.209 0.791 39 H 0.060 0.940 40 H 0.091 0.909 41 H 0.083 0.917 42 H 0.121 0.879 43 H 0.150 0.850 44 H 0.161 0.839 45 H 0.164 0.836 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 1.863 5.455 -26.862 27.473 hybrid contribution 0.074 -0.445 1.398 1.469 sum 1.937 5.010 -25.464 26.024 Atomic orbital electron populations 1.24191 0.94660 1.04001 0.96004 1.22444 0.96434 0.95672 1.03970 1.19386 0.96205 0.99926 0.88961 0.85543 1.20594 0.88119 0.75415 0.83823 1.90701 1.16701 1.51602 1.86529 1.48545 1.09351 1.71634 1.04842 1.22425 0.80070 1.03582 0.96040 1.22597 0.96521 1.02683 0.93664 1.22327 0.95902 0.99979 0.93330 0.90699 1.20642 0.93162 0.94818 0.87579 1.42456 1.45812 1.47026 1.03085 1.19572 1.16578 1.16909 0.84804 0.90847 1.25527 0.99288 0.99486 1.02250 1.69787 1.27560 1.29512 1.34871 0.85237 0.77045 0.77394 0.80228 1.20329 1.22091 1.20681 1.22078 0.95401 1.00713 0.82287 1.19397 0.96906 0.96359 0.95212 1.20971 0.95506 0.98745 0.96994 1.21363 0.99799 0.99650 0.94567 1.21473 0.98518 0.94549 0.99827 1.21439 0.95692 0.99619 0.97802 1.21296 1.00539 0.97495 0.94498 0.86433 0.86317 0.87731 0.89067 0.89316 0.90075 0.90579 0.96516 0.95465 0.79134 0.93953 0.90922 0.91654 0.87854 0.85027 0.83928 0.83559 0.84124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.79 12.51 67.78 0.85 -0.95 16 2 C -0.17 -2.77 6.96 25.64 0.18 -2.59 16 3 C -0.02 -0.47 2.21 -13.03 -0.03 -0.49 16 4 H 0.13 1.85 7.52 -2.39 -0.02 1.83 16 5 C 0.53 14.29 7.07 87.66 0.62 14.91 16 6 O -0.58 -20.12 15.34 -3.04 -0.05 -20.17 16 7 N -0.61 -15.46 3.32 -811.82 -2.70 -18.16 16 8 C 0.10 2.03 5.83 86.73 0.51 2.54 16 9 C -0.12 -3.05 6.28 31.79 0.20 -2.85 16 10 C -0.10 -2.96 3.06 -9.41 -0.03 -2.99 16 11 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 12 C 0.16 6.41 5.71 86.38 0.49 6.90 16 13 N -0.74 -36.71 5.50 -343.44 -1.89 -38.60 16 14 C -0.25 -13.64 9.99 84.03 0.84 -12.80 16 15 H 0.07 3.91 7.83 -2.91 -0.02 3.89 16 16 C -0.07 -4.14 5.50 84.86 0.47 -3.68 16 17 N -0.97 -58.06 13.06 21.65 0.28 -57.77 16 18 Si 0.97 45.68 29.55 68.60 2.03 47.71 16 19 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 20 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 21 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 22 C 0.12 3.38 6.37 86.85 0.55 3.93 16 23 C -0.08 -1.68 4.39 -19.87 -0.09 -1.77 16 24 C -0.10 -2.44 8.03 22.27 0.18 -2.26 16 25 C -0.14 -2.71 10.05 22.27 0.22 -2.49 16 26 C -0.13 -2.10 10.05 22.27 0.22 -1.88 16 27 C -0.13 -2.03 10.05 22.27 0.22 -1.81 16 28 C -0.12 -2.14 9.67 22.27 0.22 -1.93 16 29 H 0.12 1.17 8.06 -2.91 -0.02 1.14 16 30 H 0.12 1.00 7.83 -2.91 -0.02 0.97 16 31 H 0.10 1.94 8.05 -2.91 -0.02 1.91 16 32 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.09 1.59 5.54 -2.39 -0.01 1.58 16 34 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.08 2.04 7.97 -2.38 -0.02 2.02 16 36 H 0.02 0.67 8.14 -2.38 -0.02 0.66 16 37 H 0.03 1.05 8.04 -2.38 -0.02 1.03 16 38 H 0.38 19.56 7.63 -92.71 -0.71 18.85 16 39 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 40 H 0.07 2.03 8.04 -2.39 -0.02 2.01 16 41 H 0.06 2.01 8.04 -2.38 -0.02 1.99 16 42 H 0.10 2.61 7.97 -2.91 -0.02 2.59 16 43 H 0.13 2.15 8.06 -2.91 -0.02 2.13 16 44 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 45 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 46 H 0.14 1.79 7.95 -2.91 -0.02 1.77 16 Total: -1.00 -70.48 377.34 3.55 -66.93 By element: Atomic # 1 Polarization: 30.02 SS G_CDS: 0.25 Total: 30.27 kcal Atomic # 6 Polarization: -15.83 SS G_CDS: 5.63 Total: -10.20 kcal Atomic # 7 Polarization: -110.23 SS G_CDS: -4.30 Total: -114.53 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: -0.05 Total: -20.17 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -70.48 3.55 -66.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752961155.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.995 kcal (2) G-P(sol) polarization free energy of solvation -70.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds