Wall clock time and date at job start Tue Mar 31 2020 12:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50696 * 119.99686 * 2 1 4 4 H 1.08997 * 109.47507 * 359.97438 * 3 2 1 5 5 C 1.50710 * 109.46764 * 239.99550 * 3 2 1 6 6 O 1.21279 * 119.99738 * 240.00018 * 5 3 2 7 7 N 1.34774 * 119.99444 * 60.00796 * 5 3 2 8 8 C 1.46503 * 119.99487 * 180.02562 * 7 5 3 9 9 C 1.53003 * 109.46806 * 173.48626 * 8 7 5 10 10 H 1.08998 * 109.87626 * 59.46757 * 9 8 7 11 11 C 1.54327 * 109.87765 * 180.64068 * 9 8 7 12 12 C 1.55160 * 102.94185 * 141.61139 * 11 9 8 13 13 C 1.55133 * 101.48272 * 324.32979 * 12 11 9 14 14 N 1.47025 * 109.88205 * 298.44529 * 9 8 7 15 15 C 1.36933 * 125.64830 * 61.60633 * 14 9 8 16 16 H 1.08004 * 120.00026 * 321.84022 * 15 14 9 17 17 C 1.38809 * 119.99932 * 142.10589 * 15 14 9 18 18 N 1.31618 * 119.99928 * 164.25128 * 17 15 14 19 19 Si 1.86799 * 119.99836 * 344.24947 * 17 15 14 20 20 H 1.48504 * 109.46860 * 95.18373 * 19 17 15 21 21 H 1.48503 * 109.47141 * 215.17758 * 19 17 15 22 22 H 1.48493 * 109.47427 * 335.18420 * 19 17 15 23 23 C 1.50697 * 109.47152 * 120.00311 * 3 2 1 24 24 C 1.38241 * 120.00328 * 59.71909 * 23 3 2 25 25 C 1.38235 * 120.00085 * 179.74691 * 24 23 3 26 26 C 1.38239 * 119.99749 * 0.53094 * 25 24 23 27 27 C 1.38237 * 120.00044 * 359.74506 * 26 25 24 28 28 C 1.38230 * 119.99927 * 359.97438 * 27 26 25 29 29 H 1.07998 * 119.99955 * 179.97438 * 1 2 3 30 30 H 1.08001 * 119.99977 * 0.02562 * 1 2 3 31 31 H 1.08001 * 119.99977 * 179.97438 * 2 1 3 32 32 H 0.96998 * 120.00456 * 359.97438 * 7 5 3 33 33 H 1.09000 * 109.47496 * 53.48360 * 8 7 5 34 34 H 1.09005 * 109.46990 * 293.48232 * 8 7 5 35 35 H 1.09001 * 110.71666 * 259.96994 * 11 9 8 36 36 H 1.08997 * 110.72466 * 23.06618 * 11 9 8 37 37 H 1.08993 * 111.00545 * 82.56813 * 12 11 9 38 38 H 1.08998 * 111.00450 * 206.42610 * 12 11 9 39 39 H 1.09005 * 110.49374 * 278.45290 * 13 12 11 40 40 H 1.08996 * 110.34134 * 156.06645 * 13 12 11 41 41 H 0.97001 * 120.00139 * 180.02562 * 18 17 15 42 42 H 1.07995 * 119.99748 * 0.02562 * 24 23 3 43 43 H 1.07994 * 120.00153 * 180.29648 * 25 24 23 44 44 H 1.07998 * 119.99455 * 179.77025 * 26 25 24 45 45 H 1.08003 * 119.99786 * 180.02562 * 27 26 25 46 46 H 1.07997 * 119.99795 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 1 1.3551 2.1336 -0.0005 5 6 2.9299 1.3849 -1.2305 6 8 4.1325 1.4957 -1.1191 7 7 2.3683 1.3331 -2.4546 8 6 3.2106 1.4101 -3.6507 9 6 2.3535 1.1670 -4.8946 10 1 1.5636 1.9159 -4.9525 11 6 3.2349 1.2300 -6.1598 12 6 2.6457 0.1042 -7.0502 13 6 2.2594 -0.9589 -5.9885 14 7 1.7636 -0.1787 -4.8401 15 6 0.9013 -0.6338 -3.8787 16 1 1.0404 -0.3439 -2.8476 17 6 -0.1483 -1.4721 -4.2284 18 7 -0.7833 -2.1543 -3.2991 19 14 -0.6596 -1.6318 -6.0179 20 1 0.0113 -2.8114 -6.6210 21 1 -2.1323 -1.8051 -6.0984 22 1 -0.2643 -0.4060 -6.7570 23 6 2.9299 1.3850 1.2304 24 6 3.9053 0.4308 1.4521 25 6 4.7035 0.5070 2.5781 26 6 4.5191 1.5312 3.4880 27 6 3.5399 2.4822 3.2692 28 6 2.7455 2.4092 2.1403 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.4065 1.2442 -2.5436 33 1 3.9921 0.6524 -3.5942 34 1 3.6665 2.3984 -3.7111 35 1 3.1381 2.1992 -6.6492 36 1 4.2771 1.0259 -5.9144 37 1 1.7686 0.4548 -7.5940 38 1 3.3982 -0.2861 -7.7354 39 1 3.1320 -1.5453 -5.7005 40 1 1.4739 -1.6098 -6.3724 41 1 -1.5166 -2.7404 -3.5435 42 1 4.0466 -0.3717 0.7433 43 1 5.4687 -0.2357 2.7489 44 1 5.1403 1.5887 4.3696 45 1 3.3960 3.2826 3.9799 46 1 1.9803 3.1519 1.9696 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753119196.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:31 Heat of formation + Delta-G solvation = 38.043397 kcal Electronic energy + Delta-G solvation = -26665.882323 eV Core-core repulsion = 23135.642429 eV Total energy + Delta-G solvation = -3530.239894 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -39.97497 -38.61428 -37.72463 -34.73029 -33.92656 -32.66834 -30.90246 -30.66661 -29.99517 -29.48127 -26.90532 -24.86737 -23.63540 -22.52255 -21.55957 -20.90348 -20.08841 -19.73787 -19.01152 -17.38406 -16.79170 -16.27057 -16.08551 -15.46266 -15.01836 -14.82849 -14.65418 -14.28314 -13.90972 -13.59480 -13.29653 -13.21651 -13.02524 -12.74505 -12.50973 -12.43193 -12.15359 -12.02076 -11.91162 -11.34337 -11.28097 -11.15603 -10.96784 -10.88741 -10.69617 -10.52715 -10.47908 -10.20976 -9.91274 -9.67380 -9.52272 -8.79944 -8.66707 -8.62644 -8.50184 -8.30665 -6.82750 -6.05003 -3.52620 1.51010 1.61443 2.71133 3.21472 3.27457 3.41403 3.46344 3.75343 4.10177 4.46959 4.89411 4.95041 4.97354 5.11458 5.14168 5.23458 5.31577 5.34150 5.38534 5.42970 5.44476 5.54487 5.68381 5.72123 5.84314 5.89565 5.94065 6.09904 6.10489 6.14000 6.23074 6.24585 6.32622 6.38666 6.46159 6.56386 6.59994 6.67888 6.82834 6.83362 6.85271 7.04412 7.11838 7.14308 7.21618 7.86593 8.18081 8.28534 8.74967 8.82671 9.59477 10.19812 11.08152 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.017798 B = 0.004060 C = 0.003526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.863232 B = 6894.098176 C = 7939.885807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.155 4.155 3 C -0.038 4.038 4 H 0.100 0.900 5 C 0.518 3.482 6 O -0.552 6.552 7 N -0.704 5.704 8 C 0.117 3.883 9 C 0.143 3.857 10 H 0.047 0.953 11 C -0.121 4.121 12 C -0.136 4.136 13 C 0.118 3.882 14 N -0.601 5.601 15 C -0.260 4.260 16 H 0.097 0.903 17 C 0.039 3.961 18 N -0.898 5.898 19 Si 0.887 3.113 20 H -0.289 1.289 21 H -0.304 1.304 22 H -0.268 1.268 23 C -0.051 4.051 24 C -0.079 4.079 25 C -0.124 4.124 26 C -0.126 4.126 27 C -0.127 4.127 28 C -0.115 4.115 29 H 0.110 0.890 30 H 0.091 0.909 31 H 0.113 0.887 32 H 0.414 0.586 33 H 0.063 0.937 34 H 0.051 0.949 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.065 0.935 39 H 0.030 0.970 40 H 0.040 0.960 41 H 0.263 0.737 42 H 0.120 0.880 43 H 0.118 0.882 44 H 0.116 0.884 45 H 0.118 0.882 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.547 7.912 5.901 11.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.173 4.173 3 C -0.060 4.060 4 H 0.118 0.882 5 C 0.303 3.697 6 O -0.431 6.431 7 N -0.357 5.357 8 C -0.009 4.009 9 C 0.036 3.964 10 H 0.065 0.935 11 C -0.160 4.160 12 C -0.174 4.174 13 C -0.006 4.006 14 N -0.328 5.328 15 C -0.388 4.388 16 H 0.114 0.886 17 C -0.162 4.162 18 N -0.539 5.539 19 Si 0.719 3.281 20 H -0.217 1.217 21 H -0.233 1.233 22 H -0.193 1.193 23 C -0.051 4.051 24 C -0.097 4.097 25 C -0.142 4.142 26 C -0.144 4.144 27 C -0.145 4.145 28 C -0.133 4.133 29 H 0.128 0.872 30 H 0.109 0.891 31 H 0.131 0.869 32 H 0.254 0.746 33 H 0.081 0.919 34 H 0.069 0.931 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.048 0.952 40 H 0.058 0.942 41 H 0.073 0.927 42 H 0.138 0.862 43 H 0.136 0.864 44 H 0.134 0.866 45 H 0.136 0.864 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 6.174 7.846 6.063 11.681 hybrid contribution -0.841 -0.408 -1.173 1.500 sum 5.332 7.438 4.890 10.377 Atomic orbital electron populations 1.23846 0.95346 1.02276 0.97009 1.22366 0.95770 0.95892 1.03262 1.19452 0.96476 0.98799 0.91234 0.88211 1.20235 0.88406 0.76380 0.84642 1.90652 1.14948 1.50586 1.86937 1.46230 1.12350 1.72318 1.04806 1.21900 0.94139 0.99766 0.85121 1.21286 0.93786 0.89755 0.91574 0.93494 1.22485 0.99127 0.98619 0.95735 1.22814 1.00129 0.97002 0.97482 1.21920 0.96732 0.93646 0.88307 1.44675 1.52666 1.06615 1.28804 1.18786 1.03202 1.28353 0.88468 0.88571 1.25462 0.95802 0.98005 0.96971 1.69775 1.23856 1.27637 1.32640 0.86729 0.76192 0.78154 0.87032 1.21718 1.23278 1.19298 1.19290 0.96133 0.95190 0.94490 1.20954 0.94125 0.98313 0.96347 1.21093 0.99607 0.98690 0.94790 1.21065 0.98580 0.95435 0.99361 1.20998 0.96577 0.99208 0.97681 1.20973 0.99882 0.97857 0.94614 0.87178 0.89067 0.86877 0.74601 0.91882 0.93116 0.91505 0.91312 0.91583 0.91647 0.95202 0.94201 0.92701 0.86220 0.86367 0.86570 0.86428 0.86352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.39 14.32 29.01 0.42 -1.97 16 2 C -0.15 -2.57 8.09 -36.03 -0.29 -2.86 16 3 C -0.04 -0.61 2.67 -94.07 -0.25 -0.86 16 4 H 0.10 1.38 7.52 -51.93 -0.39 0.99 16 5 C 0.52 9.63 7.02 -10.98 -0.08 9.55 16 6 O -0.55 -11.67 15.11 5.56 0.08 -11.59 16 7 N -0.70 -13.07 4.25 -60.29 -0.26 -13.33 16 8 C 0.12 2.11 5.19 -4.04 -0.02 2.09 16 9 C 0.14 2.62 3.34 -66.95 -0.22 2.40 16 10 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 11 C -0.12 -1.84 6.47 -24.89 -0.16 -2.00 16 12 C -0.14 -2.24 7.10 -24.46 -0.17 -2.41 16 13 C 0.12 2.45 6.18 -2.41 -0.01 2.43 16 14 N -0.60 -13.33 2.64 -162.43 -0.43 -13.75 16 15 C -0.26 -6.57 9.41 -15.06 -0.14 -6.71 16 16 H 0.10 2.45 5.33 -52.48 -0.28 2.17 16 17 C 0.04 1.04 5.46 -17.43 -0.10 0.95 16 18 N -0.90 -25.13 13.97 55.49 0.78 -24.36 16 19 Si 0.89 21.47 24.81 -169.99 -4.22 17.25 16 20 H -0.29 -7.02 6.89 56.52 0.39 -6.63 16 21 H -0.30 -7.55 7.11 56.52 0.40 -7.14 16 22 H -0.27 -6.29 6.84 56.52 0.39 -5.91 16 23 C -0.05 -0.78 4.38 -104.62 -0.46 -1.24 16 24 C -0.08 -1.25 8.04 -39.58 -0.32 -1.57 16 25 C -0.12 -1.68 10.05 -39.58 -0.40 -2.08 16 26 C -0.13 -1.54 10.05 -39.58 -0.40 -1.94 16 27 C -0.13 -1.54 10.05 -39.58 -0.40 -1.94 16 28 C -0.12 -1.55 9.67 -39.59 -0.38 -1.93 16 29 H 0.11 1.90 8.06 -52.49 -0.42 1.48 16 30 H 0.09 1.29 7.83 -52.49 -0.41 0.88 16 31 H 0.11 2.02 8.00 -52.49 -0.42 1.60 16 32 H 0.41 7.93 5.94 -40.82 -0.24 7.68 16 33 H 0.06 1.26 8.11 -51.93 -0.42 0.83 16 34 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.07 0.98 7.85 -51.93 -0.41 0.57 16 37 H 0.07 1.12 7.99 -51.93 -0.42 0.70 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.04 0.90 3.36 -51.93 -0.17 0.72 16 41 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 42 H 0.12 1.99 7.95 -52.49 -0.42 1.57 16 43 H 0.12 1.35 8.06 -52.49 -0.42 0.93 16 44 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 45 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 46 H 0.12 1.34 7.95 -52.49 -0.42 0.92 16 LS Contribution 368.19 15.07 5.55 5.55 Total: -1.00 -29.92 368.19 -8.85 -38.77 By element: Atomic # 1 Polarization: 18.50 SS G_CDS: -6.96 Total: 11.54 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: -3.39 Total: -10.08 kcal Atomic # 7 Polarization: -51.53 SS G_CDS: 0.09 Total: -51.44 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: 0.08 Total: -11.59 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.22 Total: 17.25 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -29.92 -8.85 -38.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753119196.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.815 kcal (2) G-P(sol) polarization free energy of solvation -29.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds