Wall clock time and date at job start Tue Mar 31 2020 12:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50696 * 119.99686 * 2 1 4 4 H 1.08997 * 109.47507 * 359.97438 * 3 2 1 5 5 C 1.50710 * 109.46764 * 239.99550 * 3 2 1 6 6 O 1.21279 * 119.99738 * 240.00018 * 5 3 2 7 7 N 1.34774 * 119.99444 * 60.00796 * 5 3 2 8 8 C 1.46503 * 119.99487 * 180.02562 * 7 5 3 9 9 C 1.53003 * 109.46806 * 173.48626 * 8 7 5 10 10 H 1.08998 * 109.87626 * 59.46757 * 9 8 7 11 11 C 1.54327 * 109.87765 * 180.64068 * 9 8 7 12 12 C 1.55160 * 102.94185 * 141.61139 * 11 9 8 13 13 C 1.55133 * 101.48272 * 324.32979 * 12 11 9 14 14 N 1.47025 * 109.88205 * 298.44529 * 9 8 7 15 15 C 1.36933 * 125.64830 * 61.60633 * 14 9 8 16 16 H 1.08004 * 120.00026 * 321.84022 * 15 14 9 17 17 C 1.38809 * 119.99932 * 142.10589 * 15 14 9 18 18 N 1.31618 * 119.99928 * 164.25128 * 17 15 14 19 19 Si 1.86799 * 119.99836 * 344.24947 * 17 15 14 20 20 H 1.48504 * 109.46860 * 95.18373 * 19 17 15 21 21 H 1.48503 * 109.47141 * 215.17758 * 19 17 15 22 22 H 1.48493 * 109.47427 * 335.18420 * 19 17 15 23 23 C 1.50697 * 109.47152 * 120.00311 * 3 2 1 24 24 C 1.38241 * 120.00328 * 59.71909 * 23 3 2 25 25 C 1.38235 * 120.00085 * 179.74691 * 24 23 3 26 26 C 1.38239 * 119.99749 * 0.53094 * 25 24 23 27 27 C 1.38237 * 120.00044 * 359.74506 * 26 25 24 28 28 C 1.38230 * 119.99927 * 359.97438 * 27 26 25 29 29 H 1.07998 * 119.99955 * 179.97438 * 1 2 3 30 30 H 1.08001 * 119.99977 * 0.02562 * 1 2 3 31 31 H 1.08001 * 119.99977 * 179.97438 * 2 1 3 32 32 H 0.96998 * 120.00456 * 359.97438 * 7 5 3 33 33 H 1.09000 * 109.47496 * 53.48360 * 8 7 5 34 34 H 1.09005 * 109.46990 * 293.48232 * 8 7 5 35 35 H 1.09001 * 110.71666 * 259.96994 * 11 9 8 36 36 H 1.08997 * 110.72466 * 23.06618 * 11 9 8 37 37 H 1.08993 * 111.00545 * 82.56813 * 12 11 9 38 38 H 1.08998 * 111.00450 * 206.42610 * 12 11 9 39 39 H 1.09005 * 110.49374 * 278.45290 * 13 12 11 40 40 H 1.08996 * 110.34134 * 156.06645 * 13 12 11 41 41 H 0.97001 * 120.00139 * 180.02562 * 18 17 15 42 42 H 1.07995 * 119.99748 * 0.02562 * 24 23 3 43 43 H 1.07994 * 120.00153 * 180.29648 * 25 24 23 44 44 H 1.07998 * 119.99455 * 179.77025 * 26 25 24 45 45 H 1.08003 * 119.99786 * 180.02562 * 27 26 25 46 46 H 1.07997 * 119.99795 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 1 1.3551 2.1336 -0.0005 5 6 2.9299 1.3849 -1.2305 6 8 4.1325 1.4957 -1.1191 7 7 2.3683 1.3331 -2.4546 8 6 3.2106 1.4101 -3.6507 9 6 2.3535 1.1670 -4.8946 10 1 1.5636 1.9159 -4.9525 11 6 3.2349 1.2300 -6.1598 12 6 2.6457 0.1042 -7.0502 13 6 2.2594 -0.9589 -5.9885 14 7 1.7636 -0.1787 -4.8401 15 6 0.9013 -0.6338 -3.8787 16 1 1.0404 -0.3439 -2.8476 17 6 -0.1483 -1.4721 -4.2284 18 7 -0.7833 -2.1543 -3.2991 19 14 -0.6596 -1.6318 -6.0179 20 1 0.0113 -2.8114 -6.6210 21 1 -2.1323 -1.8051 -6.0984 22 1 -0.2643 -0.4060 -6.7570 23 6 2.9299 1.3850 1.2304 24 6 3.9053 0.4308 1.4521 25 6 4.7035 0.5070 2.5781 26 6 4.5191 1.5312 3.4880 27 6 3.5399 2.4822 3.2692 28 6 2.7455 2.4092 2.1403 29 1 -0.5400 -0.9353 -0.0004 30 1 -0.5400 0.9353 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.4065 1.2442 -2.5436 33 1 3.9921 0.6524 -3.5942 34 1 3.6665 2.3984 -3.7111 35 1 3.1381 2.1992 -6.6492 36 1 4.2771 1.0259 -5.9144 37 1 1.7686 0.4548 -7.5940 38 1 3.3982 -0.2861 -7.7354 39 1 3.1320 -1.5453 -5.7005 40 1 1.4739 -1.6098 -6.3724 41 1 -1.5166 -2.7404 -3.5435 42 1 4.0466 -0.3717 0.7433 43 1 5.4687 -0.2357 2.7489 44 1 5.1403 1.5887 4.3696 45 1 3.3960 3.2826 3.9799 46 1 1.9803 3.1519 1.9696 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753119196.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:02:30 Heat of formation + Delta-G solvation = 21.602474 kcal Electronic energy + Delta-G solvation = -26666.595254 eV Core-core repulsion = 23135.642429 eV Total energy + Delta-G solvation = -3530.952826 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.31369 -39.91609 -39.14723 -36.05916 -35.41546 -34.55817 -32.04461 -31.72896 -31.71004 -30.95378 -28.17474 -26.47920 -25.28027 -23.57476 -22.80433 -22.25227 -21.52438 -21.26513 -20.39942 -19.06511 -17.92453 -17.90047 -17.61295 -16.83729 -16.44866 -16.15655 -16.03225 -15.63516 -15.25003 -15.15532 -14.79487 -14.54901 -14.35624 -14.17129 -13.97822 -13.72843 -13.59429 -13.44338 -13.19830 -13.02431 -12.92077 -12.58972 -12.30599 -12.25221 -12.06240 -11.89346 -11.74480 -11.69455 -11.51525 -11.39531 -11.07006 -10.62736 -10.15088 -9.86363 -9.73054 -9.57656 -8.65593 -8.08459 -5.52427 0.45545 0.57320 1.32908 1.35160 1.42834 1.52905 1.76005 2.39124 2.50251 2.98699 3.13136 3.39407 3.78725 3.79566 3.92961 4.00125 4.05436 4.06345 4.16827 4.20888 4.22104 4.31897 4.34699 4.49447 4.53870 4.68751 4.69379 4.74760 4.79924 4.86899 4.99800 5.00171 5.08259 5.12726 5.14975 5.20388 5.32131 5.48367 5.58646 5.61670 5.65723 5.67732 5.74753 5.86332 5.97391 6.16964 6.31566 6.67716 6.88792 7.32315 7.62143 8.29451 9.06728 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.017798 B = 0.004060 C = 0.003526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.863232 B = 6894.098176 C = 7939.885807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.159 4.159 3 C -0.028 4.028 4 H 0.124 0.876 5 C 0.515 3.485 6 O -0.580 6.580 7 N -0.706 5.706 8 C 0.121 3.879 9 C 0.140 3.860 10 H 0.051 0.949 11 C -0.111 4.111 12 C -0.125 4.125 13 C 0.105 3.895 14 N -0.618 5.618 15 C -0.244 4.244 16 H 0.087 0.913 17 C -0.013 4.013 18 N -0.937 5.937 19 Si 0.937 3.063 20 H -0.295 1.295 21 H -0.316 1.316 22 H -0.254 1.254 23 C -0.072 4.072 24 C -0.107 4.107 25 C -0.134 4.134 26 C -0.124 4.124 27 C -0.124 4.124 28 C -0.122 4.122 29 H 0.093 0.907 30 H 0.117 0.883 31 H 0.088 0.912 32 H 0.411 0.589 33 H 0.040 0.960 34 H 0.072 0.928 35 H 0.100 0.900 36 H 0.080 0.920 37 H 0.065 0.935 38 H 0.096 0.904 39 H 0.025 0.975 40 H 0.021 0.979 41 H 0.258 0.742 42 H 0.093 0.907 43 H 0.132 0.868 44 H 0.148 0.852 45 H 0.152 0.848 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.469 10.659 5.721 13.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.177 4.177 3 C -0.049 4.049 4 H 0.142 0.858 5 C 0.301 3.699 6 O -0.461 6.461 7 N -0.358 5.358 8 C -0.005 4.005 9 C 0.034 3.966 10 H 0.069 0.931 11 C -0.149 4.149 12 C -0.164 4.164 13 C -0.019 4.019 14 N -0.344 5.344 15 C -0.373 4.373 16 H 0.104 0.896 17 C -0.210 4.210 18 N -0.581 5.581 19 Si 0.769 3.231 20 H -0.223 1.223 21 H -0.246 1.246 22 H -0.178 1.178 23 C -0.073 4.073 24 C -0.125 4.125 25 C -0.152 4.152 26 C -0.142 4.142 27 C -0.142 4.142 28 C -0.139 4.139 29 H 0.111 0.889 30 H 0.136 0.864 31 H 0.106 0.894 32 H 0.251 0.749 33 H 0.059 0.941 34 H 0.090 0.910 35 H 0.118 0.882 36 H 0.099 0.901 37 H 0.084 0.916 38 H 0.115 0.885 39 H 0.043 0.957 40 H 0.039 0.961 41 H 0.067 0.933 42 H 0.111 0.889 43 H 0.150 0.850 44 H 0.166 0.834 45 H 0.169 0.831 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 7.121 10.617 5.853 14.060 hybrid contribution -1.018 -1.265 -1.034 1.924 sum 6.103 9.352 4.819 12.163 Atomic orbital electron populations 1.23901 0.95120 1.02721 0.96337 1.22241 0.95900 0.95684 1.03913 1.19390 0.96391 0.98720 0.90354 0.85791 1.20720 0.88354 0.75468 0.85320 1.90626 1.16242 1.51884 1.87364 1.46297 1.12174 1.72109 1.05218 1.21872 0.93524 1.00086 0.85000 1.21486 0.94268 0.87577 0.93268 0.93122 1.22514 0.98847 0.99912 0.93637 1.22779 1.01070 0.95777 0.96733 1.22078 0.95838 0.94803 0.89162 1.44861 1.52264 1.08742 1.28582 1.18917 1.02674 1.26599 0.89101 0.89596 1.25965 0.96676 0.98839 0.99531 1.69889 1.24940 1.29295 1.33984 0.85918 0.74832 0.78298 0.84039 1.22336 1.24564 1.17791 1.19369 0.96559 0.96318 0.95017 1.20932 0.95864 0.98476 0.97240 1.21343 0.99626 0.99807 0.94459 1.21472 0.98635 0.94405 0.99703 1.21444 0.95522 0.99691 0.97535 1.21292 1.00625 0.97504 0.94519 0.88880 0.86442 0.89404 0.74942 0.94128 0.91036 0.88178 0.90128 0.91625 0.88542 0.95669 0.96145 0.93274 0.88880 0.84976 0.83416 0.83058 0.84101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.77 14.32 67.78 0.97 -3.80 16 2 C -0.16 -5.52 8.09 25.64 0.21 -5.31 16 3 C -0.03 -0.88 2.67 -13.03 -0.03 -0.91 16 4 H 0.12 3.27 7.52 -2.39 -0.02 3.25 16 5 C 0.51 19.39 7.02 87.66 0.61 20.00 16 6 O -0.58 -24.98 15.11 -3.03 -0.05 -25.03 16 7 N -0.71 -26.24 4.25 -463.04 -1.97 -28.21 16 8 C 0.12 4.26 5.19 86.38 0.45 4.71 16 9 C 0.14 4.87 3.34 45.34 0.15 5.02 16 10 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 11 C -0.11 -2.96 6.47 31.78 0.21 -2.75 16 12 C -0.13 -3.71 7.10 32.07 0.23 -3.48 16 13 C 0.11 4.23 6.18 86.93 0.54 4.77 16 14 N -0.62 -26.99 2.64 -667.80 -1.76 -28.75 16 15 C -0.24 -12.47 9.41 84.03 0.79 -11.68 16 16 H 0.09 4.51 5.33 -2.91 -0.02 4.50 16 17 C -0.01 -0.70 5.46 84.86 0.46 -0.24 16 18 N -0.94 -54.29 13.97 21.65 0.30 -53.99 16 19 Si 0.94 44.93 24.81 68.60 1.70 46.63 16 20 H -0.30 -14.22 6.89 99.48 0.69 -13.53 16 21 H -0.32 -15.59 7.11 99.48 0.71 -14.88 16 22 H -0.25 -11.37 6.84 99.48 0.68 -10.69 16 23 C -0.07 -2.23 4.38 -19.87 -0.09 -2.31 16 24 C -0.11 -3.48 8.04 22.27 0.18 -3.30 16 25 C -0.13 -3.59 10.05 22.27 0.22 -3.37 16 26 C -0.12 -2.72 10.05 22.27 0.22 -2.50 16 27 C -0.12 -2.64 10.05 22.27 0.22 -2.41 16 28 C -0.12 -3.02 9.67 22.27 0.22 -2.81 16 29 H 0.09 3.39 8.06 -2.91 -0.02 3.37 16 30 H 0.12 3.22 7.83 -2.91 -0.02 3.20 16 31 H 0.09 3.45 8.00 -2.91 -0.02 3.42 16 32 H 0.41 15.80 5.94 -92.71 -0.55 15.25 16 33 H 0.04 1.61 8.11 -2.39 -0.02 1.59 16 34 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 35 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.08 1.99 7.85 -2.39 -0.02 1.97 16 37 H 0.07 1.97 7.99 -2.39 -0.02 1.95 16 38 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 39 H 0.03 1.03 8.14 -2.38 -0.02 1.01 16 40 H 0.02 0.91 3.36 -2.39 -0.01 0.90 16 41 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 42 H 0.09 3.40 7.95 -2.91 -0.02 3.38 16 43 H 0.13 2.99 8.06 -2.91 -0.02 2.96 16 44 H 0.15 2.26 8.06 -2.91 -0.02 2.23 16 45 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 46 H 0.14 2.77 7.95 -2.91 -0.02 2.74 16 Total: -1.00 -67.04 368.19 4.16 -62.89 By element: Atomic # 1 Polarization: 36.45 SS G_CDS: 0.37 Total: 36.82 kcal Atomic # 6 Polarization: -15.93 SS G_CDS: 5.56 Total: -10.36 kcal Atomic # 7 Polarization: -107.52 SS G_CDS: -3.43 Total: -110.95 kcal Atomic # 8 Polarization: -24.98 SS G_CDS: -0.05 Total: -25.03 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 1.70 Total: 46.63 kcal Total: -67.04 4.16 -62.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753119196.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.489 kcal (2) G-P(sol) polarization free energy of solvation -67.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds