Wall clock time and date at job start Tue Mar 31 2020 10:40:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.47093 * 2 1 4 4 C 1.52994 * 109.46864 * 186.43901 * 3 2 1 5 5 C 1.53008 * 109.47383 * 65.00580 * 4 3 2 6 6 C 1.52995 * 109.46992 * 66.44219 * 3 2 1 7 7 N 1.46904 * 109.47108 * 293.47947 * 6 3 2 8 8 C 1.47483 * 110.99922 * 265.97020 * 7 6 3 9 9 C 1.53509 * 87.93330 * 221.29642 * 8 7 6 10 10 N 1.46498 * 114.17215 * 139.67089 * 9 8 7 11 11 C 1.46498 * 120.00142 * 326.16308 * 10 9 8 12 12 C 1.34775 * 120.00007 * 146.15890 * 10 9 8 13 13 O 1.21284 * 119.99865 * 0.02562 * 12 10 9 14 14 C 1.50704 * 119.99963 * 180.02562 * 12 10 9 15 15 S 1.81003 * 109.47141 * 179.97438 * 14 12 10 16 16 C 1.76192 * 99.99939 * 179.97438 * 15 14 12 17 17 H 1.07997 * 120.00020 * 0.02562 * 16 15 14 18 18 C 1.38800 * 120.00124 * 179.97438 * 16 15 14 19 19 N 1.31630 * 119.99873 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00211 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46751 * 90.00318 * 20 18 16 22 22 H 1.48499 * 109.47021 * 210.00387 * 20 18 16 23 23 H 1.48501 * 109.47148 * 330.00527 * 20 18 16 24 24 C 1.47484 * 111.00064 * 170.00214 * 7 6 3 25 25 H 1.09003 * 109.46734 * 171.58817 * 1 2 3 26 26 H 1.09000 * 109.46883 * 291.58688 * 1 2 3 27 27 H 1.08996 * 109.46885 * 51.58665 * 1 2 3 28 28 H 1.09009 * 109.46639 * 240.00367 * 2 1 3 29 29 H 1.09000 * 109.47039 * 120.00516 * 2 1 3 30 30 H 1.08995 * 109.47226 * 306.44071 * 3 2 1 31 31 H 1.09010 * 109.47082 * 185.00012 * 4 3 2 32 32 H 1.08997 * 109.47645 * 305.00182 * 4 3 2 33 33 H 1.08997 * 109.47055 * 59.99240 * 5 4 3 34 34 H 1.08994 * 109.47354 * 179.97438 * 5 4 3 35 35 H 1.09001 * 109.46617 * 299.99490 * 5 4 3 36 36 H 1.09002 * 109.47533 * 53.47468 * 6 3 2 37 37 H 1.09002 * 109.47173 * 173.47979 * 6 3 2 38 38 H 1.08998 * 113.47473 * 336.06245 * 8 7 6 39 39 H 1.09006 * 113.47362 * 106.52927 * 8 7 6 40 40 H 1.09000 * 114.16832 * 272.37977 * 9 8 7 41 41 H 1.08994 * 109.47299 * 89.99470 * 11 10 9 42 42 H 1.08995 * 109.47198 * 209.99880 * 11 10 9 43 43 H 1.09008 * 109.46871 * 329.99506 * 11 10 9 44 44 H 1.08993 * 109.46916 * 299.99848 * 14 12 10 45 45 H 1.08997 * 109.46774 * 60.00174 * 14 12 10 46 46 H 0.96998 * 119.99975 * 179.97438 * 19 18 16 47 47 H 1.08997 * 113.47233 * 253.46784 * 24 7 6 48 48 H 1.08998 * 113.47777 * 23.93448 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5614 1.4455 -0.1618 5 6 3.9292 0.8863 -1.5377 6 6 1.6665 2.1155 1.3222 7 7 0.2063 2.2530 1.4063 8 6 -0.2288 3.5755 0.9197 9 6 -1.2199 3.6187 2.0912 10 7 -1.3315 4.9301 2.7345 11 6 -0.1581 5.8022 2.8283 12 6 -2.5136 5.3343 3.2401 13 8 -3.4849 4.6122 3.1628 14 6 -2.6285 6.6836 3.9014 15 16 -4.3279 6.9331 4.4722 16 6 -4.1793 8.5382 5.1835 17 1 -3.2282 9.0496 5.1682 18 6 -5.2847 9.1457 5.7626 19 7 -6.4440 8.5226 5.7809 20 14 -5.1270 10.8472 6.5174 21 1 -5.4137 11.8752 5.4847 22 1 -6.0951 10.9846 7.6350 23 1 -3.7467 11.0343 7.0322 24 6 -0.2078 2.6760 2.7571 25 1 -0.3633 -1.0167 -0.1503 26 1 -0.3633 0.3781 0.9556 27 1 -0.3633 0.6385 -0.8052 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.5857 1.9885 -0.8267 31 1 3.9343 2.4660 -0.0729 32 1 4.0106 0.8257 0.6142 33 1 3.4800 1.5060 -2.3137 34 1 5.0130 0.8888 -1.6531 35 1 3.5564 -0.1342 -1.6265 36 1 2.0224 1.5065 2.1532 37 1 2.1278 3.1019 1.3709 38 1 0.5481 4.3375 0.9799 39 1 -0.7120 3.5414 -0.0568 40 1 -2.1845 3.1584 1.8769 41 1 -0.1092 6.4416 1.9469 42 1 -0.2358 6.4209 3.7222 43 1 0.7439 5.1928 2.8855 44 1 -1.9486 6.7304 4.7519 45 1 -2.3683 7.4627 3.1848 46 1 -7.2165 8.9470 6.1859 47 1 -0.6731 1.8795 3.3378 48 1 0.5748 3.1980 3.3077 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754568540.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:04 Heat of formation + Delta-G solvation = -6.459335 kcal Electronic energy + Delta-G solvation = -24153.808418 eV Core-core repulsion = 20757.082692 eV Total energy + Delta-G solvation = -3396.725726 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.98256 -38.88270 -37.17447 -34.73795 -32.43731 -31.95686 -30.57471 -29.00024 -27.21884 -26.43308 -25.94176 -25.46658 -23.13895 -22.74565 -20.33962 -20.19922 -19.03367 -17.71169 -17.08199 -16.35671 -16.21214 -15.65296 -15.14566 -14.81574 -14.75997 -14.55901 -14.46716 -14.03941 -13.50106 -13.40801 -12.99468 -12.92504 -12.89995 -12.65679 -12.47875 -12.30690 -12.26443 -12.19481 -11.95238 -11.66763 -11.36759 -11.20301 -11.07488 -11.03436 -11.00843 -10.82536 -10.76303 -10.60209 -10.48200 -9.81994 -9.43120 -9.07472 -8.93254 -8.55341 -8.23687 -6.51159 -6.22402 -3.93140 2.83392 2.98430 3.21483 3.23635 3.29110 3.52669 3.83224 4.19215 4.28999 4.41097 4.51093 4.55355 4.72217 4.85220 4.91037 4.98162 5.00116 5.08929 5.12622 5.13722 5.20524 5.21035 5.32063 5.33649 5.37505 5.47146 5.56430 5.57948 5.60704 5.63559 5.64228 5.65555 5.75552 5.86935 5.88018 5.97097 5.98645 6.02568 6.10717 6.10948 6.24294 6.54479 6.60054 6.78340 7.48324 7.58657 8.34195 8.51590 9.22783 10.84985 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.038247 B = 0.002200 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.911457 B =12721.934423 C =13222.406990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.110 4.110 3 C -0.080 4.080 4 C -0.121 4.121 5 C -0.153 4.153 6 C 0.026 3.974 7 N -0.456 5.456 8 C -0.015 4.015 9 C 0.125 3.875 10 N -0.614 5.614 11 C 0.079 3.921 12 C 0.535 3.465 13 O -0.512 6.512 14 C -0.150 4.150 15 S -0.061 6.061 16 C -0.535 4.535 17 H 0.072 0.928 18 C 0.073 3.927 19 N -0.867 5.867 20 Si 0.919 3.081 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.272 1.272 24 C -0.020 4.020 25 H 0.034 0.966 26 H 0.089 0.911 27 H 0.046 0.954 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.053 0.947 34 H 0.051 0.949 35 H 0.057 0.943 36 H 0.072 0.928 37 H 0.044 0.956 38 H 0.074 0.926 39 H 0.089 0.911 40 H 0.131 0.869 41 H 0.056 0.944 42 H 0.078 0.922 43 H 0.063 0.937 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.268 0.732 47 H 0.091 0.909 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.600 -13.017 -11.487 27.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.147 4.147 3 C -0.099 4.099 4 C -0.159 4.159 5 C -0.210 4.210 6 C -0.103 4.103 7 N -0.178 5.178 8 C -0.145 4.145 9 C 0.020 3.980 10 N -0.350 5.350 11 C -0.065 4.065 12 C 0.323 3.677 13 O -0.386 6.386 14 C -0.301 4.301 15 S 0.166 5.834 16 C -0.684 4.684 17 H 0.090 0.910 18 C -0.136 4.136 19 N -0.502 5.502 20 Si 0.745 3.255 21 H -0.203 1.203 22 H -0.207 1.207 23 H -0.197 1.197 24 C -0.150 4.150 25 H 0.053 0.947 26 H 0.108 0.892 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.091 0.909 37 H 0.062 0.938 38 H 0.092 0.908 39 H 0.108 0.892 40 H 0.149 0.851 41 H 0.075 0.925 42 H 0.097 0.903 43 H 0.082 0.918 44 H 0.108 0.892 45 H 0.108 0.892 46 H 0.078 0.922 47 H 0.109 0.891 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 19.728 -14.701 -11.839 27.304 hybrid contribution 1.903 2.711 0.881 3.427 sum 21.631 -11.990 -10.957 27.050 Atomic orbital electron populations 1.21948 0.94768 0.99615 1.04494 1.21502 0.97160 0.95138 1.00915 1.21158 0.94641 0.97037 0.97043 1.21556 0.95538 1.01032 0.97745 1.21809 1.00894 1.01362 0.96928 1.22762 0.89074 0.99775 0.98647 1.69057 1.13071 1.26276 1.09416 1.24442 0.98337 0.91351 1.00341 1.22575 0.99717 0.83484 0.92211 1.47811 1.10213 1.17416 1.59560 1.21739 0.87840 0.94224 1.02657 1.20381 0.81776 0.88133 0.77385 1.90700 1.36368 1.55524 1.55973 1.23565 1.08069 0.95751 1.02677 1.85415 1.01299 1.22723 1.74001 1.22851 0.98969 1.02667 1.43864 0.90958 1.24996 0.94491 0.98584 0.95535 1.70017 1.00226 1.37680 1.42289 0.86170 0.78128 0.82474 0.78730 1.20269 1.20743 1.19713 1.24378 0.98401 0.98932 0.93248 0.94709 0.89216 0.93503 0.92711 0.92766 0.91083 0.92246 0.92053 0.92802 0.92959 0.92353 0.90911 0.93788 0.90783 0.89227 0.85078 0.92549 0.90331 0.91792 0.89246 0.89239 0.92171 0.89063 0.91090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 8.96 37.16 0.33 -1.03 16 2 C -0.11 -0.85 5.28 -26.73 -0.14 -0.99 16 3 C -0.08 -0.57 2.18 -90.62 -0.20 -0.77 16 4 C -0.12 -0.74 5.40 -26.73 -0.14 -0.89 16 5 C -0.15 -0.89 9.68 37.16 0.36 -0.53 16 6 C 0.03 0.20 4.18 -3.82 -0.02 0.18 16 7 N -0.46 -4.09 2.99 -244.65 -0.73 -4.83 16 8 C -0.02 -0.14 7.13 -7.55 -0.05 -0.19 16 9 C 0.13 1.50 4.54 -67.72 -0.31 1.19 16 10 N -0.61 -8.38 3.11 -173.62 -0.54 -8.92 16 11 C 0.08 0.78 8.91 59.85 0.53 1.32 16 12 C 0.54 10.01 7.69 -10.98 -0.08 9.93 16 13 O -0.51 -11.58 15.38 5.55 0.09 -11.50 16 14 C -0.15 -3.01 4.71 36.01 0.17 -2.84 16 15 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 16 C -0.54 -15.15 9.50 30.94 0.29 -14.86 16 17 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 18 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 19 N -0.87 -26.07 13.22 55.49 0.73 -25.34 16 20 Si 0.92 21.29 29.55 -169.99 -5.02 16.27 16 21 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 23 H -0.27 -6.12 7.11 56.52 0.40 -5.71 16 24 C -0.02 -0.19 7.24 -7.54 -0.05 -0.25 16 25 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.09 0.91 5.79 -51.93 -0.30 0.61 16 27 H 0.05 0.44 8.10 -51.93 -0.42 0.02 16 28 H 0.05 0.40 6.29 -51.92 -0.33 0.07 16 29 H 0.05 0.42 8.13 -51.93 -0.42 0.00 16 30 H 0.07 0.58 8.11 -51.93 -0.42 0.16 16 31 H 0.06 0.35 8.14 -51.92 -0.42 -0.07 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.06 0.34 6.43 -51.93 -0.33 0.01 16 36 H 0.07 0.55 8.07 -51.93 -0.42 0.13 16 37 H 0.04 0.31 7.30 -51.93 -0.38 -0.06 16 38 H 0.07 0.61 5.85 -51.93 -0.30 0.31 16 39 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.13 1.87 7.29 -51.93 -0.38 1.49 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 42 H 0.08 0.80 6.44 -51.93 -0.33 0.46 16 43 H 0.06 0.49 6.19 -51.92 -0.32 0.17 16 44 H 0.09 1.65 7.40 -51.92 -0.38 1.27 16 45 H 0.09 1.66 8.11 -51.92 -0.42 1.24 16 46 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 47 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 48 H 0.07 0.65 6.73 -51.93 -0.35 0.30 16 LS Contribution 384.51 15.07 5.79 5.79 Total: -1.00 -32.61 384.51 -9.74 -42.35 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -8.44 Total: -2.24 kcal Atomic # 6 Polarization: -8.32 SS G_CDS: 0.59 Total: -7.73 kcal Atomic # 7 Polarization: -38.54 SS G_CDS: -0.54 Total: -39.08 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 0.09 Total: -11.50 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.61 -9.74 -42.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754568540.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.895 kcal (2) G-P(sol) polarization free energy of solvation -32.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds