Wall clock time and date at job start Tue Mar 31 2020 10:40:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.47093 * 2 1 4 4 C 1.52994 * 109.46864 * 186.43901 * 3 2 1 5 5 C 1.53008 * 109.47383 * 65.00580 * 4 3 2 6 6 C 1.52995 * 109.46992 * 66.44219 * 3 2 1 7 7 N 1.46904 * 109.47108 * 293.47947 * 6 3 2 8 8 C 1.47483 * 110.99922 * 265.97020 * 7 6 3 9 9 C 1.53509 * 87.93330 * 221.29642 * 8 7 6 10 10 N 1.46498 * 114.17215 * 139.67089 * 9 8 7 11 11 C 1.46498 * 120.00142 * 326.16308 * 10 9 8 12 12 C 1.34775 * 120.00007 * 146.15890 * 10 9 8 13 13 O 1.21284 * 119.99865 * 0.02562 * 12 10 9 14 14 C 1.50704 * 119.99963 * 180.02562 * 12 10 9 15 15 S 1.81003 * 109.47141 * 179.97438 * 14 12 10 16 16 C 1.76192 * 99.99939 * 179.97438 * 15 14 12 17 17 H 1.07997 * 120.00020 * 0.02562 * 16 15 14 18 18 C 1.38800 * 120.00124 * 179.97438 * 16 15 14 19 19 N 1.31630 * 119.99873 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00211 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46751 * 90.00318 * 20 18 16 22 22 H 1.48499 * 109.47021 * 210.00387 * 20 18 16 23 23 H 1.48501 * 109.47148 * 330.00527 * 20 18 16 24 24 C 1.47484 * 111.00064 * 170.00214 * 7 6 3 25 25 H 1.09003 * 109.46734 * 171.58817 * 1 2 3 26 26 H 1.09000 * 109.46883 * 291.58688 * 1 2 3 27 27 H 1.08996 * 109.46885 * 51.58665 * 1 2 3 28 28 H 1.09009 * 109.46639 * 240.00367 * 2 1 3 29 29 H 1.09000 * 109.47039 * 120.00516 * 2 1 3 30 30 H 1.08995 * 109.47226 * 306.44071 * 3 2 1 31 31 H 1.09010 * 109.47082 * 185.00012 * 4 3 2 32 32 H 1.08997 * 109.47645 * 305.00182 * 4 3 2 33 33 H 1.08997 * 109.47055 * 59.99240 * 5 4 3 34 34 H 1.08994 * 109.47354 * 179.97438 * 5 4 3 35 35 H 1.09001 * 109.46617 * 299.99490 * 5 4 3 36 36 H 1.09002 * 109.47533 * 53.47468 * 6 3 2 37 37 H 1.09002 * 109.47173 * 173.47979 * 6 3 2 38 38 H 1.08998 * 113.47473 * 336.06245 * 8 7 6 39 39 H 1.09006 * 113.47362 * 106.52927 * 8 7 6 40 40 H 1.09000 * 114.16832 * 272.37977 * 9 8 7 41 41 H 1.08994 * 109.47299 * 89.99470 * 11 10 9 42 42 H 1.08995 * 109.47198 * 209.99880 * 11 10 9 43 43 H 1.09008 * 109.46871 * 329.99506 * 11 10 9 44 44 H 1.08993 * 109.46916 * 299.99848 * 14 12 10 45 45 H 1.08997 * 109.46774 * 60.00174 * 14 12 10 46 46 H 0.96998 * 119.99975 * 179.97438 * 19 18 16 47 47 H 1.08997 * 113.47233 * 253.46784 * 24 7 6 48 48 H 1.08998 * 113.47777 * 23.93448 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5614 1.4455 -0.1618 5 6 3.9292 0.8863 -1.5377 6 6 1.6665 2.1155 1.3222 7 7 0.2063 2.2530 1.4063 8 6 -0.2288 3.5755 0.9197 9 6 -1.2199 3.6187 2.0912 10 7 -1.3315 4.9301 2.7345 11 6 -0.1581 5.8022 2.8283 12 6 -2.5136 5.3343 3.2401 13 8 -3.4849 4.6122 3.1628 14 6 -2.6285 6.6836 3.9014 15 16 -4.3279 6.9331 4.4722 16 6 -4.1793 8.5382 5.1835 17 1 -3.2282 9.0496 5.1682 18 6 -5.2847 9.1457 5.7626 19 7 -6.4440 8.5226 5.7809 20 14 -5.1270 10.8472 6.5174 21 1 -5.4137 11.8752 5.4847 22 1 -6.0951 10.9846 7.6350 23 1 -3.7467 11.0343 7.0322 24 6 -0.2078 2.6760 2.7571 25 1 -0.3633 -1.0167 -0.1503 26 1 -0.3633 0.3781 0.9556 27 1 -0.3633 0.6385 -0.8052 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.5857 1.9885 -0.8267 31 1 3.9343 2.4660 -0.0729 32 1 4.0106 0.8257 0.6142 33 1 3.4800 1.5060 -2.3137 34 1 5.0130 0.8888 -1.6531 35 1 3.5564 -0.1342 -1.6265 36 1 2.0224 1.5065 2.1532 37 1 2.1278 3.1019 1.3709 38 1 0.5481 4.3375 0.9799 39 1 -0.7120 3.5414 -0.0568 40 1 -2.1845 3.1584 1.8769 41 1 -0.1092 6.4416 1.9469 42 1 -0.2358 6.4209 3.7222 43 1 0.7439 5.1928 2.8855 44 1 -1.9486 6.7304 4.7519 45 1 -2.3683 7.4627 3.1848 46 1 -7.2165 8.9470 6.1859 47 1 -0.6731 1.8795 3.3378 48 1 0.5748 3.1980 3.3077 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754568540.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:40:03 Heat of formation + Delta-G solvation = -25.729543 kcal Electronic energy + Delta-G solvation = -24154.644037 eV Core-core repulsion = 20757.082692 eV Total energy + Delta-G solvation = -3397.561345 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.89759 -40.13199 -37.88598 -35.89176 -34.58104 -32.54834 -31.59128 -30.19774 -28.09423 -27.70564 -27.19255 -26.72122 -23.90303 -23.35716 -21.42133 -20.79811 -20.13267 -19.58517 -18.33346 -17.45134 -17.08130 -16.87724 -16.73720 -16.15837 -15.87135 -15.59481 -15.20213 -15.03552 -14.63503 -14.52468 -14.33358 -13.87721 -13.78410 -13.60070 -13.45944 -13.25666 -13.18765 -13.12303 -12.89915 -12.85389 -12.81323 -12.60308 -12.34419 -12.11504 -11.80820 -11.78805 -11.71250 -11.41943 -11.20756 -11.13960 -11.13564 -10.90488 -10.26145 -9.66976 -9.64037 -8.67226 -8.34168 -6.12625 1.25306 1.42889 1.45808 1.54102 1.56430 2.04266 2.27705 2.99902 3.01056 3.27341 3.47530 3.66643 3.79349 3.85307 3.93481 4.09715 4.15232 4.22894 4.25439 4.34411 4.39638 4.46618 4.52292 4.60169 4.60877 4.68671 4.69252 4.72346 4.79173 4.83763 4.89368 4.99941 5.00959 5.08956 5.15476 5.19573 5.26642 5.36181 5.39822 5.42072 5.52167 5.53384 5.62854 5.83180 6.05974 6.20016 6.26066 7.06910 7.12630 8.75026 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.038247 B = 0.002200 C = 0.002117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.911457 B =12721.934423 C =13222.406990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.107 4.107 3 C -0.075 4.075 4 C -0.117 4.117 5 C -0.153 4.153 6 C 0.027 3.973 7 N -0.461 5.461 8 C 0.000 4.000 9 C 0.109 3.891 10 N -0.599 5.599 11 C 0.068 3.932 12 C 0.532 3.468 13 O -0.565 6.565 14 C -0.122 4.122 15 S -0.155 6.155 16 C -0.544 4.544 17 H 0.084 0.916 18 C 0.012 3.988 19 N -0.911 5.911 20 Si 0.999 3.001 21 H -0.268 1.268 22 H -0.279 1.279 23 H -0.257 1.257 24 C -0.008 4.008 25 H 0.032 0.968 26 H 0.078 0.922 27 H 0.038 0.962 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.050 0.950 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.076 0.924 37 H 0.058 0.942 38 H 0.096 0.904 39 H 0.086 0.914 40 H 0.099 0.901 41 H 0.074 0.926 42 H 0.079 0.921 43 H 0.095 0.905 44 H 0.109 0.891 45 H 0.108 0.892 46 H 0.271 0.729 47 H 0.081 0.919 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.159 -11.869 -11.707 30.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.145 4.145 3 C -0.094 4.094 4 C -0.155 4.155 5 C -0.210 4.210 6 C -0.102 4.102 7 N -0.183 5.183 8 C -0.129 4.129 9 C 0.004 3.996 10 N -0.332 5.332 11 C -0.074 4.074 12 C 0.320 3.680 13 O -0.443 6.443 14 C -0.273 4.273 15 S 0.072 5.928 16 C -0.692 4.692 17 H 0.102 0.898 18 C -0.193 4.193 19 N -0.548 5.548 20 Si 0.821 3.179 21 H -0.193 1.193 22 H -0.204 1.204 23 H -0.181 1.181 24 C -0.138 4.138 25 H 0.051 0.949 26 H 0.097 0.903 27 H 0.057 0.943 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.095 0.905 37 H 0.076 0.924 38 H 0.114 0.886 39 H 0.105 0.895 40 H 0.117 0.883 41 H 0.092 0.908 42 H 0.098 0.902 43 H 0.114 0.886 44 H 0.127 0.873 45 H 0.126 0.874 46 H 0.080 0.920 47 H 0.100 0.900 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 23.359 -13.564 -12.084 29.591 hybrid contribution 0.905 2.238 0.860 2.563 sum 24.263 -11.326 -11.224 29.034 Atomic orbital electron populations 1.21901 0.95947 0.99223 1.03469 1.21483 0.95968 0.95839 1.01190 1.21105 0.95435 0.96290 0.96581 1.21522 0.94473 1.01528 0.97936 1.21811 1.01330 1.01156 0.96750 1.22815 0.87806 1.00656 0.98910 1.69090 1.14532 1.26058 1.08635 1.24377 0.97658 0.92036 0.98833 1.22655 0.99423 0.82990 0.94519 1.47767 1.09570 1.18242 1.57630 1.22087 0.87157 0.94504 1.03611 1.20198 0.82798 0.87337 0.77670 1.90683 1.38578 1.56652 1.58387 1.23377 1.02836 0.97366 1.03739 1.85627 1.08512 1.23696 1.74976 1.23187 0.99639 1.02600 1.43783 0.89811 1.26151 0.93924 1.03325 0.95882 1.70189 1.01249 1.39887 1.43463 0.84944 0.78785 0.76416 0.77767 1.19317 1.20389 1.18060 1.24288 0.97850 0.97990 0.93679 0.94897 0.90326 0.94293 0.92277 0.92632 0.91890 0.91606 0.91698 0.93060 0.92302 0.92575 0.90525 0.92387 0.88621 0.89522 0.88291 0.90763 0.90193 0.88627 0.87253 0.87385 0.92024 0.90049 0.89298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.59 8.96 71.98 0.65 -1.94 16 2 C -0.11 -1.49 5.28 30.60 0.16 -1.33 16 3 C -0.08 -0.91 2.18 -10.80 -0.02 -0.93 16 4 C -0.12 -1.12 5.40 30.59 0.17 -0.95 16 5 C -0.15 -1.46 9.68 71.98 0.70 -0.76 16 6 C 0.03 0.32 4.18 86.30 0.36 0.68 16 7 N -0.46 -7.44 2.99 -927.92 -2.77 -10.21 16 8 C 0.00 0.00 7.13 83.57 0.60 0.60 16 9 C 0.11 2.53 4.54 45.45 0.21 2.74 16 10 N -0.60 -15.46 3.11 -821.61 -2.56 -18.01 16 11 C 0.07 1.10 8.91 127.77 1.14 2.24 16 12 C 0.53 20.00 7.69 87.66 0.67 20.68 16 13 O -0.56 -26.76 15.38 -3.04 -0.05 -26.80 16 14 C -0.12 -4.83 4.71 71.24 0.34 -4.50 16 15 S -0.16 -8.67 20.57 -56.49 -1.16 -9.83 16 16 C -0.54 -30.95 9.50 67.95 0.65 -30.31 16 17 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 18 C 0.01 0.67 5.49 84.86 0.47 1.14 16 19 N -0.91 -56.12 13.22 21.65 0.29 -55.84 16 20 Si 1.00 43.36 29.55 68.60 2.03 45.39 16 21 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 22 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 23 H -0.26 -10.38 7.11 99.48 0.71 -9.68 16 24 C -0.01 -0.15 7.24 83.57 0.61 0.46 16 25 H 0.03 0.56 8.14 -2.39 -0.02 0.55 16 26 H 0.08 1.56 5.79 -2.39 -0.01 1.55 16 27 H 0.04 0.72 8.10 -2.39 -0.02 0.70 16 28 H 0.06 0.78 6.29 -2.38 -0.01 0.76 16 29 H 0.05 0.77 8.13 -2.39 -0.02 0.75 16 30 H 0.06 0.89 8.11 -2.39 -0.02 0.87 16 31 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 32 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.06 0.56 6.43 -2.39 -0.02 0.54 16 36 H 0.08 0.92 8.07 -2.39 -0.02 0.90 16 37 H 0.06 0.57 7.30 -2.39 -0.02 0.56 16 38 H 0.10 1.18 5.85 -2.39 -0.01 1.17 16 39 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 40 H 0.10 2.99 7.29 -2.39 -0.02 2.97 16 41 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.08 1.33 6.44 -2.39 -0.02 1.31 16 43 H 0.10 0.99 6.19 -2.38 -0.01 0.98 16 44 H 0.11 3.87 7.40 -2.40 -0.02 3.85 16 45 H 0.11 3.85 8.11 -2.40 -0.02 3.83 16 46 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 47 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 48 H 0.09 1.30 6.73 -2.39 -0.02 1.29 16 Total: -1.00 -74.24 384.51 3.36 -70.88 By element: Atomic # 1 Polarization: 15.70 SS G_CDS: 0.92 Total: 16.62 kcal Atomic # 6 Polarization: -18.86 SS G_CDS: 6.67 Total: -12.19 kcal Atomic # 7 Polarization: -79.02 SS G_CDS: -5.05 Total: -84.07 kcal Atomic # 8 Polarization: -26.76 SS G_CDS: -0.05 Total: -26.80 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Atomic # 16 Polarization: -8.67 SS G_CDS: -1.16 Total: -9.83 kcal Total: -74.24 3.36 -70.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754568540.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.150 kcal (2) G-P(sol) polarization free energy of solvation -74.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds