Wall clock time and date at job start Tue Mar 31 2020 10:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52990 * 109.47309 * 2 1 4 4 N 1.46502 * 109.47022 * 120.00173 * 2 1 3 5 5 C 1.46498 * 119.99988 * 119.20760 * 4 2 1 6 6 C 1.50701 * 109.47269 * 269.99820 * 5 4 2 7 7 H 1.07994 * 120.00078 * 359.97438 * 6 5 4 8 8 C 1.37879 * 119.99838 * 180.02562 * 6 5 4 9 9 N 1.31510 * 120.00114 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99989 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47042 * 89.99706 * 10 8 6 12 12 H 1.48496 * 109.47322 * 209.99932 * 10 8 6 13 13 H 1.48506 * 109.46705 * 329.99682 * 10 8 6 14 14 C 1.34783 * 119.99965 * 299.20763 * 4 2 1 15 15 O 1.21274 * 119.99648 * 5.31119 * 14 4 2 16 16 C 1.50700 * 120.00119 * 185.30918 * 14 4 2 17 17 C 1.52993 * 109.47203 * 177.82459 * 16 14 4 18 18 C 1.50699 * 109.47255 * 180.02562 * 17 16 14 19 19 C 1.34241 * 126.50110 * 265.00419 * 18 17 16 20 20 N 1.36828 * 109.93066 * 179.97438 * 19 18 17 21 21 H 0.97001 * 125.06660 * 179.97438 * 20 19 18 22 22 C 1.37684 * 109.87411 * 359.97438 * 20 19 18 23 23 C 1.39131 * 133.50812 * 179.97438 * 22 20 19 24 24 C 1.37751 * 119.77806 * 180.02562 * 23 22 20 25 25 C 1.38834 * 120.66596 * 359.97438 * 24 23 22 26 26 C 1.36621 * 120.53037 * 0.02562 * 25 24 23 27 27 C 1.39634 * 119.76200 * 359.97438 * 26 25 24 28 28 H 1.09001 * 109.47332 * 306.61477 * 1 2 3 29 29 H 1.08997 * 109.47322 * 66.61483 * 1 2 3 30 30 H 1.09000 * 109.47178 * 186.62047 * 1 2 3 31 31 H 1.09002 * 109.46922 * 239.99538 * 2 1 3 32 32 H 1.08998 * 109.47406 * 173.88217 * 3 2 1 33 33 H 1.09001 * 109.47178 * 293.89028 * 3 2 1 34 34 H 1.09006 * 109.46962 * 53.88934 * 3 2 1 35 35 H 1.08996 * 109.47373 * 30.00177 * 5 4 2 36 36 H 1.09009 * 109.46836 * 150.00220 * 5 4 2 37 37 H 0.96999 * 120.00262 * 180.02562 * 9 8 6 38 38 H 1.09008 * 109.46494 * 57.82612 * 16 14 4 39 39 H 1.08995 * 109.47264 * 297.83139 * 16 14 4 40 40 H 1.08999 * 109.46989 * 60.00117 * 17 16 14 41 41 H 1.09004 * 109.47464 * 300.00261 * 17 16 14 42 42 H 1.08001 * 125.03383 * 359.96846 * 19 18 17 43 43 H 1.07994 * 120.11331 * 0.31248 * 23 22 20 44 44 H 1.08000 * 119.66735 * 179.97438 * 24 23 22 45 45 H 1.08005 * 119.73338 * 179.97438 * 25 24 23 46 46 H 1.07998 * 120.12162 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.8462 -1.8918 1.0618 6 6 1.9608 -3.1108 1.0271 7 1 0.8888 -3.0018 1.0984 8 6 2.5196 -4.3654 0.9053 9 7 3.8251 -4.4982 0.8189 10 14 1.4222 -5.8764 0.8615 11 1 1.0503 -6.1775 -0.5443 12 1 2.1505 -7.0342 1.4397 13 1 0.1932 -5.6187 1.6544 14 6 1.7059 -0.2210 2.4203 15 8 0.9429 0.7148 2.5341 16 6 2.3047 -0.8586 3.6474 17 6 1.8331 -0.1075 4.8941 18 6 2.4324 -0.7447 6.1212 19 6 1.8573 -1.6751 6.8996 20 7 2.7018 -2.0157 7.9208 21 1 2.5062 -2.6678 8.6118 22 6 3.8708 -1.2951 7.8216 23 6 5.0364 -1.2514 8.5800 24 6 6.0581 -0.4023 8.2159 25 6 5.9377 0.4118 7.0978 26 6 4.8020 0.3851 6.3388 27 6 3.7538 -0.4681 6.6897 28 1 -0.3634 0.6129 0.8249 29 1 -0.3634 0.4079 -0.9432 30 1 -0.3633 -1.0208 0.1185 31 1 1.8933 -0.5139 -0.8900 32 1 3.1245 1.4444 0.1095 33 1 1.7688 1.9237 -0.9396 34 1 1.5901 1.9868 0.8303 35 1 3.4222 -1.8347 0.1382 36 1 3.5265 -1.9610 1.9107 37 1 4.2182 -5.3808 0.7329 38 1 3.3921 -0.8141 3.5860 39 1 1.9865 -1.8993 3.7081 40 1 0.7458 -0.1519 4.9554 41 1 2.1514 0.9333 4.8334 42 1 0.8737 -2.0927 6.7430 43 1 5.1417 -1.8845 9.4486 44 1 6.9620 -0.3696 8.8061 45 1 6.7480 1.0722 6.8262 46 1 4.7152 1.0215 5.4707 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036164102.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:38 Heat of formation + Delta-G solvation = 4.456287 kcal Electronic energy + Delta-G solvation = -26116.734026 eV Core-core repulsion = 22585.037685 eV Total energy + Delta-G solvation = -3531.696340 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.14009 -39.25376 -36.82930 -35.43568 -33.89889 -32.99939 -31.58308 -30.54405 -29.21624 -28.21412 -26.90662 -26.54884 -24.21758 -22.76743 -22.71229 -21.66381 -21.10655 -19.08908 -17.87599 -17.64205 -16.59375 -16.27035 -15.87744 -15.39398 -15.22039 -14.72161 -14.43514 -14.30751 -14.00308 -13.73702 -13.51336 -13.23034 -12.88402 -12.61391 -12.29877 -12.17932 -12.04862 -11.71033 -11.65774 -11.56563 -11.45695 -11.36166 -11.28698 -10.92137 -10.87214 -10.76650 -10.59984 -10.34823 -10.29082 -10.00459 -9.66157 -9.45206 -8.70133 -8.50206 -8.11152 -7.60460 -7.49050 -6.14863 -4.21813 1.23314 1.73209 2.81611 3.22228 3.23063 3.30250 3.32979 3.55968 3.99259 4.09414 4.36280 4.81859 4.93120 5.08130 5.17794 5.20271 5.33653 5.44736 5.51377 5.63589 5.74056 5.76228 5.77246 5.83332 5.92432 5.96805 6.10839 6.13288 6.15359 6.26753 6.31833 6.42075 6.48247 6.51959 6.63609 6.69341 6.73382 6.80241 6.85161 6.89383 6.94057 6.96507 7.25920 7.27946 7.62145 7.67982 7.81679 8.11206 8.47598 8.85335 9.16423 9.46103 10.91706 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.010468 B = 0.004277 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2674.098485 B = 6544.904243 C = 7942.735283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.148 3.852 3 C -0.164 4.164 4 N -0.594 5.594 5 C 0.237 3.763 6 C -0.534 4.534 7 H 0.060 0.940 8 C 0.065 3.935 9 N -0.892 5.892 10 Si 0.894 3.106 11 H -0.279 1.279 12 H -0.286 1.286 13 H -0.273 1.273 14 C 0.519 3.481 15 O -0.574 6.574 16 C -0.128 4.128 17 C -0.026 4.026 18 C -0.156 4.156 19 C 0.048 3.952 20 N -0.598 5.598 21 H 0.413 0.587 22 C 0.095 3.905 23 C -0.135 4.135 24 C -0.102 4.102 25 C -0.152 4.152 26 C -0.064 4.064 27 C -0.099 4.099 28 H 0.073 0.927 29 H 0.047 0.953 30 H 0.056 0.944 31 H 0.080 0.920 32 H 0.049 0.951 33 H 0.053 0.947 34 H 0.071 0.929 35 H 0.032 0.968 36 H 0.040 0.960 37 H 0.264 0.736 38 H 0.085 0.915 39 H 0.099 0.901 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.170 0.830 43 H 0.115 0.885 44 H 0.121 0.879 45 H 0.119 0.881 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.901 6.833 11.733 13.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.044 3.956 3 C -0.222 4.222 4 N -0.325 5.325 5 C 0.117 3.883 6 C -0.573 4.573 7 H 0.079 0.921 8 C -0.138 4.138 9 N -0.530 5.530 10 Si 0.722 3.278 11 H -0.205 1.205 12 H -0.211 1.211 13 H -0.198 1.198 14 C 0.308 3.692 15 O -0.456 6.456 16 C -0.168 4.168 17 C -0.065 4.065 18 C -0.163 4.163 19 C -0.077 4.077 20 N -0.200 5.200 21 H 0.249 0.751 22 C -0.013 4.013 23 C -0.156 4.156 24 C -0.122 4.122 25 C -0.171 4.171 26 C -0.083 4.083 27 C -0.104 4.104 28 H 0.092 0.908 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.098 0.902 32 H 0.068 0.932 33 H 0.072 0.928 34 H 0.090 0.910 35 H 0.050 0.950 36 H 0.058 0.942 37 H 0.074 0.926 38 H 0.104 0.896 39 H 0.118 0.882 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.187 0.813 43 H 0.133 0.867 44 H 0.139 0.861 45 H 0.137 0.863 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 0.611 7.061 11.815 13.778 hybrid contribution -0.465 -1.652 0.137 1.721 sum 0.147 5.409 11.953 13.120 Atomic orbital electron populations 1.22164 0.95769 1.02499 1.01587 1.20796 0.94193 0.92177 0.88435 1.22176 1.00818 0.97104 1.02069 1.48345 1.51344 1.28511 1.04292 1.19444 0.90082 0.80431 0.98363 1.21510 0.93759 0.90812 1.51173 0.92134 1.24934 0.94984 0.98986 0.94909 1.69921 1.09702 1.23871 1.49507 0.86554 0.80582 0.82319 0.78366 1.20549 1.21149 1.19824 1.20493 0.80900 0.82814 0.84969 1.90516 1.37338 1.30658 1.87053 1.21597 1.01803 1.01749 0.91657 1.19646 0.99786 0.98370 0.88665 1.20387 0.94002 1.02210 0.99738 1.21656 0.96546 0.99470 0.90024 1.41691 1.13744 1.37855 1.26744 0.75071 1.18265 0.88747 0.96156 0.98088 1.19966 0.92134 1.02743 1.00709 1.20747 0.97804 0.96282 0.97321 1.20595 0.98243 1.01596 0.96714 1.20329 0.91965 0.97101 0.98899 1.19139 0.95334 0.99570 0.96364 0.90814 0.93365 0.92535 0.90171 0.93179 0.92819 0.90977 0.94953 0.94233 0.92607 0.89644 0.88235 0.90857 0.91098 0.81312 0.86656 0.86125 0.86261 0.86047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.93 9.01 37.16 0.33 -2.59 16 2 C 0.15 2.79 3.28 -67.93 -0.22 2.57 16 3 C -0.16 -2.71 9.01 37.15 0.33 -2.38 16 4 N -0.59 -12.51 2.41 -167.47 -0.40 -12.91 16 5 C 0.24 5.65 4.99 -5.19 -0.03 5.62 16 6 C -0.53 -13.90 9.39 -34.44 -0.32 -14.22 16 7 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 8 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 9 N -0.89 -24.77 13.29 55.43 0.74 -24.03 16 10 Si 0.89 20.65 29.54 -169.99 -5.02 15.63 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 13 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 14 C 0.52 10.59 7.08 -10.98 -0.08 10.52 16 15 O -0.57 -12.18 12.37 5.56 0.07 -12.12 16 16 C -0.13 -2.35 4.17 -27.89 -0.12 -2.47 16 17 C -0.03 -0.42 5.04 -27.89 -0.14 -0.56 16 18 C -0.16 -2.35 5.57 -102.71 -0.57 -2.93 16 19 C 0.05 0.62 11.73 -16.73 -0.20 0.43 16 20 N -0.60 -7.00 6.07 -10.65 -0.06 -7.06 16 21 H 0.41 3.43 8.96 -40.82 -0.37 3.06 16 22 C 0.09 1.29 7.28 -83.99 -0.61 0.68 16 23 C -0.13 -1.60 10.08 -39.43 -0.40 -2.00 16 24 C -0.10 -1.16 10.01 -39.54 -0.40 -1.56 16 25 C -0.15 -1.86 9.97 -39.94 -0.40 -2.26 16 26 C -0.06 -0.91 10.05 -39.64 -0.40 -1.30 16 27 C -0.10 -1.51 6.35 -105.14 -0.67 -2.18 16 28 H 0.07 1.41 6.27 -51.93 -0.33 1.09 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 31 H 0.08 1.51 7.79 -51.93 -0.40 1.11 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.07 1.29 6.47 -51.93 -0.34 0.96 16 35 H 0.03 0.81 7.91 -51.93 -0.41 0.40 16 36 H 0.04 0.98 6.39 -51.92 -0.33 0.65 16 37 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 38 H 0.09 1.58 7.48 -51.92 -0.39 1.19 16 39 H 0.10 1.97 8.10 -51.93 -0.42 1.55 16 40 H 0.07 1.16 8.08 -51.93 -0.42 0.74 16 41 H 0.07 1.14 8.12 -51.93 -0.42 0.72 16 42 H 0.17 1.74 8.06 -52.49 -0.42 1.32 16 43 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 44 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 45 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 46 H 0.12 1.60 8.06 -52.49 -0.42 1.18 16 LS Contribution 378.01 15.07 5.70 5.70 Total: -1.00 -30.14 378.01 -10.13 -40.27 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -7.17 Total: 7.53 kcal Atomic # 6 Polarization: -9.04 SS G_CDS: -3.97 Total: -13.01 kcal Atomic # 7 Polarization: -44.27 SS G_CDS: 0.27 Total: -44.00 kcal Atomic # 8 Polarization: -12.18 SS G_CDS: 0.07 Total: -12.12 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -30.14 -10.13 -40.27 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036164102.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.731 kcal (2) G-P(sol) polarization free energy of solvation -30.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds