Wall clock time and date at job start Tue Mar 31 2020 10:51:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52990 * 109.47309 * 2 1 4 4 N 1.46502 * 109.47022 * 120.00173 * 2 1 3 5 5 C 1.46498 * 119.99988 * 119.20760 * 4 2 1 6 6 C 1.50701 * 109.47269 * 269.99820 * 5 4 2 7 7 H 1.07994 * 120.00078 * 359.97438 * 6 5 4 8 8 C 1.37879 * 119.99838 * 180.02562 * 6 5 4 9 9 N 1.31510 * 120.00114 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99989 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47042 * 89.99706 * 10 8 6 12 12 H 1.48496 * 109.47322 * 209.99932 * 10 8 6 13 13 H 1.48506 * 109.46705 * 329.99682 * 10 8 6 14 14 C 1.34783 * 119.99965 * 299.20763 * 4 2 1 15 15 O 1.21274 * 119.99648 * 5.31119 * 14 4 2 16 16 C 1.50700 * 120.00119 * 185.30918 * 14 4 2 17 17 C 1.52993 * 109.47203 * 177.82459 * 16 14 4 18 18 C 1.50699 * 109.47255 * 180.02562 * 17 16 14 19 19 C 1.34241 * 126.50110 * 265.00419 * 18 17 16 20 20 N 1.36828 * 109.93066 * 179.97438 * 19 18 17 21 21 H 0.97001 * 125.06660 * 179.97438 * 20 19 18 22 22 C 1.37684 * 109.87411 * 359.97438 * 20 19 18 23 23 C 1.39131 * 133.50812 * 179.97438 * 22 20 19 24 24 C 1.37751 * 119.77806 * 180.02562 * 23 22 20 25 25 C 1.38834 * 120.66596 * 359.97438 * 24 23 22 26 26 C 1.36621 * 120.53037 * 0.02562 * 25 24 23 27 27 C 1.39634 * 119.76200 * 359.97438 * 26 25 24 28 28 H 1.09001 * 109.47332 * 306.61477 * 1 2 3 29 29 H 1.08997 * 109.47322 * 66.61483 * 1 2 3 30 30 H 1.09000 * 109.47178 * 186.62047 * 1 2 3 31 31 H 1.09002 * 109.46922 * 239.99538 * 2 1 3 32 32 H 1.08998 * 109.47406 * 173.88217 * 3 2 1 33 33 H 1.09001 * 109.47178 * 293.89028 * 3 2 1 34 34 H 1.09006 * 109.46962 * 53.88934 * 3 2 1 35 35 H 1.08996 * 109.47373 * 30.00177 * 5 4 2 36 36 H 1.09009 * 109.46836 * 150.00220 * 5 4 2 37 37 H 0.96999 * 120.00262 * 180.02562 * 9 8 6 38 38 H 1.09008 * 109.46494 * 57.82612 * 16 14 4 39 39 H 1.08995 * 109.47264 * 297.83139 * 16 14 4 40 40 H 1.08999 * 109.46989 * 60.00117 * 17 16 14 41 41 H 1.09004 * 109.47464 * 300.00261 * 17 16 14 42 42 H 1.08001 * 125.03383 * 359.96846 * 19 18 17 43 43 H 1.07994 * 120.11331 * 0.31248 * 23 22 20 44 44 H 1.08000 * 119.66735 * 179.97438 * 24 23 22 45 45 H 1.08005 * 119.73338 * 179.97438 * 25 24 23 46 46 H 1.07998 * 120.12162 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6907 1.1962 5 6 2.8462 -1.8918 1.0618 6 6 1.9608 -3.1108 1.0271 7 1 0.8888 -3.0018 1.0984 8 6 2.5196 -4.3654 0.9053 9 7 3.8251 -4.4982 0.8189 10 14 1.4222 -5.8764 0.8615 11 1 1.0503 -6.1775 -0.5443 12 1 2.1505 -7.0342 1.4397 13 1 0.1932 -5.6187 1.6544 14 6 1.7059 -0.2210 2.4203 15 8 0.9429 0.7148 2.5341 16 6 2.3047 -0.8586 3.6474 17 6 1.8331 -0.1075 4.8941 18 6 2.4324 -0.7447 6.1212 19 6 1.8573 -1.6751 6.8996 20 7 2.7018 -2.0157 7.9208 21 1 2.5062 -2.6678 8.6118 22 6 3.8708 -1.2951 7.8216 23 6 5.0364 -1.2514 8.5800 24 6 6.0581 -0.4023 8.2159 25 6 5.9377 0.4118 7.0978 26 6 4.8020 0.3851 6.3388 27 6 3.7538 -0.4681 6.6897 28 1 -0.3634 0.6129 0.8249 29 1 -0.3634 0.4079 -0.9432 30 1 -0.3633 -1.0208 0.1185 31 1 1.8933 -0.5139 -0.8900 32 1 3.1245 1.4444 0.1095 33 1 1.7688 1.9237 -0.9396 34 1 1.5901 1.9868 0.8303 35 1 3.4222 -1.8347 0.1382 36 1 3.5265 -1.9610 1.9107 37 1 4.2182 -5.3808 0.7329 38 1 3.3921 -0.8141 3.5860 39 1 1.9865 -1.8993 3.7081 40 1 0.7458 -0.1519 4.9554 41 1 2.1514 0.9333 4.8334 42 1 0.8737 -2.0927 6.7430 43 1 5.1417 -1.8845 9.4486 44 1 6.9620 -0.3696 8.8061 45 1 6.7480 1.0722 6.8262 46 1 4.7152 1.0215 5.4707 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000036164102.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:51:37 Heat of formation + Delta-G solvation = -9.861826 kcal Electronic energy + Delta-G solvation = -26117.354906 eV Core-core repulsion = 22585.037685 eV Total energy + Delta-G solvation = -3532.317220 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.13219 -40.89987 -37.78035 -37.07344 -35.40807 -34.70614 -33.20092 -31.70724 -30.19649 -29.40934 -28.78649 -27.98351 -25.62540 -24.65751 -23.69897 -22.63321 -22.58530 -20.17951 -19.51646 -18.67937 -18.58992 -17.57621 -17.26906 -16.85472 -16.41924 -16.30707 -16.09416 -15.44024 -15.15053 -14.88881 -14.75600 -14.55074 -14.45604 -14.10551 -13.90160 -13.64138 -13.34929 -13.24391 -13.12809 -12.89384 -12.81662 -12.71078 -12.62352 -12.51660 -12.48820 -12.15647 -12.08515 -11.88993 -11.72062 -11.62157 -11.52769 -10.63690 -10.51294 -10.23757 -9.36334 -9.09373 -8.50521 -8.18663 -6.33346 0.25864 0.75397 1.40245 1.41811 1.51461 1.75437 1.88139 2.30550 2.36619 2.51268 3.03729 3.11048 3.77283 3.86766 3.96275 4.13130 4.24136 4.26390 4.31211 4.39055 4.40726 4.45753 4.53469 4.58718 4.72920 4.77411 4.81193 4.81479 4.95873 4.99889 5.02957 5.04715 5.07001 5.11849 5.21916 5.27824 5.34599 5.36594 5.45799 5.62943 5.69524 5.74728 5.84881 5.89829 6.00255 6.09353 6.29805 6.64134 6.77798 6.88509 7.35540 7.51206 8.86615 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.010468 B = 0.004277 C = 0.003524 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2674.098485 B = 6544.904243 C = 7942.735283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.136 3.864 3 C -0.152 4.152 4 N -0.599 5.599 5 C 0.253 3.747 6 C -0.541 4.541 7 H 0.052 0.948 8 C 0.021 3.979 9 N -0.922 5.922 10 Si 0.955 3.045 11 H -0.274 1.274 12 H -0.281 1.281 13 H -0.270 1.270 14 C 0.515 3.485 15 O -0.580 6.580 16 C -0.117 4.117 17 C -0.010 4.010 18 C -0.194 4.194 19 C 0.060 3.940 20 N -0.586 5.586 21 H 0.430 0.570 22 C 0.077 3.923 23 C -0.135 4.135 24 C -0.106 4.106 25 C -0.153 4.153 26 C -0.093 4.093 27 C -0.129 4.129 28 H 0.061 0.939 29 H 0.079 0.921 30 H 0.036 0.964 31 H 0.078 0.922 32 H 0.047 0.953 33 H 0.084 0.916 34 H 0.057 0.943 35 H 0.016 0.984 36 H 0.027 0.973 37 H 0.267 0.733 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.073 0.927 41 H 0.062 0.938 42 H 0.195 0.805 43 H 0.144 0.856 44 H 0.153 0.847 45 H 0.140 0.860 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.684 6.337 12.767 14.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.033 3.967 3 C -0.210 4.210 4 N -0.330 5.330 5 C 0.132 3.868 6 C -0.580 4.580 7 H 0.071 0.929 8 C -0.179 4.179 9 N -0.561 5.561 10 Si 0.780 3.220 11 H -0.200 1.200 12 H -0.207 1.207 13 H -0.194 1.194 14 C 0.305 3.695 15 O -0.463 6.463 16 C -0.157 4.157 17 C -0.048 4.048 18 C -0.201 4.201 19 C -0.067 4.067 20 N -0.190 5.190 21 H 0.269 0.731 22 C -0.031 4.031 23 C -0.156 4.156 24 C -0.124 4.124 25 C -0.172 4.172 26 C -0.112 4.112 27 C -0.133 4.133 28 H 0.080 0.920 29 H 0.098 0.902 30 H 0.055 0.945 31 H 0.097 0.903 32 H 0.066 0.934 33 H 0.103 0.897 34 H 0.076 0.924 35 H 0.034 0.966 36 H 0.045 0.955 37 H 0.076 0.924 38 H 0.096 0.904 39 H 0.102 0.898 40 H 0.091 0.909 41 H 0.081 0.919 42 H 0.212 0.788 43 H 0.162 0.838 44 H 0.170 0.830 45 H 0.157 0.843 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 0.387 6.572 12.867 14.454 hybrid contribution -0.357 -1.456 -0.174 1.509 sum 0.030 5.116 12.693 13.685 Atomic orbital electron populations 1.22060 0.94954 1.01175 1.02790 1.21067 0.94896 0.93309 0.87474 1.22064 1.00411 0.95371 1.03128 1.48360 1.51204 1.27963 1.05448 1.19065 0.89807 0.81127 0.96844 1.21673 0.93496 0.91812 1.50970 0.92949 1.25651 0.96132 1.01654 0.94495 1.70019 1.11157 1.24612 1.50315 0.85597 0.78927 0.78937 0.78496 1.20008 1.20675 1.19422 1.20803 0.80721 0.82715 0.85255 1.90505 1.37634 1.30949 1.87179 1.21508 1.01116 1.00936 0.92130 1.19417 0.99598 0.97598 0.88197 1.20362 0.94990 1.04289 1.00422 1.22026 0.97227 0.98100 0.89336 1.41681 1.12941 1.37644 1.26707 0.73054 1.18561 0.89888 0.96447 0.98173 1.20372 0.91326 1.02777 1.01107 1.21172 0.98835 0.95393 0.97049 1.20929 0.97975 1.01697 0.96587 1.20486 0.93010 0.97970 0.99731 1.19430 0.95713 1.00678 0.97507 0.92034 0.90213 0.94467 0.90333 0.93415 0.89748 0.92352 0.96560 0.95526 0.92430 0.90429 0.89790 0.90863 0.91911 0.78848 0.83838 0.82958 0.84254 0.86667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.38 9.01 71.98 0.65 -4.73 16 2 C 0.14 5.09 3.28 44.99 0.15 5.24 16 3 C -0.15 -4.90 9.01 71.98 0.65 -4.25 16 4 N -0.60 -25.78 2.41 -802.15 -1.93 -27.71 16 5 C 0.25 12.43 4.99 85.63 0.43 12.85 16 6 C -0.54 -28.59 9.39 25.60 0.24 -28.35 16 7 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 8 C 0.02 1.10 5.46 84.66 0.46 1.57 16 9 N -0.92 -51.66 13.29 21.45 0.28 -51.38 16 10 Si 0.96 42.18 29.54 68.60 2.03 44.20 16 11 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 12 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 13 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 14 C 0.52 21.59 7.08 87.66 0.62 22.21 16 15 O -0.58 -25.01 12.37 -3.01 -0.04 -25.04 16 16 C -0.12 -4.48 4.17 29.85 0.12 -4.36 16 17 C -0.01 -0.32 5.04 29.85 0.15 -0.17 16 18 C -0.19 -5.93 5.57 -18.63 -0.10 -6.04 16 19 C 0.06 1.50 11.73 83.00 0.97 2.47 16 20 N -0.59 -12.89 6.07 -187.61 -1.14 -14.03 16 21 H 0.43 6.22 8.96 -92.71 -0.83 5.38 16 22 C 0.08 2.02 7.28 39.03 0.28 2.31 16 23 C -0.14 -2.93 10.08 22.37 0.23 -2.71 16 24 C -0.11 -2.18 10.01 22.30 0.22 -1.95 16 25 C -0.15 -3.61 9.97 22.03 0.22 -3.39 16 26 C -0.09 -2.70 10.05 22.23 0.22 -2.48 16 27 C -0.13 -3.97 6.35 -20.20 -0.13 -4.10 16 28 H 0.06 2.33 6.27 -2.39 -0.01 2.31 16 29 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 30 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.08 2.95 7.79 -2.39 -0.02 2.94 16 32 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.06 2.05 6.47 -2.38 -0.02 2.04 16 35 H 0.02 0.85 7.91 -2.39 -0.02 0.83 16 36 H 0.03 1.37 6.39 -2.38 -0.02 1.36 16 37 H 0.27 14.17 8.31 -92.71 -0.77 13.40 16 38 H 0.08 3.06 7.48 -2.38 -0.02 3.04 16 39 H 0.08 3.47 8.10 -2.39 -0.02 3.45 16 40 H 0.07 2.36 8.08 -2.39 -0.02 2.34 16 41 H 0.06 2.13 8.12 -2.38 -0.02 2.11 16 42 H 0.19 3.68 8.06 -2.91 -0.02 3.66 16 43 H 0.14 2.21 8.06 -2.91 -0.02 2.19 16 44 H 0.15 2.11 8.06 -2.91 -0.02 2.09 16 45 H 0.14 2.59 8.06 -2.91 -0.02 2.57 16 46 H 0.12 3.28 8.06 -2.91 -0.02 3.25 16 Total: -1.00 -65.00 378.01 4.74 -60.26 By element: Atomic # 1 Polarization: 29.43 SS G_CDS: 0.14 Total: 29.57 kcal Atomic # 6 Polarization: -21.26 SS G_CDS: 5.39 Total: -15.87 kcal Atomic # 7 Polarization: -90.33 SS G_CDS: -2.78 Total: -93.11 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: -0.04 Total: -25.04 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.20 kcal Total: -65.00 4.74 -60.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036164102.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.401 kcal (2) G-P(sol) polarization free energy of solvation -64.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds