Wall clock time and date at job start Tue Mar 31 2020 10:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31507 * 120.00279 * 179.97438 * 7 5 3 9 9 Si 1.86802 * 119.99507 * 359.97438 * 7 5 3 10 10 H 1.48498 * 109.47368 * 90.00025 * 9 7 5 11 11 H 1.48505 * 109.46966 * 209.99896 * 9 7 5 12 12 H 1.48497 * 109.47165 * 329.99743 * 9 7 5 13 13 N 1.46497 * 109.47408 * 295.00294 * 3 2 1 14 14 C 1.34775 * 120.00077 * 84.99397 * 13 3 2 15 15 O 1.21281 * 120.00210 * 0.02562 * 14 13 3 16 16 C 1.50707 * 119.99886 * 180.02562 * 14 13 3 17 17 C 1.53002 * 109.46859 * 180.02562 * 16 14 13 18 18 C 1.53003 * 109.46761 * 179.97438 * 17 16 14 19 19 C 1.50702 * 109.46823 * 179.97438 * 18 17 16 20 20 C 1.34244 * 126.49895 * 265.02610 * 19 18 17 21 21 N 1.36826 * 109.93057 * 180.02562 * 20 19 18 22 22 H 0.97000 * 125.06555 * 180.02562 * 21 20 19 23 23 C 1.37692 * 109.87374 * 359.97438 * 21 20 19 24 24 C 1.39117 * 133.50565 * 180.02562 * 23 21 20 25 25 C 1.37753 * 119.78079 * 179.97438 * 24 23 21 26 26 C 1.38830 * 120.66158 * 359.97438 * 25 24 23 27 27 C 1.36627 * 120.52993 * 0.02562 * 26 25 24 28 28 C 1.39630 * 119.76649 * 359.68640 * 27 26 25 29 29 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 30 30 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 31 31 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 33 33 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 34 34 H 0.96999 * 119.99739 * 179.97438 * 8 7 5 35 35 H 0.97001 * 120.00250 * 264.99821 * 13 3 2 36 36 H 1.09006 * 109.46537 * 299.99572 * 16 14 13 37 37 H 1.09001 * 109.47335 * 60.00036 * 16 14 13 38 38 H 1.08999 * 109.46965 * 299.99890 * 17 16 14 39 39 H 1.09001 * 109.47363 * 59.99752 * 17 16 14 40 40 H 1.08996 * 109.46906 * 299.99795 * 18 17 16 41 41 H 1.09001 * 109.47269 * 59.99836 * 18 17 16 42 42 H 1.08002 * 125.03102 * 359.97438 * 20 19 18 43 43 H 1.08004 * 120.11285 * 359.95200 * 24 23 21 44 44 H 1.07999 * 119.66896 * 179.97438 * 25 24 23 45 45 H 1.08001 * 119.73118 * 179.97438 * 26 25 24 46 46 H 1.08005 * 120.11554 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 5.4540 0.8794 1.3358 9 14 3.0963 0.1099 2.5707 10 1 2.8744 -1.3261 2.2646 11 1 3.7942 0.2358 3.8755 12 1 1.7882 0.8093 2.6395 13 7 1.6525 2.0975 -1.2517 14 6 0.4352 2.6644 -1.3669 15 8 -0.3392 2.6326 -0.4340 16 6 0.0363 3.3378 -2.6548 17 6 -1.3824 3.8947 -2.5209 18 6 -1.7871 4.5789 -3.8283 19 6 -3.1847 5.1269 -3.6966 20 6 -4.3197 4.5197 -4.0778 21 7 -5.3933 5.3214 -3.8008 22 1 -6.3187 5.0970 -3.9857 23 6 -4.9646 6.4935 -3.2193 24 6 -5.6219 7.6268 -2.7512 25 6 -4.8957 8.6627 -2.2062 26 6 -3.5122 8.5881 -2.1182 27 6 -2.8464 7.4846 -2.5717 28 6 -3.5631 6.4202 -3.1223 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 5.8770 0.4816 2.1128 35 1 2.2720 2.1232 -1.9977 36 1 0.7278 4.1531 -2.8677 37 1 0.0674 2.6131 -3.4685 38 1 -2.0740 3.0797 -2.3077 39 1 -1.4130 4.6194 -1.7073 40 1 -1.0954 5.3939 -4.0410 41 1 -1.7563 3.8545 -4.6421 42 1 -4.3767 3.5434 -4.5361 43 1 -6.6979 7.6943 -2.8152 44 1 -5.4078 9.5418 -1.8438 45 1 -2.9578 9.4093 -1.6885 46 1 -1.7700 7.4338 -2.5003 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054184437.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:27:15 Heat of formation + Delta-G solvation = 2.061185 kcal Electronic energy + Delta-G solvation = -25164.300661 eV Core-core repulsion = 21632.500461 eV Total energy + Delta-G solvation = -3531.800200 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.40386 -39.18862 -37.08664 -35.63401 -34.66735 -32.36911 -31.97340 -31.32003 -29.70514 -29.31220 -27.65951 -26.38296 -23.01148 -22.83581 -22.14474 -21.91189 -20.32944 -19.54260 -19.38474 -17.98756 -17.10901 -16.56210 -15.81640 -15.71321 -15.57488 -15.31660 -14.66763 -14.53353 -14.16100 -14.01500 -13.82165 -13.40622 -13.15504 -12.87076 -12.82209 -12.42006 -12.11863 -12.01970 -11.83291 -11.74880 -11.63523 -11.40104 -11.29638 -11.01672 -10.87380 -10.84088 -10.59507 -10.47205 -9.89232 -9.68907 -9.51900 -9.18773 -8.97484 -8.71999 -8.36498 -7.97874 -7.76668 -6.18553 -4.20473 0.98748 1.49419 2.53090 2.95395 3.25227 3.37226 3.37969 3.43286 3.78176 4.09850 4.34240 4.56402 4.63773 4.82178 4.95191 5.08289 5.09334 5.15294 5.27118 5.32204 5.36410 5.45171 5.59120 5.69194 5.74541 5.81898 5.84063 5.93452 5.98770 6.01645 6.05960 6.22979 6.28466 6.39811 6.46993 6.53110 6.58789 6.67395 6.69591 6.74001 6.89865 7.00394 7.02418 7.32523 7.34824 7.37997 7.58011 8.21525 8.61137 8.79961 9.06576 9.43313 10.93624 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.022474 B = 0.002456 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.583224 B =11396.768937 C =11703.353695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.138 4.138 3 C 0.241 3.759 4 H 0.048 0.952 5 C -0.534 4.534 6 H 0.080 0.920 7 C 0.078 3.922 8 N -0.893 5.893 9 Si 0.883 3.117 10 H -0.276 1.276 11 H -0.295 1.295 12 H -0.260 1.260 13 N -0.704 5.704 14 C 0.500 3.500 15 O -0.552 6.552 16 C -0.143 4.143 17 C -0.094 4.094 18 C -0.046 4.046 19 C -0.159 4.159 20 C 0.047 3.953 21 N -0.598 5.598 22 H 0.414 0.586 23 C 0.094 3.906 24 C -0.135 4.135 25 C -0.100 4.100 26 C -0.150 4.150 27 C -0.066 4.066 28 C -0.101 4.101 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.030 0.970 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.267 0.733 35 H 0.394 0.606 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.169 0.831 43 H 0.117 0.883 44 H 0.122 0.878 45 H 0.121 0.879 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.627 10.468 -13.413 26.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.177 4.177 3 C 0.138 3.862 4 H 0.066 0.934 5 C -0.571 4.571 6 H 0.098 0.902 7 C -0.126 4.126 8 N -0.531 5.531 9 Si 0.713 3.287 10 H -0.203 1.203 11 H -0.222 1.222 12 H -0.185 1.185 13 N -0.352 5.352 14 C 0.286 3.714 15 O -0.431 6.431 16 C -0.183 4.183 17 C -0.132 4.132 18 C -0.084 4.084 19 C -0.166 4.166 20 C -0.079 4.079 21 N -0.201 5.201 22 H 0.250 0.750 23 C -0.013 4.013 24 C -0.155 4.155 25 C -0.120 4.120 26 C -0.169 4.169 27 C -0.084 4.084 28 C -0.106 4.106 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.049 0.951 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.227 0.773 36 H 0.106 0.894 37 H 0.104 0.896 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.186 0.814 43 H 0.135 0.865 44 H 0.140 0.860 45 H 0.139 0.861 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -21.110 10.320 -12.658 26.690 hybrid contribution -0.523 -0.704 0.335 0.939 sum -21.633 9.616 -12.323 26.689 Atomic orbital electron populations 1.21868 0.96968 0.98866 1.02299 1.22276 0.94337 1.00082 1.00967 1.19111 0.95480 0.88448 0.83196 0.93442 1.21077 0.88740 1.39581 1.07753 0.90241 1.24841 0.94856 0.95196 0.97694 1.69869 1.08689 1.44670 1.29823 0.86900 0.81002 0.79915 0.80884 1.20299 1.22227 1.18460 1.46194 1.15117 1.56138 1.17790 1.20537 0.82330 0.79036 0.89541 1.90661 1.51563 1.59975 1.40914 1.21714 0.98734 1.01144 0.96722 1.21279 0.94551 1.00442 0.96967 1.19980 0.91163 0.99376 0.97857 1.20296 0.95064 0.94413 1.06863 1.21621 0.85653 0.96790 1.03825 1.41699 1.08836 1.14881 1.54638 0.74990 1.18273 0.93826 0.88801 1.00420 1.19992 0.99079 0.92557 1.03912 1.20792 0.94135 0.97805 0.99222 1.20644 0.94364 0.98751 1.03168 1.20343 0.99707 0.91882 0.96496 1.19123 0.92000 0.95546 1.03881 0.92868 0.92935 0.95132 0.92917 0.92392 0.92338 0.77307 0.89392 0.89570 0.91451 0.91223 0.91189 0.91299 0.81402 0.86543 0.85956 0.86077 0.85936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 8.52 37.16 0.32 -2.59 16 2 C -0.14 -3.10 5.11 -26.74 -0.14 -3.23 16 3 C 0.24 5.76 1.83 -69.09 -0.13 5.63 16 4 H 0.05 1.27 6.63 -51.93 -0.34 0.92 16 5 C -0.53 -14.48 9.31 -34.44 -0.32 -14.80 16 6 H 0.08 2.26 7.98 -52.49 -0.42 1.84 16 7 C 0.08 2.19 5.45 -17.82 -0.10 2.10 16 8 N -0.89 -26.64 13.96 55.43 0.77 -25.87 16 9 Si 0.88 22.03 24.41 -169.99 -4.15 17.88 16 10 H -0.28 -6.67 6.83 56.52 0.39 -6.29 16 11 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 12 H -0.26 -6.46 6.53 56.52 0.37 -6.09 16 13 N -0.70 -13.78 5.02 -54.94 -0.28 -14.05 16 14 C 0.50 9.11 6.40 -10.98 -0.07 9.04 16 15 O -0.55 -12.02 13.12 5.56 0.07 -11.95 16 16 C -0.14 -1.82 5.70 -27.88 -0.16 -1.98 16 17 C -0.09 -1.19 4.49 -26.73 -0.12 -1.31 16 18 C -0.05 -0.46 5.75 -27.88 -0.16 -0.62 16 19 C -0.16 -1.75 5.57 -102.71 -0.57 -2.32 16 20 C 0.05 0.42 11.73 -16.73 -0.20 0.22 16 21 N -0.60 -5.13 6.07 -10.65 -0.06 -5.20 16 22 H 0.41 2.22 8.96 -40.82 -0.37 1.86 16 23 C 0.09 1.02 7.28 -83.99 -0.61 0.41 16 24 C -0.13 -1.28 10.08 -39.43 -0.40 -1.68 16 25 C -0.10 -0.93 10.01 -39.54 -0.40 -1.32 16 26 C -0.15 -1.51 9.97 -39.94 -0.40 -1.90 16 27 C -0.07 -0.75 10.05 -39.64 -0.40 -1.15 16 28 C -0.10 -1.22 6.35 -105.14 -0.67 -1.88 16 29 H 0.05 1.05 5.65 -51.93 -0.29 0.76 16 30 H 0.05 1.14 7.85 -51.93 -0.41 0.73 16 31 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.05 1.25 3.22 -51.93 -0.17 1.08 16 33 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 34 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 35 H 0.39 6.77 8.54 -40.82 -0.35 6.42 16 36 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 37 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.07 0.93 8.10 -51.93 -0.42 0.51 16 39 H 0.07 1.02 8.10 -51.93 -0.42 0.60 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.17 1.02 8.06 -52.49 -0.42 0.60 16 43 H 0.12 0.83 8.06 -52.48 -0.42 0.40 16 44 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 45 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 46 H 0.12 1.27 8.06 -52.48 -0.42 0.84 16 LS Contribution 369.11 15.07 5.56 5.56 Total: -1.00 -33.68 369.11 -9.61 -43.30 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -7.02 Total: 7.72 kcal Atomic # 6 Polarization: -12.88 SS G_CDS: -4.51 Total: -17.39 kcal Atomic # 7 Polarization: -45.55 SS G_CDS: 0.43 Total: -45.12 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: 0.07 Total: -11.95 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.15 Total: 17.88 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.68 -9.61 -43.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054184437.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.357 kcal (2) G-P(sol) polarization free energy of solvation -33.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds