Wall clock time and date at job start Tue Mar 31 2020 10:27:15
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.52992 * 109.47482 * 2 1
4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1
5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1
6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2
7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2
8 8 N 1.31507 * 120.00279 * 179.97438 * 7 5 3
9 9 Si 1.86802 * 119.99507 * 359.97438 * 7 5 3
10 10 H 1.48498 * 109.47368 * 90.00025 * 9 7 5
11 11 H 1.48505 * 109.46966 * 209.99896 * 9 7 5
12 12 H 1.48497 * 109.47165 * 329.99743 * 9 7 5
13 13 N 1.46497 * 109.47408 * 295.00294 * 3 2 1
14 14 C 1.34775 * 120.00077 * 84.99397 * 13 3 2
15 15 O 1.21281 * 120.00210 * 0.02562 * 14 13 3
16 16 C 1.50707 * 119.99886 * 180.02562 * 14 13 3
17 17 C 1.53002 * 109.46859 * 180.02562 * 16 14 13
18 18 C 1.53003 * 109.46761 * 179.97438 * 17 16 14
19 19 C 1.50702 * 109.46823 * 179.97438 * 18 17 16
20 20 C 1.34244 * 126.49895 * 265.02610 * 19 18 17
21 21 N 1.36826 * 109.93057 * 180.02562 * 20 19 18
22 22 H 0.97000 * 125.06555 * 180.02562 * 21 20 19
23 23 C 1.37692 * 109.87374 * 359.97438 * 21 20 19
24 24 C 1.39117 * 133.50565 * 180.02562 * 23 21 20
25 25 C 1.37753 * 119.78079 * 179.97438 * 24 23 21
26 26 C 1.38830 * 120.66158 * 359.97438 * 25 24 23
27 27 C 1.36627 * 120.52993 * 0.02562 * 26 25 24
28 28 C 1.39630 * 119.76649 * 359.68640 * 27 26 25
29 29 H 1.09002 * 109.47153 * 59.99783 * 1 2 3
30 30 H 1.09001 * 109.46832 * 299.99974 * 1 2 3
31 31 H 1.09004 * 109.47261 * 179.97438 * 1 2 3
32 32 H 1.09002 * 109.47153 * 120.00216 * 2 1 3
33 33 H 1.08998 * 109.47533 * 239.99846 * 2 1 3
34 34 H 0.96999 * 119.99739 * 179.97438 * 8 7 5
35 35 H 0.97001 * 120.00250 * 264.99821 * 13 3 2
36 36 H 1.09006 * 109.46537 * 299.99572 * 16 14 13
37 37 H 1.09001 * 109.47335 * 60.00036 * 16 14 13
38 38 H 1.08999 * 109.46965 * 299.99890 * 17 16 14
39 39 H 1.09001 * 109.47363 * 59.99752 * 17 16 14
40 40 H 1.08996 * 109.46906 * 299.99795 * 18 17 16
41 41 H 1.09001 * 109.47269 * 59.99836 * 18 17 16
42 42 H 1.08002 * 125.03102 * 359.97438 * 20 19 18
43 43 H 1.08004 * 120.11285 * 359.95200 * 24 23 21
44 44 H 1.07999 * 119.66896 * 179.97438 * 25 24 23
45 45 H 1.08001 * 119.73118 * 179.97438 * 26 25 24
46 46 H 1.08005 * 120.11554 * 179.97438 * 27 26 25
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 1 1.6055 1.9814 0.8419
5 6 3.5419 1.4442 0.1239
6 1 4.1473 1.8888 -0.6522
7 6 4.1434 0.8783 1.2280
8 7 5.4540 0.8794 1.3358
9 14 3.0963 0.1099 2.5707
10 1 2.8744 -1.3261 2.2646
11 1 3.7942 0.2358 3.8755
12 1 1.7882 0.8093 2.6395
13 7 1.6525 2.0975 -1.2517
14 6 0.4352 2.6644 -1.3669
15 8 -0.3392 2.6326 -0.4340
16 6 0.0363 3.3378 -2.6548
17 6 -1.3824 3.8947 -2.5209
18 6 -1.7871 4.5789 -3.8283
19 6 -3.1847 5.1269 -3.6966
20 6 -4.3197 4.5197 -4.0778
21 7 -5.3933 5.3214 -3.8008
22 1 -6.3187 5.0970 -3.9857
23 6 -4.9646 6.4935 -3.2193
24 6 -5.6219 7.6268 -2.7512
25 6 -4.8957 8.6627 -2.2062
26 6 -3.5122 8.5881 -2.1182
27 6 -2.8464 7.4846 -2.5717
28 6 -3.5631 6.4202 -3.1223
29 1 -0.3633 0.5139 -0.8900
30 1 -0.3633 0.5138 0.8900
31 1 -0.3634 -1.0277 -0.0005
32 1 1.8933 -0.5139 0.8900
33 1 1.8934 -0.5138 -0.8899
34 1 5.8770 0.4816 2.1128
35 1 2.2720 2.1232 -1.9977
36 1 0.7278 4.1531 -2.8677
37 1 0.0674 2.6131 -3.4685
38 1 -2.0740 3.0797 -2.3077
39 1 -1.4130 4.6194 -1.7073
40 1 -1.0954 5.3939 -4.0410
41 1 -1.7563 3.8545 -4.6421
42 1 -4.3767 3.5434 -4.5361
43 1 -6.6979 7.6943 -2.8152
44 1 -5.4078 9.5418 -1.8438
45 1 -2.9578 9.4093 -1.6885
46 1 -1.7700 7.4338 -2.5003
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000054184437.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:27:15
Heat of formation + Delta-G solvation = 2.061185 kcal
Electronic energy + Delta-G solvation = -25164.300661 eV
Core-core repulsion = 21632.500461 eV
Total energy + Delta-G solvation = -3531.800200 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 314.174 amu
Computer time = 0.59 seconds
Orbital eigenvalues (eV)
-41.40386 -39.18862 -37.08664 -35.63401 -34.66735 -32.36911 -31.97340 -31.32003
-29.70514 -29.31220 -27.65951 -26.38296 -23.01148 -22.83581 -22.14474 -21.91189
-20.32944 -19.54260 -19.38474 -17.98756 -17.10901 -16.56210 -15.81640 -15.71321
-15.57488 -15.31660 -14.66763 -14.53353 -14.16100 -14.01500 -13.82165 -13.40622
-13.15504 -12.87076 -12.82209 -12.42006 -12.11863 -12.01970 -11.83291 -11.74880
-11.63523 -11.40104 -11.29638 -11.01672 -10.87380 -10.84088 -10.59507 -10.47205
-9.89232 -9.68907 -9.51900 -9.18773 -8.97484 -8.71999 -8.36498 -7.97874
-7.76668 -6.18553 -4.20473 0.98748 1.49419 2.53090 2.95395 3.25227
3.37226 3.37969 3.43286 3.78176 4.09850 4.34240 4.56402 4.63773
4.82178 4.95191 5.08289 5.09334 5.15294 5.27118 5.32204 5.36410
5.45171 5.59120 5.69194 5.74541 5.81898 5.84063 5.93452 5.98770
6.01645 6.05960 6.22979 6.28466 6.39811 6.46993 6.53110 6.58789
6.67395 6.69591 6.74001 6.89865 7.00394 7.02418 7.32523 7.34824
7.37997 7.58011 8.21525 8.61137 8.79961 9.06576 9.43313 10.93624
Molecular weight = 314.17amu
Principal moments of inertia in cm(-1)
A = 0.022474 B = 0.002456 C = 0.002392
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1245.583224 B =11396.768937 C =11703.353695
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.143 4.143
2 C -0.138 4.138
3 C 0.241 3.759
4 H 0.048 0.952
5 C -0.534 4.534
6 H 0.080 0.920
7 C 0.078 3.922
8 N -0.893 5.893
9 Si 0.883 3.117
10 H -0.276 1.276
11 H -0.295 1.295
12 H -0.260 1.260
13 N -0.704 5.704
14 C 0.500 3.500
15 O -0.552 6.552
16 C -0.143 4.143
17 C -0.094 4.094
18 C -0.046 4.046
19 C -0.159 4.159
20 C 0.047 3.953
21 N -0.598 5.598
22 H 0.414 0.586
23 C 0.094 3.906
24 C -0.135 4.135
25 C -0.100 4.100
26 C -0.150 4.150
27 C -0.066 4.066
28 C -0.101 4.101
29 H 0.052 0.948
30 H 0.052 0.948
31 H 0.030 0.970
32 H 0.053 0.947
33 H 0.057 0.943
34 H 0.267 0.733
35 H 0.394 0.606
36 H 0.088 0.912
37 H 0.086 0.914
38 H 0.067 0.933
39 H 0.069 0.931
40 H 0.069 0.931
41 H 0.068 0.932
42 H 0.169 0.831
43 H 0.117 0.883
44 H 0.122 0.878
45 H 0.121 0.879
46 H 0.123 0.877
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -20.627 10.468 -13.413 26.739
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.177 4.177
3 C 0.138 3.862
4 H 0.066 0.934
5 C -0.571 4.571
6 H 0.098 0.902
7 C -0.126 4.126
8 N -0.531 5.531
9 Si 0.713 3.287
10 H -0.203 1.203
11 H -0.222 1.222
12 H -0.185 1.185
13 N -0.352 5.352
14 C 0.286 3.714
15 O -0.431 6.431
16 C -0.183 4.183
17 C -0.132 4.132
18 C -0.084 4.084
19 C -0.166 4.166
20 C -0.079 4.079
21 N -0.201 5.201
22 H 0.250 0.750
23 C -0.013 4.013
24 C -0.155 4.155
25 C -0.120 4.120
26 C -0.169 4.169
27 C -0.084 4.084
28 C -0.106 4.106
29 H 0.071 0.929
30 H 0.071 0.929
31 H 0.049 0.951
32 H 0.071 0.929
33 H 0.076 0.924
34 H 0.077 0.923
35 H 0.227 0.773
36 H 0.106 0.894
37 H 0.104 0.896
38 H 0.085 0.915
39 H 0.088 0.912
40 H 0.088 0.912
41 H 0.087 0.913
42 H 0.186 0.814
43 H 0.135 0.865
44 H 0.140 0.860
45 H 0.139 0.861
46 H 0.141 0.859
Dipole moment (debyes) X Y Z Total
from point charges -21.110 10.320 -12.658 26.690
hybrid contribution -0.523 -0.704 0.335 0.939
sum -21.633 9.616 -12.323 26.689
Atomic orbital electron populations
1.21868 0.96968 0.98866 1.02299 1.22276 0.94337 1.00082 1.00967
1.19111 0.95480 0.88448 0.83196 0.93442 1.21077 0.88740 1.39581
1.07753 0.90241 1.24841 0.94856 0.95196 0.97694 1.69869 1.08689
1.44670 1.29823 0.86900 0.81002 0.79915 0.80884 1.20299 1.22227
1.18460 1.46194 1.15117 1.56138 1.17790 1.20537 0.82330 0.79036
0.89541 1.90661 1.51563 1.59975 1.40914 1.21714 0.98734 1.01144
0.96722 1.21279 0.94551 1.00442 0.96967 1.19980 0.91163 0.99376
0.97857 1.20296 0.95064 0.94413 1.06863 1.21621 0.85653 0.96790
1.03825 1.41699 1.08836 1.14881 1.54638 0.74990 1.18273 0.93826
0.88801 1.00420 1.19992 0.99079 0.92557 1.03912 1.20792 0.94135
0.97805 0.99222 1.20644 0.94364 0.98751 1.03168 1.20343 0.99707
0.91882 0.96496 1.19123 0.92000 0.95546 1.03881 0.92868 0.92935
0.95132 0.92917 0.92392 0.92338 0.77307 0.89392 0.89570 0.91451
0.91223 0.91189 0.91299 0.81402 0.86543 0.85956 0.86077 0.85936
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.91 8.52 37.16 0.32 -2.59 16
2 C -0.14 -3.10 5.11 -26.74 -0.14 -3.23 16
3 C 0.24 5.76 1.83 -69.09 -0.13 5.63 16
4 H 0.05 1.27 6.63 -51.93 -0.34 0.92 16
5 C -0.53 -14.48 9.31 -34.44 -0.32 -14.80 16
6 H 0.08 2.26 7.98 -52.49 -0.42 1.84 16
7 C 0.08 2.19 5.45 -17.82 -0.10 2.10 16
8 N -0.89 -26.64 13.96 55.43 0.77 -25.87 16
9 Si 0.88 22.03 24.41 -169.99 -4.15 17.88 16
10 H -0.28 -6.67 6.83 56.52 0.39 -6.29 16
11 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16
12 H -0.26 -6.46 6.53 56.52 0.37 -6.09 16
13 N -0.70 -13.78 5.02 -54.94 -0.28 -14.05 16
14 C 0.50 9.11 6.40 -10.98 -0.07 9.04 16
15 O -0.55 -12.02 13.12 5.56 0.07 -11.95 16
16 C -0.14 -1.82 5.70 -27.88 -0.16 -1.98 16
17 C -0.09 -1.19 4.49 -26.73 -0.12 -1.31 16
18 C -0.05 -0.46 5.75 -27.88 -0.16 -0.62 16
19 C -0.16 -1.75 5.57 -102.71 -0.57 -2.32 16
20 C 0.05 0.42 11.73 -16.73 -0.20 0.22 16
21 N -0.60 -5.13 6.07 -10.65 -0.06 -5.20 16
22 H 0.41 2.22 8.96 -40.82 -0.37 1.86 16
23 C 0.09 1.02 7.28 -83.99 -0.61 0.41 16
24 C -0.13 -1.28 10.08 -39.43 -0.40 -1.68 16
25 C -0.10 -0.93 10.01 -39.54 -0.40 -1.32 16
26 C -0.15 -1.51 9.97 -39.94 -0.40 -1.90 16
27 C -0.07 -0.75 10.05 -39.64 -0.40 -1.15 16
28 C -0.10 -1.22 6.35 -105.14 -0.67 -1.88 16
29 H 0.05 1.05 5.65 -51.93 -0.29 0.76 16
30 H 0.05 1.14 7.85 -51.93 -0.41 0.73 16
31 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16
32 H 0.05 1.25 3.22 -51.93 -0.17 1.08 16
33 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16
34 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16
35 H 0.39 6.77 8.54 -40.82 -0.35 6.42 16
36 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16
37 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16
38 H 0.07 0.93 8.10 -51.93 -0.42 0.51 16
39 H 0.07 1.02 8.10 -51.93 -0.42 0.60 16
40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16
41 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16
42 H 0.17 1.02 8.06 -52.49 -0.42 0.60 16
43 H 0.12 0.83 8.06 -52.48 -0.42 0.40 16
44 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16
45 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16
46 H 0.12 1.27 8.06 -52.48 -0.42 0.84 16
LS Contribution 369.11 15.07 5.56 5.56
Total: -1.00 -33.68 369.11 -9.61 -43.30
By element:
Atomic # 1 Polarization: 14.74 SS G_CDS: -7.02 Total: 7.72 kcal
Atomic # 6 Polarization: -12.88 SS G_CDS: -4.51 Total: -17.39 kcal
Atomic # 7 Polarization: -45.55 SS G_CDS: 0.43 Total: -45.12 kcal
Atomic # 8 Polarization: -12.02 SS G_CDS: 0.07 Total: -11.95 kcal
Atomic # 14 Polarization: 22.03 SS G_CDS: -4.15 Total: 17.88 kcal
Total LS contribution 5.56 Total: 5.56 kcal
Total: -33.68 -9.61 -43.30 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000054184437.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 45.357 kcal
(2) G-P(sol) polarization free energy of solvation -33.683 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.674 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.613 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.296 kcal
(6) G-S(sol) free energy of system = (1) + (5) 2.061 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.59 seconds