Wall clock time and date at job start Tue Mar 31 2020 10:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31507 * 120.00279 * 179.97438 * 7 5 3 9 9 Si 1.86802 * 119.99507 * 359.97438 * 7 5 3 10 10 H 1.48498 * 109.47368 * 90.00025 * 9 7 5 11 11 H 1.48505 * 109.46966 * 209.99896 * 9 7 5 12 12 H 1.48497 * 109.47165 * 329.99743 * 9 7 5 13 13 N 1.46497 * 109.47408 * 295.00294 * 3 2 1 14 14 C 1.34775 * 120.00077 * 84.99397 * 13 3 2 15 15 O 1.21281 * 120.00210 * 0.02562 * 14 13 3 16 16 C 1.50707 * 119.99886 * 180.02562 * 14 13 3 17 17 C 1.53002 * 109.46859 * 180.02562 * 16 14 13 18 18 C 1.53003 * 109.46761 * 179.97438 * 17 16 14 19 19 C 1.50702 * 109.46823 * 179.97438 * 18 17 16 20 20 C 1.34244 * 126.49895 * 265.02610 * 19 18 17 21 21 N 1.36826 * 109.93057 * 180.02562 * 20 19 18 22 22 H 0.97000 * 125.06555 * 180.02562 * 21 20 19 23 23 C 1.37692 * 109.87374 * 359.97438 * 21 20 19 24 24 C 1.39117 * 133.50565 * 180.02562 * 23 21 20 25 25 C 1.37753 * 119.78079 * 179.97438 * 24 23 21 26 26 C 1.38830 * 120.66158 * 359.97438 * 25 24 23 27 27 C 1.36627 * 120.52993 * 0.02562 * 26 25 24 28 28 C 1.39630 * 119.76649 * 359.68640 * 27 26 25 29 29 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 30 30 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 31 31 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 33 33 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 34 34 H 0.96999 * 119.99739 * 179.97438 * 8 7 5 35 35 H 0.97001 * 120.00250 * 264.99821 * 13 3 2 36 36 H 1.09006 * 109.46537 * 299.99572 * 16 14 13 37 37 H 1.09001 * 109.47335 * 60.00036 * 16 14 13 38 38 H 1.08999 * 109.46965 * 299.99890 * 17 16 14 39 39 H 1.09001 * 109.47363 * 59.99752 * 17 16 14 40 40 H 1.08996 * 109.46906 * 299.99795 * 18 17 16 41 41 H 1.09001 * 109.47269 * 59.99836 * 18 17 16 42 42 H 1.08002 * 125.03102 * 359.97438 * 20 19 18 43 43 H 1.08004 * 120.11285 * 359.95200 * 24 23 21 44 44 H 1.07999 * 119.66896 * 179.97438 * 25 24 23 45 45 H 1.08001 * 119.73118 * 179.97438 * 26 25 24 46 46 H 1.08005 * 120.11554 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 5.4540 0.8794 1.3358 9 14 3.0963 0.1099 2.5707 10 1 2.8744 -1.3261 2.2646 11 1 3.7942 0.2358 3.8755 12 1 1.7882 0.8093 2.6395 13 7 1.6525 2.0975 -1.2517 14 6 0.4352 2.6644 -1.3669 15 8 -0.3392 2.6326 -0.4340 16 6 0.0363 3.3378 -2.6548 17 6 -1.3824 3.8947 -2.5209 18 6 -1.7871 4.5789 -3.8283 19 6 -3.1847 5.1269 -3.6966 20 6 -4.3197 4.5197 -4.0778 21 7 -5.3933 5.3214 -3.8008 22 1 -6.3187 5.0970 -3.9857 23 6 -4.9646 6.4935 -3.2193 24 6 -5.6219 7.6268 -2.7512 25 6 -4.8957 8.6627 -2.2062 26 6 -3.5122 8.5881 -2.1182 27 6 -2.8464 7.4846 -2.5717 28 6 -3.5631 6.4202 -3.1223 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 5.8770 0.4816 2.1128 35 1 2.2720 2.1232 -1.9977 36 1 0.7278 4.1531 -2.8677 37 1 0.0674 2.6131 -3.4685 38 1 -2.0740 3.0797 -2.3077 39 1 -1.4130 4.6194 -1.7073 40 1 -1.0954 5.3939 -4.0410 41 1 -1.7563 3.8545 -4.6421 42 1 -4.3767 3.5434 -4.5361 43 1 -6.6979 7.6943 -2.8152 44 1 -5.4078 9.5418 -1.8438 45 1 -2.9578 9.4093 -1.6885 46 1 -1.7700 7.4338 -2.5003 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054184437.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:27:14 Heat of formation + Delta-G solvation = -19.109011 kcal Electronic energy + Delta-G solvation = -25165.218670 eV Core-core repulsion = 21632.500461 eV Total energy + Delta-G solvation = -3532.718208 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.10675 -40.73227 -37.80169 -37.23854 -35.77251 -34.36685 -33.35244 -32.51503 -30.54895 -30.08921 -29.40518 -27.44088 -24.64869 -23.72640 -23.40747 -22.63594 -21.90035 -21.05267 -20.23522 -19.06073 -18.61389 -17.56460 -17.36492 -17.20883 -16.68065 -16.28738 -16.07804 -15.55007 -15.38887 -15.02283 -14.87589 -14.76438 -14.61651 -14.09928 -13.89245 -13.79738 -13.69570 -13.41243 -13.03951 -12.84476 -12.76204 -12.72887 -12.51197 -12.37569 -12.24814 -12.20945 -11.85114 -11.68198 -11.39771 -11.35411 -11.21621 -10.85625 -10.57056 -10.41726 -9.68118 -9.10456 -8.48720 -8.38025 -6.42681 0.25429 0.73528 1.25570 1.34052 1.44153 1.80228 1.92904 2.25769 2.32920 2.63287 2.97982 3.02280 3.86015 3.95658 4.00724 4.07385 4.23021 4.25004 4.27572 4.33839 4.40513 4.48561 4.51331 4.55183 4.71063 4.77286 4.84318 4.87797 4.90328 5.00342 5.01653 5.03133 5.12250 5.15704 5.18869 5.26010 5.44029 5.44819 5.52601 5.54602 5.63218 5.74123 5.75215 5.85333 5.92555 6.17733 6.29836 6.60033 6.78161 7.00335 7.21489 7.60661 8.77244 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.022474 B = 0.002456 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.583224 B =11396.768937 C =11703.353695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.137 4.137 3 C 0.248 3.752 4 H 0.016 0.984 5 C -0.531 4.531 6 H 0.057 0.943 7 C 0.029 3.971 8 N -0.934 5.934 9 Si 0.936 3.064 10 H -0.259 1.259 11 H -0.294 1.294 12 H -0.264 1.264 13 N -0.705 5.705 14 C 0.496 3.504 15 O -0.590 6.590 16 C -0.130 4.130 17 C -0.085 4.085 18 C -0.034 4.034 19 C -0.194 4.194 20 C 0.058 3.942 21 N -0.589 5.589 22 H 0.429 0.571 23 C 0.073 3.927 24 C -0.138 4.138 25 C -0.109 4.109 26 C -0.158 4.158 27 C -0.093 4.093 28 C -0.130 4.130 29 H 0.057 0.943 30 H 0.032 0.968 31 H 0.057 0.943 32 H 0.041 0.959 33 H 0.070 0.930 34 H 0.270 0.730 35 H 0.406 0.594 36 H 0.108 0.892 37 H 0.121 0.879 38 H 0.054 0.946 39 H 0.038 0.962 40 H 0.071 0.929 41 H 0.094 0.906 42 H 0.201 0.799 43 H 0.141 0.859 44 H 0.148 0.852 45 H 0.135 0.865 46 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.828 9.897 -15.047 29.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.175 4.175 3 C 0.142 3.858 4 H 0.034 0.966 5 C -0.569 4.569 6 H 0.075 0.925 7 C -0.171 4.171 8 N -0.573 5.573 9 Si 0.764 3.236 10 H -0.185 1.185 11 H -0.221 1.221 12 H -0.189 1.189 13 N -0.354 5.354 14 C 0.284 3.716 15 O -0.471 6.471 16 C -0.170 4.170 17 C -0.123 4.123 18 C -0.072 4.072 19 C -0.201 4.201 20 C -0.069 4.069 21 N -0.193 5.193 22 H 0.268 0.732 23 C -0.035 4.035 24 C -0.158 4.158 25 C -0.128 4.128 26 C -0.177 4.177 27 C -0.111 4.111 28 C -0.135 4.135 29 H 0.076 0.924 30 H 0.051 0.949 31 H 0.076 0.924 32 H 0.059 0.941 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.242 0.758 36 H 0.126 0.874 37 H 0.139 0.861 38 H 0.073 0.927 39 H 0.056 0.944 40 H 0.090 0.910 41 H 0.112 0.888 42 H 0.218 0.782 43 H 0.158 0.842 44 H 0.165 0.835 45 H 0.153 0.847 46 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -23.336 9.754 -14.330 29.070 hybrid contribution 0.135 -0.438 0.806 0.928 sum -23.201 9.316 -13.524 28.425 Atomic orbital electron populations 1.21746 0.95220 1.00406 1.01561 1.22191 0.95823 0.98550 1.00930 1.18733 0.93024 0.89667 0.84331 0.96570 1.21329 0.90489 1.38264 1.06856 0.92465 1.25541 0.95705 0.95989 0.99844 1.69973 1.10204 1.46311 1.30847 0.86043 0.79206 0.79969 0.78426 1.18482 1.22127 1.18856 1.46069 1.16205 1.56397 1.16743 1.21495 0.81089 0.78026 0.90964 1.90649 1.52491 1.61145 1.42810 1.21734 0.98968 1.02016 0.94247 1.21168 0.94200 0.99301 0.97632 1.19876 0.90874 0.99681 0.96771 1.20518 0.96155 0.94698 1.08696 1.22146 0.85098 0.97455 1.02163 1.41747 1.09714 1.14102 1.53734 0.73209 1.18555 0.93755 0.89934 1.01209 1.20351 1.00395 0.92060 1.03031 1.21145 0.93923 0.98745 0.98996 1.20933 0.95188 0.98773 1.02783 1.20516 0.99910 0.92794 0.97899 1.19506 0.93068 0.96365 1.04558 0.92393 0.94920 0.92354 0.94119 0.91161 0.92125 0.75836 0.87352 0.86087 0.92735 0.94351 0.91020 0.88772 0.78211 0.84159 0.83462 0.84675 0.86209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.15 8.52 71.98 0.61 -4.54 16 2 C -0.14 -5.94 5.11 30.59 0.16 -5.78 16 3 C 0.25 11.80 1.83 44.24 0.08 11.89 16 4 H 0.02 0.89 6.63 -2.39 -0.02 0.87 16 5 C -0.53 -29.20 9.31 25.60 0.24 -28.96 16 6 H 0.06 3.33 7.98 -2.91 -0.02 3.30 16 7 C 0.03 1.64 5.45 84.66 0.46 2.11 16 8 N -0.93 -56.58 13.96 21.45 0.30 -56.28 16 9 Si 0.94 45.69 24.41 68.60 1.67 47.37 16 10 H -0.26 -11.86 6.83 99.48 0.68 -11.18 16 11 H -0.29 -14.17 7.11 99.48 0.71 -13.47 16 12 H -0.26 -12.93 6.53 99.48 0.65 -12.28 16 13 N -0.70 -27.02 5.02 -446.11 -2.24 -29.26 16 14 C 0.50 17.59 6.40 87.66 0.56 18.16 16 15 O -0.59 -25.72 13.12 -3.03 -0.04 -25.76 16 16 C -0.13 -3.02 5.70 29.85 0.17 -2.85 16 17 C -0.08 -2.04 4.49 30.60 0.14 -1.91 16 18 C -0.03 -0.62 5.75 29.85 0.17 -0.45 16 19 C -0.19 -4.03 5.57 -18.63 -0.10 -4.13 16 20 C 0.06 0.91 11.73 83.00 0.97 1.89 16 21 N -0.59 -9.01 6.07 -187.61 -1.14 -10.15 16 22 H 0.43 3.62 8.96 -92.71 -0.83 2.79 16 23 C 0.07 1.52 7.28 39.03 0.28 1.80 16 24 C -0.14 -2.44 10.08 22.37 0.23 -2.21 16 25 C -0.11 -1.90 10.01 22.30 0.22 -1.68 16 26 C -0.16 -3.16 9.97 22.03 0.22 -2.94 16 27 C -0.09 -2.17 10.05 22.23 0.22 -1.95 16 28 C -0.13 -3.14 6.35 -20.20 -0.13 -3.26 16 29 H 0.06 2.18 5.65 -2.39 -0.01 2.17 16 30 H 0.03 1.38 7.85 -2.39 -0.02 1.36 16 31 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 32 H 0.04 1.86 3.22 -2.39 -0.01 1.86 16 33 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 34 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 35 H 0.41 13.46 8.54 -92.71 -0.79 12.67 16 36 H 0.11 2.14 8.14 -2.38 -0.02 2.12 16 37 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.05 1.44 8.10 -2.39 -0.02 1.42 16 39 H 0.04 1.15 8.10 -2.39 -0.02 1.13 16 40 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.20 1.69 8.06 -2.91 -0.02 1.67 16 43 H 0.14 1.68 8.06 -2.91 -0.02 1.66 16 44 H 0.15 1.70 8.06 -2.91 -0.02 1.68 16 45 H 0.14 2.15 8.06 -2.91 -0.02 2.12 16 46 H 0.12 2.66 8.06 -2.91 -0.02 2.64 16 Total: -1.00 -74.95 369.11 2.35 -72.60 By element: Atomic # 1 Polarization: 27.02 SS G_CDS: -0.71 Total: 26.31 kcal Atomic # 6 Polarization: -29.33 SS G_CDS: 4.51 Total: -24.82 kcal Atomic # 7 Polarization: -92.61 SS G_CDS: -3.08 Total: -95.69 kcal Atomic # 8 Polarization: -25.72 SS G_CDS: -0.04 Total: -25.76 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 1.67 Total: 47.37 kcal Total: -74.95 2.35 -72.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054184437.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.492 kcal (2) G-P(sol) polarization free energy of solvation -74.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds