Wall clock time and date at job start Tue Mar 31 2020 10:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53006 * 109.47341 * 2 1 4 4 N 1.46494 * 109.47035 * 179.97438 * 3 2 1 5 5 C 1.34780 * 119.99628 * 180.02562 * 4 3 2 6 6 O 1.21282 * 120.00313 * 359.97438 * 5 4 3 7 7 C 1.50701 * 119.99872 * 179.97438 * 5 4 3 8 8 C 1.53118 * 109.52229 * 179.97438 * 7 5 4 9 9 C 1.53033 * 109.27790 * 182.37884 * 8 7 5 10 10 N 1.46852 * 109.52507 * 59.18085 * 9 8 7 11 11 C 1.46902 * 110.99971 * 174.15820 * 10 9 8 12 12 C 1.53001 * 109.46901 * 169.99744 * 11 10 9 13 13 C 1.53000 * 109.46886 * 180.02562 * 12 11 10 14 14 S 1.81002 * 109.47004 * 180.02562 * 13 12 11 15 15 C 1.76193 * 100.00049 * 180.02562 * 14 13 12 16 16 H 1.08005 * 120.00026 * 359.97438 * 15 14 13 17 17 C 1.38806 * 120.00056 * 180.02562 * 15 14 13 18 18 N 1.31623 * 119.99640 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00053 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47361 * 89.99587 * 19 17 15 21 21 H 1.48497 * 109.47059 * 210.00081 * 19 17 15 22 22 H 1.48507 * 109.47001 * 329.99878 * 19 17 15 23 23 C 1.46839 * 111.19741 * 298.25593 * 10 9 8 24 24 C 1.53039 * 109.52305 * 61.74163 * 23 10 9 25 25 H 1.09003 * 109.46500 * 60.00140 * 1 2 3 26 26 H 1.08993 * 109.47326 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47321 * 300.00611 * 1 2 3 28 28 H 1.08998 * 109.47489 * 239.99909 * 2 1 3 29 29 H 1.08997 * 109.46741 * 119.99474 * 2 1 3 30 30 H 1.08998 * 109.46903 * 59.99551 * 3 2 1 31 31 H 1.08997 * 109.46808 * 300.00010 * 3 2 1 32 32 H 0.96995 * 120.00441 * 359.97438 * 4 3 2 33 33 H 1.08991 * 109.52366 * 300.12351 * 7 5 4 34 34 H 1.08998 * 109.49987 * 62.44067 * 8 7 5 35 35 H 1.09004 * 109.50544 * 302.31951 * 8 7 5 36 36 H 1.09005 * 109.46805 * 299.16244 * 9 8 7 37 37 H 1.09009 * 109.45643 * 179.19582 * 9 8 7 38 38 H 1.09001 * 109.46712 * 50.00147 * 11 10 9 39 39 H 1.09002 * 109.47411 * 290.00258 * 11 10 9 40 40 H 1.09001 * 109.46652 * 60.00371 * 12 11 10 41 41 H 1.08992 * 109.47514 * 300.00460 * 12 11 10 42 42 H 1.09002 * 109.47398 * 300.00496 * 13 12 11 43 43 H 1.09001 * 109.47194 * 60.00677 * 13 12 11 44 44 H 0.97010 * 119.99946 * 180.02562 * 18 17 15 45 45 H 1.09001 * 109.46400 * 181.75406 * 23 10 9 46 46 H 1.08995 * 109.46502 * 301.72618 * 23 10 9 47 47 H 1.08994 * 109.50793 * 180.87369 * 24 23 10 48 48 H 1.09003 * 109.50071 * 60.75960 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1789 2.6097 0.0012 6 8 3.5725 3.6600 0.0008 7 6 5.6859 2.6097 0.0025 8 6 6.1976 4.0528 0.0023 9 6 7.7268 4.0467 -0.0564 10 7 8.1685 3.3517 -1.2723 11 6 9.6256 3.4466 -1.4330 12 6 10.0764 2.5126 -2.5579 13 6 11.5941 2.6109 -2.7248 14 16 12.1274 1.5065 -4.0561 15 6 13.8625 1.8118 -4.0302 16 1 14.2769 2.5137 -3.3216 17 6 14.6968 1.1510 -4.9213 18 7 14.1917 0.2959 -5.7852 19 14 16.5362 1.4751 -4.8944 20 1 17.1927 0.5252 -3.9607 21 1 17.0913 1.2910 -6.2593 22 1 16.7870 2.8671 -4.4417 23 6 7.7291 1.9506 -1.2723 24 6 6.1999 1.8941 -1.2499 25 1 -0.3632 0.5138 -0.8901 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8934 -0.5138 -0.8899 29 1 1.8932 -0.5137 0.8900 30 1 1.6767 1.9564 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 3.9900 0.6025 0.0013 33 1 6.0494 2.0941 0.8912 34 1 5.8704 4.5550 0.9128 35 1 5.8022 4.5791 -0.8665 36 1 8.1219 3.5324 0.8197 37 1 8.0937 5.0731 -0.0710 38 1 10.1134 3.1564 -0.5024 39 1 9.8978 4.4724 -1.6814 40 1 9.5886 2.8028 -3.4884 41 1 9.8043 1.4868 -2.3095 42 1 11.8667 3.6367 -2.9730 43 1 12.0816 2.3204 -1.7942 44 1 14.7748 -0.1662 -6.4077 45 1 8.0977 1.4544 -2.1702 46 1 8.1241 1.4461 -0.3906 47 1 5.8743 0.8541 -1.2343 48 1 5.8046 2.3864 -2.1384 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000074980933.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:58:22 Heat of formation + Delta-G solvation = -68.308788 kcal Electronic energy + Delta-G solvation = -23402.820488 eV Core-core repulsion = 20003.412768 eV Total energy + Delta-G solvation = -3399.407719 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.48223 -38.70687 -36.19898 -34.84509 -33.07084 -32.43571 -31.73990 -30.87209 -27.43508 -26.02482 -25.45749 -23.73492 -23.36908 -22.11805 -21.16548 -20.30498 -19.75830 -17.53151 -17.37399 -16.50328 -16.21559 -15.83942 -15.35673 -14.98746 -14.80463 -14.78454 -14.45787 -14.13970 -13.90442 -13.56003 -13.47991 -13.30935 -12.84851 -12.70304 -12.57278 -12.35079 -12.21269 -11.73503 -11.64226 -11.41194 -11.37904 -11.36229 -11.28313 -11.07360 -10.93396 -10.83808 -10.66104 -10.55023 -10.23550 -9.88197 -9.51427 -9.40853 -9.05768 -8.30807 -8.29837 -6.52646 -6.22836 -3.92885 2.39653 2.85673 3.21314 3.22383 3.29125 3.54077 3.89951 4.22744 4.30841 4.37953 4.47469 4.52592 4.60019 4.74637 4.98450 5.00914 5.12767 5.13255 5.15204 5.18829 5.24280 5.30491 5.32364 5.33853 5.46063 5.46713 5.52148 5.54026 5.62767 5.69679 5.70185 5.73896 5.80606 5.86200 5.92732 5.96975 6.07442 6.14961 6.20371 6.32358 6.58661 6.73316 7.08066 7.10481 7.16302 7.60684 7.95080 8.36743 9.23592 10.85345 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.026377 B = 0.001915 C = 0.001806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.258107 B =14617.366839 C =15496.723488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.137 4.137 3 C 0.117 3.883 4 N -0.734 5.734 5 C 0.520 3.480 6 O -0.539 6.539 7 C -0.108 4.108 8 C -0.094 4.094 9 C 0.055 3.945 10 N -0.538 5.538 11 C 0.060 3.940 12 C -0.101 4.101 13 C -0.113 4.113 14 S -0.133 6.133 15 C -0.516 4.516 16 H 0.072 0.928 17 C 0.071 3.929 18 N -0.870 5.870 19 Si 0.918 3.082 20 H -0.277 1.277 21 H -0.282 1.282 22 H -0.272 1.272 23 C 0.048 3.952 24 C -0.106 4.106 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.401 0.599 33 H 0.093 0.907 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.032 0.968 37 H 0.078 0.922 38 H 0.032 0.968 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.067 0.933 42 H 0.061 0.939 43 H 0.058 0.942 44 H 0.267 0.733 45 H 0.093 0.907 46 H 0.034 0.966 47 H 0.069 0.931 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.330 0.321 14.188 27.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.174 4.174 3 C -0.007 4.007 4 N -0.387 5.387 5 C 0.306 3.694 6 O -0.415 6.415 7 C -0.130 4.130 8 C -0.132 4.132 9 C -0.073 4.073 10 N -0.263 5.263 11 C -0.068 4.068 12 C -0.139 4.139 13 C -0.262 4.262 14 S 0.095 5.905 15 C -0.665 4.665 16 H 0.090 0.910 17 C -0.138 4.138 18 N -0.505 5.505 19 Si 0.744 3.256 20 H -0.203 1.203 21 H -0.207 1.207 22 H -0.197 1.197 23 C -0.080 4.080 24 C -0.144 4.144 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.235 0.765 33 H 0.111 0.889 34 H 0.089 0.911 35 H 0.098 0.902 36 H 0.050 0.950 37 H 0.096 0.904 38 H 0.050 0.950 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.086 0.914 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.077 0.923 45 H 0.111 0.889 46 H 0.053 0.947 47 H 0.088 0.912 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -24.564 0.506 12.967 27.781 hybrid contribution 2.527 0.108 1.511 2.946 sum -22.037 0.615 14.479 26.375 Atomic orbital electron populations 1.21678 0.94523 1.02228 1.02346 1.21744 0.97053 0.95814 1.02838 1.21397 0.79725 0.97141 1.02397 1.46069 1.07309 1.08941 1.76346 1.20748 0.90147 0.83373 0.75115 1.90698 1.70493 1.31359 1.48988 1.21436 0.90924 0.99879 1.00731 1.21393 0.94277 0.94044 1.03523 1.22107 0.95106 0.99435 0.90633 1.61990 1.13158 1.13860 1.37254 1.22190 0.85793 1.00931 0.97923 1.21445 0.94745 0.99137 0.98616 1.23234 0.96945 1.03202 1.02814 1.84594 1.08530 1.54936 1.42424 1.22695 0.90972 1.29836 1.22951 0.90977 1.25012 0.99553 0.94614 0.94610 1.70022 1.35710 1.25586 1.19220 0.86169 0.83017 0.78786 0.77580 1.20305 1.20745 1.19684 1.22225 0.94178 0.89554 1.02036 1.21601 0.96063 0.99708 0.97019 0.92292 0.92117 0.92391 0.91141 0.91318 0.91637 0.91486 0.76486 0.88893 0.91059 0.90158 0.94992 0.90359 0.94966 0.90595 0.90677 0.91413 0.92051 0.92355 0.92324 0.88876 0.94749 0.91217 0.90349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.62 9.91 37.16 0.37 -0.26 16 2 C -0.14 -0.61 6.05 -26.73 -0.16 -0.77 16 3 C 0.12 0.80 5.67 -4.04 -0.02 0.78 16 4 N -0.73 -5.31 5.46 -60.30 -0.33 -5.64 16 5 C 0.52 5.27 7.16 -10.98 -0.08 5.19 16 6 O -0.54 -7.59 15.98 5.56 0.09 -7.50 16 7 C -0.11 -0.95 2.59 -91.65 -0.24 -1.19 16 8 C -0.09 -0.95 4.68 -26.65 -0.12 -1.08 16 9 C 0.06 0.57 5.42 -3.83 -0.02 0.55 16 10 N -0.54 -6.44 4.81 -234.67 -1.13 -7.57 16 11 C 0.06 0.80 5.27 -3.82 -0.02 0.78 16 12 C -0.10 -1.61 4.47 -26.73 -0.12 -1.73 16 13 C -0.11 -2.25 5.67 37.16 0.21 -2.04 16 14 S -0.13 -3.47 21.44 -107.50 -2.30 -5.77 16 15 C -0.52 -14.82 9.50 30.94 0.29 -14.53 16 16 H 0.07 2.01 7.80 -52.48 -0.41 1.60 16 17 C 0.07 2.02 5.49 -17.43 -0.10 1.92 16 18 N -0.87 -25.95 13.22 55.49 0.73 -25.22 16 19 Si 0.92 21.53 29.55 -169.99 -5.02 16.50 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 23 C 0.05 0.51 4.85 -3.84 -0.02 0.49 16 24 C -0.11 -0.93 5.26 -26.65 -0.14 -1.07 16 25 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 26 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 27 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 28 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.40 1.92 7.96 -40.82 -0.33 1.59 16 33 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.08 0.96 8.04 -51.93 -0.42 0.54 16 36 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.08 0.78 8.12 -51.92 -0.42 0.36 16 38 H 0.03 0.42 8.08 -51.93 -0.42 0.00 16 39 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 41 H 0.07 1.06 6.21 -51.93 -0.32 0.74 16 42 H 0.06 1.23 8.14 -51.91 -0.42 0.80 16 43 H 0.06 1.16 8.14 -51.92 -0.42 0.73 16 44 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 45 H 0.09 1.09 5.81 -51.93 -0.30 0.78 16 46 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.07 0.46 7.67 -51.93 -0.40 0.06 16 48 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 392.06 15.07 5.91 5.91 Total: -1.00 -33.17 392.06 -11.14 -44.31 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -8.91 Total: -2.08 kcal Atomic # 6 Polarization: -12.78 SS G_CDS: -0.17 Total: -12.95 kcal Atomic # 7 Polarization: -37.70 SS G_CDS: -0.72 Total: -38.43 kcal Atomic # 8 Polarization: -7.59 SS G_CDS: 0.09 Total: -7.50 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -3.47 SS G_CDS: -2.30 Total: -5.77 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.17 -11.14 -44.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000074980933.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.998 kcal (2) G-P(sol) polarization free energy of solvation -33.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds