Wall clock time and date at job start Tue Mar 31 2020 10:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53002 * 109.46840 * 2 1 4 4 N 1.46493 * 109.47153 * 180.02562 * 3 2 1 5 5 C 1.37098 * 120.00084 * 265.55679 * 4 3 2 6 6 H 1.08001 * 120.00356 * 145.66922 * 5 4 3 7 7 C 1.38956 * 119.99667 * 325.66981 * 5 4 3 8 8 N 1.31411 * 120.00077 * 338.41181 * 7 5 4 9 9 Si 1.86799 * 119.99684 * 158.41321 * 7 5 4 10 10 H 1.48497 * 109.47595 * 60.00032 * 9 7 5 11 11 H 1.48508 * 109.46888 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47266 * 299.99691 * 9 7 5 13 13 C 1.34776 * 120.00493 * 85.55714 * 4 3 2 14 14 O 1.21296 * 119.99748 * 359.97438 * 13 4 3 15 15 C 1.50693 * 120.00368 * 180.02562 * 13 4 3 16 16 C 1.53006 * 109.47456 * 179.97438 * 15 13 4 17 17 C 1.50699 * 109.47327 * 179.97438 * 16 15 13 18 18 C 1.34235 * 126.50462 * 264.97622 * 17 16 15 19 19 N 1.36830 * 109.93173 * 180.02562 * 18 17 16 20 20 C 1.46503 * 125.06375 * 180.02562 * 19 18 17 21 21 C 1.37689 * 109.87072 * 359.97438 * 19 18 17 22 22 C 1.39131 * 133.50240 * 179.97438 * 21 19 18 23 23 C 1.37746 * 119.77441 * 180.02562 * 22 21 19 24 24 C 1.38831 * 120.66909 * 0.04408 * 23 22 21 25 25 C 1.36620 * 120.52635 * 359.97438 * 24 23 22 26 26 C 1.39627 * 119.76673 * 359.97438 * 25 24 23 27 27 H 1.09007 * 109.46914 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47508 * 300.00038 * 1 2 3 29 29 H 1.08999 * 109.46990 * 60.00505 * 1 2 3 30 30 H 1.08993 * 109.47492 * 239.99639 * 2 1 3 31 31 H 1.08999 * 109.46990 * 119.99495 * 2 1 3 32 32 H 1.08993 * 109.47373 * 59.99565 * 3 2 1 33 33 H 1.09006 * 109.46975 * 299.99943 * 3 2 1 34 34 H 0.96997 * 119.99432 * 179.97438 * 8 7 5 35 35 H 1.09002 * 109.47429 * 59.99486 * 15 13 4 36 36 H 1.09001 * 109.47392 * 299.99628 * 15 13 4 37 37 H 1.09000 * 109.46457 * 59.99957 * 16 15 13 38 38 H 1.08991 * 109.46812 * 300.00176 * 16 15 13 39 39 H 1.08000 * 125.03299 * 359.76251 * 18 17 16 40 40 H 1.09000 * 109.47088 * 90.02400 * 20 19 18 41 41 H 1.08995 * 109.47000 * 210.02137 * 20 19 18 42 42 H 1.09006 * 109.46913 * 330.02305 * 20 19 18 43 43 H 1.07998 * 120.11220 * 0.06253 * 22 21 19 44 44 H 1.08007 * 119.66500 * 180.02562 * 23 22 21 45 45 H 1.08005 * 119.73480 * 179.97438 * 24 23 22 46 46 H 1.08001 * 120.11830 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1909 1.5345 1.1828 6 1 5.1299 1.0149 1.3045 7 6 3.6780 2.2960 2.2258 8 7 2.8030 3.2447 1.9783 9 14 4.2324 1.9712 3.9798 10 1 5.7007 2.1689 4.0796 11 1 3.5422 2.9114 4.8992 12 1 3.8943 0.5748 4.3553 13 6 4.1784 1.3524 -1.1645 14 8 3.5715 1.2707 -2.2116 15 6 5.6853 1.3519 -1.1651 16 6 6.1948 1.2399 -2.6035 17 6 7.7018 1.2400 -2.6040 18 6 8.5002 2.3044 -2.7821 19 7 9.8117 1.9194 -2.7188 20 6 10.9603 2.8165 -2.8687 21 6 9.8911 0.5636 -2.4923 22 6 10.9539 -0.3222 -2.3456 23 6 10.7047 -1.6585 -2.1224 24 6 9.4022 -2.1323 -2.0430 25 6 8.3438 -1.2800 -2.1845 26 6 8.5733 0.0786 -2.4103 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6766 1.9564 -0.8900 34 1 2.4448 3.7760 2.7064 35 1 6.0486 0.5041 -0.5842 36 1 6.0491 2.2788 -0.7216 37 1 5.8315 2.0875 -3.1845 38 1 5.8310 0.3130 -3.0466 39 1 8.1580 3.3142 -2.9543 40 1 11.2460 3.2071 -1.8920 41 1 11.7971 2.2664 -3.2989 42 1 10.6922 3.6432 -3.5265 43 1 11.9707 0.0366 -2.4059 44 1 11.5310 -2.3446 -2.0084 45 1 9.2242 -3.1831 -1.8679 46 1 7.3333 -1.6559 -2.1219 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124890179.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:56:00 Heat of formation + Delta-G solvation = 13.477220 kcal Electronic energy + Delta-G solvation = -25809.790504 eV Core-core repulsion = 22278.485341 eV Total energy + Delta-G solvation = -3531.305163 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.20067 -38.52433 -36.95021 -35.22365 -34.00781 -32.75914 -31.32919 -30.83330 -30.24064 -28.63967 -26.65724 -25.59549 -24.53276 -22.89361 -22.46772 -21.23159 -20.54782 -19.18428 -18.90174 -16.79225 -16.55995 -16.39602 -15.69140 -15.35285 -15.26371 -14.71847 -14.34760 -14.25584 -13.91419 -13.79060 -13.71286 -13.06519 -13.02181 -12.81696 -12.66585 -12.42300 -12.03726 -11.79839 -11.65962 -11.47293 -11.31516 -11.28175 -11.11532 -10.98644 -10.88520 -10.68430 -10.56686 -10.30823 -10.27923 -10.04826 -9.67561 -9.36004 -9.01720 -8.31510 -8.03942 -7.45377 -7.35646 -6.33367 -3.99788 1.26455 1.75288 2.85003 2.89274 3.14584 3.22439 3.25357 4.00574 4.05244 4.15680 4.65015 4.77359 4.87724 4.96689 5.03382 5.05558 5.10443 5.20426 5.29177 5.54263 5.56953 5.72333 5.84542 5.86751 5.89408 5.96574 6.02878 6.06417 6.15627 6.27121 6.37438 6.49602 6.55849 6.58780 6.69324 6.73050 6.76739 6.84645 6.89346 6.90149 6.94408 7.05330 7.20296 7.36646 7.42407 7.43861 7.56710 8.00220 8.44137 9.13153 9.61364 10.04624 10.67686 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.013153 B = 0.003547 C = 0.003331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.316550 B = 7892.162022 C = 8404.269076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.134 4.134 3 C 0.113 3.887 4 N -0.440 5.440 5 C -0.336 4.336 6 H 0.089 0.911 7 C 0.043 3.957 8 N -0.860 5.860 9 Si 0.911 3.089 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.273 1.273 13 C 0.467 3.533 14 O -0.610 6.610 15 C -0.109 4.109 16 C -0.028 4.028 17 C -0.150 4.150 18 C 0.042 3.958 19 N -0.492 5.492 20 C 0.082 3.918 21 C 0.096 3.904 22 C -0.135 4.135 23 C -0.103 4.103 24 C -0.154 4.154 25 C -0.062 4.062 26 C -0.100 4.100 27 H 0.044 0.956 28 H 0.050 0.950 29 H 0.049 0.951 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.107 0.893 33 H 0.050 0.950 34 H 0.269 0.731 35 H 0.075 0.925 36 H 0.083 0.917 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.167 0.833 40 H 0.066 0.934 41 H 0.076 0.924 42 H 0.080 0.920 43 H 0.113 0.887 44 H 0.120 0.880 45 H 0.119 0.881 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.292 -3.645 -5.824 14.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.173 4.173 3 C -0.010 4.010 4 N -0.158 5.158 5 C -0.464 4.464 6 H 0.107 0.893 7 C -0.163 4.163 8 N -0.496 5.496 9 Si 0.737 3.263 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.198 1.198 13 C 0.257 3.743 14 O -0.496 6.496 15 C -0.149 4.149 16 C -0.066 4.066 17 C -0.156 4.156 18 C -0.081 4.081 19 N -0.176 5.176 20 C -0.060 4.060 21 C -0.010 4.010 22 C -0.156 4.156 23 C -0.122 4.122 24 C -0.174 4.174 25 C -0.080 4.080 26 C -0.105 4.105 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.124 0.876 33 H 0.068 0.932 34 H 0.079 0.921 35 H 0.094 0.906 36 H 0.101 0.899 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.184 0.816 40 H 0.085 0.915 41 H 0.095 0.905 42 H 0.099 0.901 43 H 0.131 0.869 44 H 0.138 0.862 45 H 0.137 0.863 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 13.123 -3.254 -6.242 14.892 hybrid contribution 0.414 0.054 1.163 1.235 sum 13.537 -3.200 -5.080 14.809 Atomic orbital electron populations 1.21656 0.96710 1.00339 1.01332 1.21832 0.94602 0.99637 1.01200 1.21437 0.81714 0.94388 1.03476 1.43500 1.04710 1.62684 1.04900 1.19404 1.07511 1.29356 0.90086 0.89295 1.25300 0.97078 0.93639 1.00260 1.69928 1.30172 1.16706 1.32841 0.86260 0.79022 0.78509 0.82486 1.19781 1.20944 1.19819 1.20505 0.89610 0.80627 0.83608 1.90506 1.70630 1.56674 1.31834 1.21306 0.93774 1.03464 0.96394 1.19679 0.87040 1.03078 0.96804 1.20510 0.95414 0.90983 1.08726 1.21621 0.81429 0.99468 1.05579 1.43708 1.05928 1.05563 1.62387 1.21862 0.87763 0.93829 1.02502 1.18261 0.95543 0.83487 1.03729 1.19916 0.96124 0.92647 1.06909 1.20731 0.96856 0.94205 1.00391 1.20582 0.92415 0.99545 1.04835 1.20359 0.99302 0.91212 0.97163 1.19157 0.91828 0.93712 1.05797 0.93716 0.93056 0.93171 0.92940 0.92486 0.87580 0.93172 0.92082 0.90631 0.89907 0.91071 0.91106 0.81570 0.91538 0.90544 0.90077 0.86881 0.86215 0.86302 0.85932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 9.91 37.16 0.37 -2.12 16 2 C -0.13 -2.84 6.23 -26.73 -0.17 -3.00 16 3 C 0.11 2.78 4.91 -4.04 -0.02 2.76 16 4 N -0.44 -11.26 2.55 -114.82 -0.29 -11.56 16 5 C -0.34 -8.58 8.70 -14.93 -0.13 -8.71 16 6 H 0.09 2.20 6.98 -52.49 -0.37 1.83 16 7 C 0.04 1.08 4.94 -17.47 -0.09 1.00 16 8 N -0.86 -22.76 11.31 55.50 0.63 -22.13 16 9 Si 0.91 19.61 29.60 -169.99 -5.03 14.58 16 10 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 11 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 12 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 13 C 0.47 11.52 7.61 -10.99 -0.08 11.44 16 14 O -0.61 -16.17 15.64 5.54 0.09 -16.08 16 15 C -0.11 -2.25 4.34 -27.88 -0.12 -2.37 16 16 C -0.03 -0.50 5.04 -27.88 -0.14 -0.64 16 17 C -0.15 -2.43 5.57 -102.71 -0.57 -3.00 16 18 C 0.04 0.59 11.20 -16.73 -0.19 0.41 16 19 N -0.49 -6.33 3.18 -121.80 -0.39 -6.72 16 20 C 0.08 0.68 11.03 59.85 0.66 1.34 16 21 C 0.10 1.38 6.81 -83.99 -0.57 0.81 16 22 C -0.14 -1.66 9.97 -39.43 -0.39 -2.05 16 23 C -0.10 -1.20 10.01 -39.54 -0.40 -1.59 16 24 C -0.15 -1.96 9.97 -39.95 -0.40 -2.35 16 25 C -0.06 -0.92 10.05 -39.65 -0.40 -1.32 16 26 C -0.10 -1.61 6.35 -105.14 -0.67 -2.27 16 27 H 0.04 0.68 8.14 -51.92 -0.42 0.25 16 28 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 30 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 32 H 0.11 2.74 5.34 -51.93 -0.28 2.46 16 33 H 0.05 1.28 7.56 -51.93 -0.39 0.88 16 34 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 35 H 0.08 1.53 7.65 -51.93 -0.40 1.13 16 36 H 0.08 1.73 8.10 -51.93 -0.42 1.31 16 37 H 0.07 1.29 8.10 -51.93 -0.42 0.87 16 38 H 0.07 1.32 8.10 -51.93 -0.42 0.90 16 39 H 0.17 1.92 8.06 -52.49 -0.42 1.49 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.08 0.52 8.10 -51.93 -0.42 0.10 16 42 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.11 1.10 8.06 -52.49 -0.42 0.68 16 44 H 0.12 1.06 8.06 -52.48 -0.42 0.63 16 45 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 46 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 381.75 15.07 5.75 5.75 Total: -1.00 -30.85 381.75 -9.87 -40.72 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -7.32 Total: 7.12 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: -3.30 Total: -11.69 kcal Atomic # 7 Polarization: -40.35 SS G_CDS: -0.05 Total: -40.40 kcal Atomic # 8 Polarization: -16.17 SS G_CDS: 0.09 Total: -16.08 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -5.03 Total: 14.58 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.85 -9.87 -40.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124890179.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.200 kcal (2) G-P(sol) polarization free energy of solvation -30.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds