Wall clock time and date at job start Tue Mar 31 2020 10:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50697 * 120.00365 * 2 1 4 4 N 1.46501 * 109.47248 * 124.99364 * 3 2 1 5 5 C 1.46496 * 119.99985 * 270.00134 * 4 3 2 6 6 C 1.50706 * 109.47284 * 269.99979 * 5 4 3 7 7 C 1.30997 * 119.99862 * 124.99962 * 6 5 4 8 8 C 1.34777 * 119.99702 * 90.00245 * 4 3 2 9 9 O 1.21583 * 119.99968 * 359.97438 * 8 4 3 10 10 N 1.34775 * 119.99683 * 179.72597 * 8 4 3 11 11 C 1.46497 * 119.99932 * 175.16423 * 10 8 4 12 12 H 1.09001 * 109.47244 * 38.65157 * 11 10 8 13 13 C 1.53004 * 109.47535 * 158.64863 * 11 10 8 14 14 C 1.50700 * 109.46940 * 294.44624 * 13 11 10 15 15 H 1.07997 * 120.00143 * 355.12256 * 14 13 11 16 16 C 1.37882 * 119.99802 * 175.13804 * 14 13 11 17 17 N 1.31513 * 119.99776 * 179.97438 * 16 14 13 18 18 Si 1.86791 * 119.99931 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.47420 * 90.00388 * 18 16 14 20 20 H 1.48503 * 109.47142 * 210.00582 * 18 16 14 21 21 H 1.48505 * 109.47256 * 330.00267 * 18 16 14 22 22 C 1.50697 * 109.47414 * 278.65035 * 11 10 8 23 23 C 1.38237 * 119.99584 * 319.72982 * 22 11 10 24 24 C 1.38243 * 119.99762 * 179.78423 * 23 22 11 25 25 C 1.38234 * 119.99896 * 0.44082 * 24 23 22 26 26 C 1.38239 * 120.00232 * 359.81028 * 25 24 23 27 27 C 1.38233 * 119.99848 * 359.97438 * 26 25 24 28 28 H 1.08002 * 120.00291 * 179.97438 * 1 2 3 29 29 H 1.08001 * 120.00003 * 0.02562 * 1 2 3 30 30 H 1.08004 * 119.99710 * 179.97438 * 2 1 3 31 31 H 1.09000 * 109.46841 * 4.99730 * 3 2 1 32 32 H 1.08997 * 109.47232 * 244.99957 * 3 2 1 33 33 H 1.09002 * 109.47445 * 30.00040 * 5 4 3 34 34 H 1.09001 * 109.46706 * 150.00146 * 5 4 3 35 35 H 1.07995 * 119.99589 * 305.00453 * 6 5 4 36 36 H 1.08001 * 119.99960 * 179.97438 * 7 6 5 37 37 H 1.08007 * 120.00216 * 0.02562 * 7 6 5 38 38 H 0.97005 * 120.00372 * 355.16089 * 10 8 4 39 39 H 1.09005 * 109.46354 * 54.43735 * 13 11 10 40 40 H 1.08995 * 109.47207 * 174.43569 * 13 11 10 41 41 H 0.97000 * 119.99678 * 179.97438 * 17 16 14 42 42 H 1.07999 * 120.00138 * 359.97438 * 23 22 11 43 43 H 1.08004 * 119.99781 * 180.27284 * 24 23 22 44 44 H 1.07997 * 119.99750 * 179.82981 * 25 24 23 45 45 H 1.07997 * 119.99804 * 179.97438 * 26 25 24 46 46 H 1.07998 * 120.00317 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9937 1.3319 1.1315 5 6 2.5587 1.8650 2.4248 6 6 2.8442 3.3437 2.4804 7 6 1.8791 4.1874 2.7502 8 6 4.2496 0.8661 0.9825 9 8 4.6105 0.4232 -0.0907 10 7 5.1071 0.8958 2.0220 11 6 6.4364 0.2940 1.8924 12 1 6.8304 0.4943 0.8960 13 6 7.3733 0.8959 2.9416 14 6 7.5811 2.3595 2.6490 15 1 7.1583 2.7971 1.7567 16 6 8.3112 3.1399 3.5202 17 7 8.4930 4.4171 3.2646 18 14 9.0422 2.3830 5.0635 19 1 10.4059 1.8749 4.7677 20 1 9.1183 3.4122 6.1314 21 1 8.1836 1.2601 5.5187 22 6 6.3366 -1.1948 2.1031 23 6 5.5091 -1.6993 3.0889 24 6 5.4140 -3.0653 3.2793 25 6 6.1534 -3.9262 2.4900 26 6 6.9849 -3.4215 1.5077 27 6 7.0765 -2.0558 1.3143 28 1 -0.5401 -0.9353 -0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8500 -0.9354 0.0004 31 1 1.3586 2.1316 0.0895 32 1 2.6214 1.4025 -0.9313 33 1 1.4886 1.6967 2.5459 34 1 3.0988 1.3603 3.2260 35 1 3.8443 3.7078 2.2976 36 1 2.0837 5.2471 2.7904 37 1 0.8789 3.8232 2.9333 38 1 4.8440 1.3158 2.8559 39 1 6.9309 0.7825 3.9314 40 1 8.3327 0.3794 2.9111 41 1 9.0063 4.9661 3.8777 42 1 4.9345 -1.0265 3.7082 43 1 4.7642 -3.4596 4.0465 44 1 6.0813 -4.9932 2.6406 45 1 7.5628 -4.0941 0.8914 46 1 7.7258 -1.6614 0.5467 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000160568978.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:09 Heat of formation + Delta-G solvation = 42.342183 kcal Electronic energy + Delta-G solvation = -26532.419044 eV Core-core repulsion = 23002.365559 eV Total energy + Delta-G solvation = -3530.053485 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.09615 -38.81352 -36.44963 -35.28624 -34.27569 -32.66290 -32.28568 -30.91005 -30.49169 -29.28007 -26.96237 -25.61486 -24.41963 -22.29208 -21.75409 -20.77007 -20.04024 -19.81274 -19.22539 -17.61103 -17.07660 -16.61688 -16.17551 -15.47797 -15.00392 -14.87277 -14.79138 -14.42085 -14.31393 -13.68054 -13.45865 -13.31111 -13.13515 -13.06543 -12.80150 -12.56059 -12.37341 -12.16761 -11.92861 -11.65715 -11.41405 -11.34147 -11.13715 -11.07356 -10.71639 -10.65261 -10.09894 -9.85789 -9.76857 -9.45842 -9.34984 -9.32260 -8.66988 -8.62733 -8.58172 -8.32944 -8.19670 -6.11048 -4.10419 1.70155 1.73412 2.05636 2.31983 3.23330 3.26819 3.33696 3.35507 3.67453 4.11609 4.37745 4.41656 4.86795 5.02061 5.04692 5.11413 5.19784 5.20594 5.22701 5.29956 5.39782 5.43161 5.47532 5.62001 5.78814 5.84099 5.86716 5.89788 6.01422 6.04425 6.25138 6.32274 6.41962 6.46483 6.55196 6.69979 6.74434 6.76217 6.78535 6.86337 6.91258 6.95404 7.06249 7.25298 7.33472 7.45490 7.65531 8.41800 8.47132 8.95428 9.09374 9.49852 11.01686 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.008681 B = 0.005947 C = 0.003967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3224.646801 B = 4706.860868 C = 7056.175379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.155 4.155 3 C 0.160 3.840 4 N -0.626 5.626 5 C 0.140 3.860 6 C -0.169 4.169 7 C -0.185 4.185 8 C 0.708 3.292 9 O -0.592 6.592 10 N -0.716 5.716 11 C 0.211 3.789 12 H 0.090 0.910 13 C -0.015 4.015 14 C -0.517 4.517 15 H 0.076 0.924 16 C 0.071 3.929 17 N -0.898 5.898 18 Si 0.873 3.127 19 H -0.276 1.276 20 H -0.288 1.288 21 H -0.265 1.265 22 C -0.075 4.075 23 C -0.108 4.108 24 C -0.126 4.126 25 C -0.134 4.134 26 C -0.123 4.123 27 C -0.106 4.106 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.109 0.891 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.121 0.879 36 H 0.099 0.901 37 H 0.093 0.907 38 H 0.397 0.603 39 H 0.024 0.976 40 H 0.030 0.970 41 H 0.263 0.737 42 H 0.115 0.885 43 H 0.114 0.886 44 H 0.114 0.886 45 H 0.116 0.884 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.917 -9.612 -0.265 16.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.175 4.175 3 C 0.037 3.963 4 N -0.362 5.362 5 C 0.016 3.984 6 C -0.188 4.188 7 C -0.223 4.223 8 C 0.409 3.591 9 O -0.471 6.471 10 N -0.369 5.369 11 C 0.106 3.894 12 H 0.108 0.892 13 C -0.053 4.053 14 C -0.555 4.555 15 H 0.094 0.906 16 C -0.130 4.130 17 N -0.536 5.536 18 Si 0.701 3.299 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.190 1.190 22 C -0.077 4.077 23 C -0.126 4.126 24 C -0.144 4.144 25 C -0.152 4.152 26 C -0.141 4.141 27 C -0.125 4.125 28 H 0.113 0.887 29 H 0.113 0.887 30 H 0.127 0.873 31 H 0.095 0.905 32 H 0.110 0.890 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.139 0.861 36 H 0.117 0.883 37 H 0.111 0.889 38 H 0.233 0.767 39 H 0.042 0.958 40 H 0.048 0.952 41 H 0.073 0.927 42 H 0.133 0.867 43 H 0.132 0.868 44 H 0.132 0.868 45 H 0.134 0.866 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -13.527 -9.775 -0.976 16.718 hybrid contribution 0.333 -0.026 1.371 1.411 sum -13.194 -9.801 0.395 16.441 Atomic orbital electron populations 1.23785 0.95691 1.01639 1.02156 1.23462 0.95951 0.99722 0.98329 1.20336 0.91237 0.94378 0.90316 1.47059 1.11126 1.66299 1.11711 1.20578 1.00558 0.91523 0.85696 1.23575 1.00707 0.95445 0.99113 1.23795 0.98029 0.99494 1.01002 1.15916 0.80189 0.78505 0.84449 1.90868 1.76830 1.53422 1.25954 1.45193 1.15056 1.61571 1.15105 1.19816 0.81869 0.85400 1.02331 0.89182 1.19891 0.94281 0.97427 0.93668 1.21009 1.33738 0.91304 1.09474 0.90597 1.24973 0.95650 0.94655 0.97756 1.69906 1.40677 1.05662 1.37401 0.86887 0.80250 0.79258 0.83528 1.20213 1.21401 1.18956 1.20632 0.95427 0.97053 0.94568 1.20900 0.98975 0.94880 0.97848 1.21039 0.99978 0.93596 0.99770 1.21001 0.98127 0.99082 0.97005 1.21055 0.99309 0.95266 0.98439 1.21039 0.99337 0.93009 0.99078 0.88654 0.88655 0.87303 0.90503 0.88956 0.90122 0.89938 0.86058 0.88312 0.88886 0.76661 0.95760 0.95231 0.92687 0.86729 0.86788 0.86838 0.86551 0.86020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.86 14.32 29.01 0.42 -1.44 16 2 C -0.16 -1.85 9.85 -36.03 -0.35 -2.20 16 3 C 0.16 2.07 5.84 -5.19 -0.03 2.04 16 4 N -0.63 -9.16 2.44 -182.19 -0.44 -9.60 16 5 C 0.14 1.69 5.56 -5.19 -0.03 1.66 16 6 C -0.17 -2.20 9.85 -36.02 -0.35 -2.56 16 7 C -0.19 -2.04 14.32 29.02 0.42 -1.62 16 8 C 0.71 13.11 8.18 -86.92 -0.71 12.40 16 9 O -0.59 -12.98 15.62 5.29 0.08 -12.90 16 10 N -0.72 -13.13 3.93 -59.81 -0.23 -13.36 16 11 C 0.21 4.23 2.11 -69.08 -0.15 4.08 16 12 H 0.09 2.01 7.49 -51.93 -0.39 1.63 16 13 C -0.02 -0.34 3.56 -27.88 -0.10 -0.43 16 14 C -0.52 -13.75 9.40 -34.44 -0.32 -14.07 16 15 H 0.08 2.24 7.99 -52.49 -0.42 1.82 16 16 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 17 N -0.90 -26.54 13.96 55.43 0.77 -25.77 16 18 Si 0.87 20.70 27.57 -169.99 -4.69 16.02 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.26 -5.98 6.40 56.52 0.36 -5.62 16 22 C -0.08 -1.36 4.86 -104.62 -0.51 -1.86 16 23 C -0.11 -1.75 9.32 -39.58 -0.37 -2.11 16 24 C -0.13 -1.79 10.05 -39.58 -0.40 -2.19 16 25 C -0.13 -1.83 10.05 -39.58 -0.40 -2.23 16 26 C -0.12 -1.78 10.05 -39.58 -0.40 -2.17 16 27 C -0.11 -1.78 9.67 -39.58 -0.38 -2.17 16 28 H 0.10 0.81 8.06 -52.49 -0.42 0.39 16 29 H 0.10 0.78 7.84 -52.49 -0.41 0.37 16 30 H 0.11 1.48 8.06 -52.48 -0.42 1.06 16 31 H 0.08 0.82 7.72 -51.93 -0.40 0.42 16 32 H 0.09 1.36 7.42 -51.93 -0.39 0.97 16 33 H 0.08 0.80 7.72 -51.93 -0.40 0.40 16 34 H 0.08 0.97 6.45 -51.93 -0.33 0.64 16 35 H 0.12 1.96 8.06 -52.49 -0.42 1.53 16 36 H 0.10 1.07 8.06 -52.49 -0.42 0.65 16 37 H 0.09 0.84 7.84 -52.48 -0.41 0.42 16 38 H 0.40 6.82 6.38 -40.82 -0.26 6.56 16 39 H 0.02 0.53 6.86 -51.93 -0.36 0.18 16 40 H 0.03 0.67 7.81 -51.93 -0.41 0.26 16 41 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 42 H 0.11 1.74 7.73 -52.49 -0.41 1.33 16 43 H 0.11 1.33 8.06 -52.48 -0.42 0.91 16 44 H 0.11 1.24 8.06 -52.49 -0.42 0.81 16 45 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 46 H 0.12 1.96 8.04 -52.49 -0.42 1.54 16 LS Contribution 388.58 15.07 5.86 5.86 Total: -1.00 -31.54 388.58 -9.56 -41.10 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: -7.14 Total: 11.66 kcal Atomic # 6 Polarization: -9.23 SS G_CDS: -3.77 Total: -13.00 kcal Atomic # 7 Polarization: -48.82 SS G_CDS: 0.09 Total: -48.73 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: 0.08 Total: -12.90 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -4.69 Total: 16.02 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.54 -9.56 -41.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160568978.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.441 kcal (2) G-P(sol) polarization free energy of solvation -31.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds