Wall clock time and date at job start Tue Mar 31 2020 10:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50697 * 120.00365 * 2 1 4 4 N 1.46501 * 109.47248 * 124.99364 * 3 2 1 5 5 C 1.46496 * 119.99985 * 270.00134 * 4 3 2 6 6 C 1.50706 * 109.47284 * 269.99979 * 5 4 3 7 7 C 1.30997 * 119.99862 * 124.99962 * 6 5 4 8 8 C 1.34777 * 119.99702 * 90.00245 * 4 3 2 9 9 O 1.21583 * 119.99968 * 359.97438 * 8 4 3 10 10 N 1.34775 * 119.99683 * 179.72597 * 8 4 3 11 11 C 1.46497 * 119.99932 * 175.16423 * 10 8 4 12 12 H 1.09001 * 109.47244 * 38.65157 * 11 10 8 13 13 C 1.53004 * 109.47535 * 158.64863 * 11 10 8 14 14 C 1.50700 * 109.46940 * 294.44624 * 13 11 10 15 15 H 1.07997 * 120.00143 * 355.12256 * 14 13 11 16 16 C 1.37882 * 119.99802 * 175.13804 * 14 13 11 17 17 N 1.31513 * 119.99776 * 179.97438 * 16 14 13 18 18 Si 1.86791 * 119.99931 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.47420 * 90.00388 * 18 16 14 20 20 H 1.48503 * 109.47142 * 210.00582 * 18 16 14 21 21 H 1.48505 * 109.47256 * 330.00267 * 18 16 14 22 22 C 1.50697 * 109.47414 * 278.65035 * 11 10 8 23 23 C 1.38237 * 119.99584 * 319.72982 * 22 11 10 24 24 C 1.38243 * 119.99762 * 179.78423 * 23 22 11 25 25 C 1.38234 * 119.99896 * 0.44082 * 24 23 22 26 26 C 1.38239 * 120.00232 * 359.81028 * 25 24 23 27 27 C 1.38233 * 119.99848 * 359.97438 * 26 25 24 28 28 H 1.08002 * 120.00291 * 179.97438 * 1 2 3 29 29 H 1.08001 * 120.00003 * 0.02562 * 1 2 3 30 30 H 1.08004 * 119.99710 * 179.97438 * 2 1 3 31 31 H 1.09000 * 109.46841 * 4.99730 * 3 2 1 32 32 H 1.08997 * 109.47232 * 244.99957 * 3 2 1 33 33 H 1.09002 * 109.47445 * 30.00040 * 5 4 3 34 34 H 1.09001 * 109.46706 * 150.00146 * 5 4 3 35 35 H 1.07995 * 119.99589 * 305.00453 * 6 5 4 36 36 H 1.08001 * 119.99960 * 179.97438 * 7 6 5 37 37 H 1.08007 * 120.00216 * 0.02562 * 7 6 5 38 38 H 0.97005 * 120.00372 * 355.16089 * 10 8 4 39 39 H 1.09005 * 109.46354 * 54.43735 * 13 11 10 40 40 H 1.08995 * 109.47207 * 174.43569 * 13 11 10 41 41 H 0.97000 * 119.99678 * 179.97438 * 17 16 14 42 42 H 1.07999 * 120.00138 * 359.97438 * 23 22 11 43 43 H 1.08004 * 119.99781 * 180.27284 * 24 23 22 44 44 H 1.07997 * 119.99750 * 179.82981 * 25 24 23 45 45 H 1.07997 * 119.99804 * 179.97438 * 26 25 24 46 46 H 1.07998 * 120.00317 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 7 2.9937 1.3319 1.1315 5 6 2.5587 1.8650 2.4248 6 6 2.8442 3.3437 2.4804 7 6 1.8791 4.1874 2.7502 8 6 4.2496 0.8661 0.9825 9 8 4.6105 0.4232 -0.0907 10 7 5.1071 0.8958 2.0220 11 6 6.4364 0.2940 1.8924 12 1 6.8304 0.4943 0.8960 13 6 7.3733 0.8959 2.9416 14 6 7.5811 2.3595 2.6490 15 1 7.1583 2.7971 1.7567 16 6 8.3112 3.1399 3.5202 17 7 8.4930 4.4171 3.2646 18 14 9.0422 2.3830 5.0635 19 1 10.4059 1.8749 4.7677 20 1 9.1183 3.4122 6.1314 21 1 8.1836 1.2601 5.5187 22 6 6.3366 -1.1948 2.1031 23 6 5.5091 -1.6993 3.0889 24 6 5.4140 -3.0653 3.2793 25 6 6.1534 -3.9262 2.4900 26 6 6.9849 -3.4215 1.5077 27 6 7.0765 -2.0558 1.3143 28 1 -0.5401 -0.9353 -0.0004 29 1 -0.5400 0.9353 -0.0004 30 1 1.8500 -0.9354 0.0004 31 1 1.3586 2.1316 0.0895 32 1 2.6214 1.4025 -0.9313 33 1 1.4886 1.6967 2.5459 34 1 3.0988 1.3603 3.2260 35 1 3.8443 3.7078 2.2976 36 1 2.0837 5.2471 2.7904 37 1 0.8789 3.8232 2.9333 38 1 4.8440 1.3158 2.8559 39 1 6.9309 0.7825 3.9314 40 1 8.3327 0.3794 2.9111 41 1 9.0063 4.9661 3.8777 42 1 4.9345 -1.0265 3.7082 43 1 4.7642 -3.4596 4.0465 44 1 6.0813 -4.9932 2.6406 45 1 7.5628 -4.0941 0.8914 46 1 7.7258 -1.6614 0.5467 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160568978.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:48:08 Heat of formation + Delta-G solvation = 25.410975 kcal Electronic energy + Delta-G solvation = -26533.153236 eV Core-core repulsion = 23002.365559 eV Total energy + Delta-G solvation = -3530.787677 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.48061 -40.03371 -37.69085 -36.80556 -35.32430 -34.60563 -33.48905 -32.21415 -31.67771 -30.97101 -27.98790 -27.05215 -25.80529 -23.59215 -23.27149 -22.02459 -21.18934 -20.96498 -20.50084 -19.08229 -18.82136 -17.94542 -17.44247 -16.68905 -16.38245 -16.20151 -16.04811 -15.79769 -15.66711 -15.10452 -14.77119 -14.62802 -14.25910 -14.24645 -14.17110 -14.05363 -13.75725 -13.57455 -13.18441 -12.99566 -12.87804 -12.53991 -12.41908 -12.34383 -12.05935 -11.92054 -11.73378 -11.69854 -11.42183 -11.21216 -10.77890 -10.47685 -10.28432 -10.12965 -9.76268 -9.59812 -9.46838 -8.27572 -6.32324 0.49603 0.55780 1.10305 1.37369 1.38186 1.39672 1.49091 2.02230 2.22755 2.35672 2.91398 3.05817 3.16606 3.91323 3.95481 4.02636 4.05210 4.11073 4.17796 4.20301 4.31752 4.35234 4.40680 4.53832 4.59085 4.71494 4.72914 4.75592 4.79970 5.02726 5.04474 5.06033 5.14779 5.17436 5.24986 5.39464 5.54735 5.60159 5.64217 5.65702 5.69801 5.72243 5.82789 5.85067 5.92331 6.01281 6.17956 6.27056 6.73685 7.04183 7.31400 7.64511 8.88871 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.008681 B = 0.005947 C = 0.003967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3224.646801 B = 4706.860868 C = 7056.175379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.183 4.183 3 C 0.160 3.840 4 N -0.619 5.619 5 C 0.143 3.857 6 C -0.197 4.197 7 C -0.156 4.156 8 C 0.702 3.298 9 O -0.636 6.636 10 N -0.713 5.713 11 C 0.221 3.779 12 H 0.050 0.950 13 C -0.004 4.004 14 C -0.516 4.516 15 H 0.027 0.973 16 C 0.014 3.986 17 N -0.947 5.947 18 Si 0.944 3.056 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.241 1.241 22 C -0.099 4.099 23 C -0.118 4.118 24 C -0.123 4.123 25 C -0.127 4.127 26 C -0.123 4.123 27 C -0.131 4.131 28 H 0.110 0.890 29 H 0.118 0.882 30 H 0.083 0.917 31 H 0.107 0.893 32 H 0.062 0.938 33 H 0.117 0.883 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.097 0.903 37 H 0.128 0.872 38 H 0.402 0.598 39 H 0.038 0.962 40 H 0.030 0.970 41 H 0.265 0.735 42 H 0.120 0.880 43 H 0.147 0.853 44 H 0.151 0.849 45 H 0.143 0.857 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.649 -12.171 2.159 20.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.203 4.203 3 C 0.038 3.962 4 N -0.354 5.354 5 C 0.021 3.979 6 C -0.217 4.217 7 C -0.193 4.193 8 C 0.403 3.597 9 O -0.518 6.518 10 N -0.367 5.367 11 C 0.115 3.885 12 H 0.068 0.932 13 C -0.042 4.042 14 C -0.554 4.554 15 H 0.045 0.955 16 C -0.183 4.183 17 N -0.588 5.588 18 Si 0.767 3.233 19 H -0.198 1.198 20 H -0.210 1.210 21 H -0.164 1.164 22 C -0.100 4.100 23 C -0.137 4.137 24 C -0.141 4.141 25 C -0.145 4.145 26 C -0.141 4.141 27 C -0.149 4.149 28 H 0.128 0.872 29 H 0.137 0.863 30 H 0.101 0.899 31 H 0.125 0.875 32 H 0.080 0.920 33 H 0.135 0.865 34 H 0.101 0.899 35 H 0.094 0.906 36 H 0.116 0.884 37 H 0.146 0.854 38 H 0.239 0.761 39 H 0.056 0.944 40 H 0.048 0.952 41 H 0.074 0.926 42 H 0.138 0.862 43 H 0.165 0.835 44 H 0.168 0.832 45 H 0.161 0.839 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -16.303 -12.333 1.461 20.494 hybrid contribution 1.056 0.829 0.506 1.435 sum -15.246 -11.504 1.967 19.201 Atomic orbital electron populations 1.24033 0.94474 1.03398 0.97649 1.23134 0.96740 0.97911 1.02486 1.20455 0.90982 0.96336 0.88448 1.47154 1.09848 1.65035 1.13380 1.20749 1.02521 0.90516 0.84153 1.23313 0.99298 0.96555 1.02532 1.24029 0.98820 0.99097 0.97388 1.16126 0.81387 0.78502 0.83680 1.90821 1.78016 1.55447 1.27481 1.45053 1.14547 1.61666 1.15391 1.19406 0.82132 0.87646 0.99267 0.93221 1.19734 0.95034 0.94446 0.94959 1.21133 1.33005 0.93619 1.07659 0.95492 1.25871 0.96085 0.94907 1.01482 1.70068 1.42101 1.07490 1.39105 0.85762 0.79603 0.78987 0.78905 1.19789 1.21018 1.16414 1.20422 0.97683 0.95258 0.96671 1.21046 0.98738 0.96360 0.97524 1.21428 0.99894 0.92550 1.00198 1.21469 0.96495 1.00966 0.95567 1.21376 0.99499 0.94276 0.98922 1.21165 0.99879 0.94510 0.99364 0.87193 0.86348 0.89868 0.87534 0.91968 0.86456 0.89941 0.90641 0.88430 0.85379 0.76087 0.94398 0.95190 0.92565 0.86160 0.83536 0.83150 0.83947 0.87057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.49 14.32 67.78 0.97 -1.52 16 2 C -0.18 -4.20 9.85 25.65 0.25 -3.95 16 3 C 0.16 4.15 5.84 85.63 0.50 4.65 16 4 N -0.62 -18.66 2.44 -848.58 -2.07 -20.73 16 5 C 0.14 3.33 5.56 85.64 0.48 3.80 16 6 C -0.20 -5.18 9.85 25.65 0.25 -4.93 16 7 C -0.16 -3.11 14.32 67.78 0.97 -2.14 16 8 C 0.70 27.89 8.18 179.05 1.46 29.36 16 9 O -0.64 -30.34 15.62 -3.98 -0.06 -30.40 16 10 N -0.71 -27.99 3.93 -461.42 -1.81 -29.80 16 11 C 0.22 9.50 2.11 44.25 0.09 9.60 16 12 H 0.05 2.48 7.49 -2.39 -0.02 2.47 16 13 C 0.00 -0.19 3.56 29.85 0.11 -0.08 16 14 C -0.52 -29.12 9.40 25.60 0.24 -28.88 16 15 H 0.03 1.74 7.99 -2.91 -0.02 1.71 16 16 C 0.01 0.79 5.47 84.66 0.46 1.25 16 17 N -0.95 -58.55 13.96 21.45 0.30 -58.25 16 18 Si 0.94 43.02 27.57 68.60 1.89 44.91 16 19 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 20 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 21 H -0.24 -9.97 6.40 99.48 0.64 -9.34 16 22 C -0.10 -3.66 4.86 -19.87 -0.10 -3.75 16 23 C -0.12 -3.71 9.32 22.27 0.21 -3.51 16 24 C -0.12 -3.11 10.05 22.27 0.22 -2.89 16 25 C -0.13 -3.02 10.05 22.27 0.22 -2.80 16 26 C -0.12 -3.35 10.05 22.27 0.22 -3.12 16 27 C -0.13 -4.50 9.67 22.27 0.22 -4.29 16 28 H 0.11 1.46 8.06 -2.91 -0.02 1.43 16 29 H 0.12 1.36 7.84 -2.91 -0.02 1.34 16 30 H 0.08 2.33 8.06 -2.91 -0.02 2.31 16 31 H 0.11 2.07 7.72 -2.39 -0.02 2.05 16 32 H 0.06 1.97 7.42 -2.39 -0.02 1.95 16 33 H 0.12 1.90 7.72 -2.39 -0.02 1.88 16 34 H 0.08 1.91 6.45 -2.39 -0.02 1.89 16 35 H 0.08 2.68 8.06 -2.91 -0.02 2.66 16 36 H 0.10 1.98 8.06 -2.91 -0.02 1.96 16 37 H 0.13 1.71 7.84 -2.91 -0.02 1.69 16 38 H 0.40 14.61 6.38 -92.70 -0.59 14.02 16 39 H 0.04 1.65 6.86 -2.38 -0.02 1.64 16 40 H 0.03 1.39 7.81 -2.39 -0.02 1.37 16 41 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 42 H 0.12 3.52 7.73 -2.91 -0.02 3.49 16 43 H 0.15 2.73 8.06 -2.91 -0.02 2.71 16 44 H 0.15 2.49 8.06 -2.91 -0.02 2.46 16 45 H 0.14 3.04 8.06 -2.91 -0.02 3.02 16 46 H 0.11 3.90 8.04 -2.91 -0.02 3.87 16 Total: -1.00 -75.18 388.58 5.32 -69.85 By element: Atomic # 1 Polarization: 37.32 SS G_CDS: 0.29 Total: 37.60 kcal Atomic # 6 Polarization: -19.98 SS G_CDS: 6.79 Total: -13.19 kcal Atomic # 7 Polarization: -105.19 SS G_CDS: -3.58 Total: -108.78 kcal Atomic # 8 Polarization: -30.34 SS G_CDS: -0.06 Total: -30.40 kcal Atomic # 14 Polarization: 43.02 SS G_CDS: 1.89 Total: 44.91 kcal Total: -75.18 5.32 -69.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160568978.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.265 kcal (2) G-P(sol) polarization free energy of solvation -75.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds