Wall clock time and date at job start Tue Mar 31 2020 10:26:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53007 * 1
3 3 C 1.52999 * 109.46852 * 2 1
4 4 H 1.09001 * 109.47339 * 55.00145 * 3 2 1
5 5 C 1.50697 * 109.47299 * 175.00295 * 3 2 1
6 6 H 1.07991 * 120.00449 * 119.72229 * 5 3 2
7 7 C 1.37885 * 119.99686 * 300.00060 * 5 3 2
8 8 N 1.31516 * 119.99913 * 359.72095 * 7 5 3
9 9 Si 1.86798 * 119.99766 * 179.72528 * 7 5 3
10 10 H 1.48498 * 109.47416 * 59.99812 * 9 7 5
11 11 H 1.48508 * 109.46609 * 180.02562 * 9 7 5
12 12 H 1.48503 * 109.46903 * 299.99397 * 9 7 5
13 13 N 1.46507 * 109.47144 * 295.00275 * 3 2 1
14 14 C 1.34773 * 120.00337 * 85.00358 * 13 3 2
15 15 O 1.21285 * 119.99653 * 359.97438 * 14 13 3
16 16 C 1.50698 * 120.00176 * 180.02562 * 14 13 3
17 17 C 1.50696 * 109.46967 * 179.97438 * 16 14 13
18 18 C 1.34242 * 126.49738 * 265.02045 * 17 16 14
19 19 N 1.36837 * 109.92927 * 179.97438 * 18 17 16
20 20 C 1.46499 * 125.06078 * 179.97438 * 19 18 17
21 21 C 1.53001 * 109.47399 * 265.02773 * 20 19 18
22 22 C 1.37683 * 109.87254 * 0.02562 * 19 18 17
23 23 C 1.39121 * 133.50609 * 180.02562 * 22 19 18
24 24 C 1.37751 * 119.78118 * 179.30089 * 23 22 19
25 25 C 1.38834 * 120.66193 * 0.55002 * 24 23 22
26 26 C 1.36623 * 120.52954 * 359.66223 * 25 24 23
27 27 C 1.39634 * 119.76372 * 359.97438 * 26 25 24
28 28 H 1.08996 * 109.46556 * 180.02562 * 1 2 3
29 29 H 1.09004 * 109.47079 * 299.99653 * 1 2 3
30 30 H 1.09002 * 109.47338 * 59.99974 * 1 2 3
31 31 H 1.08999 * 109.46664 * 240.00133 * 2 1 3
32 32 H 1.08991 * 109.47269 * 119.99497 * 2 1 3
33 33 H 0.97000 * 119.99651 * 180.02562 * 8 7 5
34 34 H 0.96999 * 119.99253 * 265.00221 * 13 3 2
35 35 H 1.09003 * 109.46719 * 299.99416 * 16 14 13
36 36 H 1.08991 * 109.47126 * 59.99074 * 16 14 13
37 37 H 1.07999 * 125.03819 * 359.97438 * 18 17 16
38 38 H 1.08998 * 109.46950 * 25.03310 * 20 19 18
39 39 H 1.09002 * 109.47048 * 145.02459 * 20 19 18
40 40 H 1.08999 * 109.46958 * 180.02562 * 21 20 19
41 41 H 1.09001 * 109.46793 * 299.99612 * 21 20 19
42 42 H 1.08995 * 109.47316 * 60.00225 * 21 20 19
43 43 H 1.08000 * 120.11395 * 359.97282 * 23 22 19
44 44 H 1.07997 * 119.67173 * 180.18990 * 24 23 22
45 45 H 1.07998 * 119.73674 * 179.64738 * 25 24 23
46 46 H 1.07998 * 120.12088 * 179.97438 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.6054 1.9816 0.8418
5 6 3.5419 1.4444 0.1238
6 1 4.1473 1.8850 -0.6544
7 6 4.1433 0.8785 1.2279
8 7 3.4060 0.3419 2.1757
9 14 6.0053 0.8740 1.3777
10 1 6.5056 2.2722 1.3738
11 1 6.3981 0.2106 2.6470
12 1 6.5923 0.1349 0.2312
13 7 1.6523 2.0975 -1.2518
14 6 0.4351 2.6645 -1.3670
15 8 -0.3396 2.6320 -0.4343
16 6 0.0361 3.3377 -2.6548
17 6 -1.3617 3.8852 -2.5234
18 6 -2.4964 3.2774 -2.9044
19 7 -3.5705 4.0783 -2.6265
20 6 -4.9679 3.7391 -2.9064
21 6 -5.3769 4.3341 -4.2553
22 6 -3.1422 5.2508 -2.0457
23 6 -3.8000 6.3837 -1.5773
24 6 -3.0753 7.4145 -1.0205
25 6 -1.6918 7.3401 -0.9318
26 6 -1.0252 6.2389 -1.3895
27 6 -1.7406 5.1791 -1.9507
28 1 -0.3632 -1.0277 0.0005
29 1 -0.3633 0.5138 0.8900
30 1 -0.3634 0.5138 -0.8900
31 1 1.8933 -0.5138 -0.8900
32 1 1.8934 -0.5137 0.8899
33 1 3.8292 -0.0558 2.9526
34 1 2.2719 2.1232 -1.9978
35 1 0.7275 4.1530 -2.8679
36 1 0.0672 2.6131 -3.4684
37 1 -2.5531 2.3009 -3.3624
38 1 -5.0793 2.6553 -2.9385
39 1 -5.6050 4.1466 -2.1214
40 1 -6.4168 4.0820 -4.4633
41 1 -5.2656 5.4179 -4.2231
42 1 -4.7399 3.9265 -5.0403
43 1 -4.8761 6.4502 -1.6400
44 1 -3.5880 8.2917 -0.6546
45 1 -1.1381 8.1594 -0.4976
46 1 0.0512 6.1882 -1.3176
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000183840306.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:26:39
Heat of formation + Delta-G solvation = -6.434755 kcal
Electronic energy + Delta-G solvation = -26066.995517 eV
Core-core repulsion = 22534.826906 eV
Total energy + Delta-G solvation = -3532.168611 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 314.174 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-42.27102 -40.41224 -37.99302 -36.90565 -35.15196 -34.22056 -32.98227 -32.16308
-31.03236 -29.91374 -29.01488 -27.57647 -24.98069 -24.32759 -23.33986 -22.49002
-21.80348 -21.04696 -20.33095 -18.80333 -17.75425 -17.45435 -17.32230 -17.02210
-16.35235 -16.16681 -15.94554 -15.79453 -15.26418 -14.87696 -14.67466 -14.57865
-14.41189 -14.14429 -13.69581 -13.56709 -13.42419 -13.34837 -13.13924 -13.00241
-12.84334 -12.68839 -12.61845 -12.27623 -12.16709 -12.10062 -12.03576 -12.00187
-11.63190 -11.54123 -11.02665 -10.63899 -10.50142 -10.27531 -9.50678 -9.02294
-8.41340 -8.13359 -6.30888 0.26588 0.76385 1.44978 1.47136 1.54675
1.72473 1.96946 2.05418 2.40489 2.87898 3.10052 3.15929 3.76428
3.81950 3.94351 4.07858 4.18300 4.24062 4.31015 4.41203 4.41467
4.48560 4.51446 4.60231 4.66132 4.71319 4.78552 4.80808 4.82531
4.94776 4.98206 5.05336 5.10338 5.22954 5.29047 5.30653 5.48275
5.59580 5.61350 5.70779 5.75987 5.84447 5.89181 5.93786 6.01625
6.21611 6.36112 6.52191 6.78811 7.15759 7.37246 7.77119 8.91480
Molecular weight = 314.17amu
Principal moments of inertia in cm(-1)
A = 0.019563 B = 0.003206 C = 0.002942
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1430.913123 B = 8732.520239 C = 9516.168987
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.120 4.120
2 C -0.119 4.119
3 C 0.281 3.719
4 H -0.009 1.009
5 C -0.548 4.548
6 H 0.071 0.929
7 C 0.014 3.986
8 N -0.917 5.917
9 Si 0.969 3.031
10 H -0.272 1.272
11 H -0.287 1.287
12 H -0.263 1.263
13 N -0.711 5.711
14 C 0.498 3.502
15 O -0.582 6.582
16 C -0.054 4.054
17 C -0.174 4.174
18 C 0.062 3.938
19 N -0.483 5.483
20 C 0.100 3.900
21 C -0.161 4.161
22 C 0.079 3.921
23 C -0.135 4.135
24 C -0.108 4.108
25 C -0.157 4.157
26 C -0.094 4.094
27 C -0.121 4.121
28 H 0.044 0.956
29 H 0.018 0.982
30 H 0.048 0.952
31 H 0.042 0.958
32 H 0.068 0.932
33 H 0.264 0.736
34 H 0.403 0.597
35 H 0.106 0.894
36 H 0.126 0.874
37 H 0.190 0.810
38 H 0.104 0.896
39 H 0.090 0.910
40 H 0.095 0.905
41 H 0.051 0.949
42 H 0.058 0.942
43 H 0.139 0.861
44 H 0.152 0.848
45 H 0.136 0.864
46 H 0.109 0.891
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.452 9.052 -14.972 23.342
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.177 4.177
2 C -0.158 4.158
3 C 0.177 3.823
4 H 0.009 0.991
5 C -0.586 4.586
6 H 0.089 0.911
7 C -0.186 4.186
8 N -0.555 5.555
9 Si 0.794 3.206
10 H -0.197 1.197
11 H -0.213 1.213
12 H -0.188 1.188
13 N -0.361 5.361
14 C 0.285 3.715
15 O -0.463 6.463
16 C -0.094 4.094
17 C -0.181 4.181
18 C -0.063 4.063
19 N -0.166 5.166
20 C -0.020 4.020
21 C -0.219 4.219
22 C -0.027 4.027
23 C -0.155 4.155
24 C -0.127 4.127
25 C -0.176 4.176
26 C -0.112 4.112
27 C -0.126 4.126
28 H 0.063 0.937
29 H 0.037 0.963
30 H 0.067 0.933
31 H 0.061 0.939
32 H 0.086 0.914
33 H 0.073 0.927
34 H 0.237 0.763
35 H 0.124 0.876
36 H 0.144 0.856
37 H 0.207 0.793
38 H 0.122 0.878
39 H 0.108 0.892
40 H 0.113 0.887
41 H 0.070 0.930
42 H 0.077 0.923
43 H 0.157 0.843
44 H 0.169 0.831
45 H 0.154 0.846
46 H 0.128 0.872
Dipole moment (debyes) X Y Z Total
from point charges -16.333 8.809 -14.213 23.375
hybrid contribution 1.405 -0.199 0.471 1.496
sum -14.928 8.610 -13.742 22.041
Atomic orbital electron populations
1.21644 0.97001 0.98854 1.00189 1.21762 0.93711 0.99264 1.01110
1.18263 0.93342 0.89059 0.81654 0.99149 1.21597 0.91645 1.38825
1.06525 0.91051 1.25790 1.03295 0.94468 0.95066 1.70061 1.37092
1.38615 1.09746 0.85445 0.79196 0.78417 0.77551 1.19731 1.21286
1.18779 1.46278 1.15858 1.56613 1.17337 1.21277 0.81428 0.78304
0.90497 1.90658 1.52521 1.60572 1.42532 1.19949 0.93537 1.01080
0.94885 1.19793 0.94410 0.95035 1.08896 1.21906 0.84991 0.96970
1.02445 1.44126 1.07239 1.13576 1.51660 1.22004 0.78115 1.02767
0.99162 1.22125 1.03114 1.01104 0.95565 1.18511 0.93194 0.89835
1.01167 1.20293 1.00163 0.92047 1.03009 1.21120 0.93701 0.98872
0.98971 1.20880 0.95301 0.98550 1.02856 1.20440 0.99475 0.93194
0.98133 1.19379 0.93256 0.95909 1.04021 0.93745 0.96258 0.93330
0.93916 0.91406 0.92718 0.76280 0.87579 0.85626 0.79306 0.87750
0.89161 0.88674 0.92989 0.92304 0.84275 0.83075 0.84588 0.87240
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -5.50 8.51 71.98 0.61 -4.89 16
2 C -0.12 -5.99 5.45 30.60 0.17 -5.83 16
3 C 0.28 14.69 2.24 44.24 0.10 14.79 16
4 H -0.01 -0.59 7.58 -2.39 -0.02 -0.61 16
5 C -0.55 -29.47 8.73 25.60 0.22 -29.24 16
6 H 0.07 3.58 7.74 -2.92 -0.02 3.56 16
7 C 0.01 0.75 5.29 84.66 0.45 1.19 16
8 N -0.92 -53.60 11.31 21.45 0.24 -53.36 16
9 Si 0.97 42.70 29.54 68.60 2.03 44.72 16
10 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16
11 H -0.29 -12.59 7.11 99.48 0.71 -11.89 16
12 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16
13 N -0.71 -29.58 5.02 -446.09 -2.24 -31.82 16
14 C 0.50 19.91 6.39 87.66 0.56 20.47 16
15 O -0.58 -28.81 13.17 -3.05 -0.04 -28.85 16
16 C -0.05 -1.55 6.23 29.10 0.18 -1.37 16
17 C -0.17 -5.36 4.81 -18.63 -0.09 -5.44 16
18 C 0.06 1.62 11.19 83.00 0.93 2.54 16
19 N -0.48 -11.69 2.78 -515.94 -1.43 -13.12 16
20 C 0.10 1.51 6.72 86.38 0.58 2.09 16
21 C -0.16 -1.87 10.24 71.98 0.74 -1.13 16
22 C 0.08 2.26 6.81 39.03 0.27 2.53 16
23 C -0.13 -3.23 10.00 22.37 0.22 -3.00 16
24 C -0.11 -2.47 10.01 22.30 0.22 -2.25 16
25 C -0.16 -4.16 9.97 22.03 0.22 -3.94 16
26 C -0.09 -2.99 10.05 22.23 0.22 -2.77 16
27 C -0.12 -3.99 6.35 -20.20 -0.13 -4.12 16
28 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16
29 H 0.02 0.96 7.85 -2.39 -0.02 0.94 16
30 H 0.05 2.12 5.64 -2.39 -0.01 2.11 16
31 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16
32 H 0.07 3.82 5.96 -2.39 -0.01 3.81 16
33 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16
34 H 0.40 14.00 8.54 -92.71 -0.79 13.21 16
35 H 0.11 2.72 8.14 -2.39 -0.02 2.70 16
36 H 0.13 2.67 8.14 -2.39 -0.02 2.66 16
37 H 0.19 3.63 8.06 -2.91 -0.02 3.60 16
38 H 0.10 1.25 8.12 -2.39 -0.02 1.23 16
39 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16
40 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16
41 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16
42 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16
43 H 0.14 2.47 8.06 -2.91 -0.02 2.44 16
44 H 0.15 2.41 8.06 -2.91 -0.02 2.39 16
45 H 0.14 2.95 8.06 -2.91 -0.02 2.92 16
46 H 0.11 3.48 8.06 -2.91 -0.02 3.46 16
Total: -1.00 -74.87 377.29 4.21 -70.66
By element:
Atomic # 1 Polarization: 31.96 SS G_CDS: 0.18 Total: 32.14 kcal
Atomic # 6 Polarization: -25.85 SS G_CDS: 5.48 Total: -20.37 kcal
Atomic # 7 Polarization: -94.86 SS G_CDS: -3.43 Total: -98.30 kcal
Atomic # 8 Polarization: -28.81 SS G_CDS: -0.04 Total: -28.85 kcal
Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.72 kcal
Total: -74.87 4.21 -70.66 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000183840306.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 64.221 kcal
(2) G-P(sol) polarization free energy of solvation -74.867 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.646 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.211 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.656 kcal
(6) G-S(sol) free energy of system = (1) + (5) -6.435 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds