Wall clock time and date at job start Tue Mar 31 2020 10:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46852 * 2 1 4 4 H 1.09001 * 109.47339 * 55.00145 * 3 2 1 5 5 C 1.50697 * 109.47299 * 175.00295 * 3 2 1 6 6 H 1.07991 * 120.00449 * 119.72229 * 5 3 2 7 7 C 1.37885 * 119.99686 * 300.00060 * 5 3 2 8 8 N 1.31516 * 119.99913 * 359.72095 * 7 5 3 9 9 Si 1.86798 * 119.99766 * 179.72528 * 7 5 3 10 10 H 1.48498 * 109.47416 * 59.99812 * 9 7 5 11 11 H 1.48508 * 109.46609 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.46903 * 299.99397 * 9 7 5 13 13 N 1.46507 * 109.47144 * 295.00275 * 3 2 1 14 14 C 1.34773 * 120.00337 * 85.00358 * 13 3 2 15 15 O 1.21285 * 119.99653 * 359.97438 * 14 13 3 16 16 C 1.50698 * 120.00176 * 180.02562 * 14 13 3 17 17 C 1.50696 * 109.46967 * 179.97438 * 16 14 13 18 18 C 1.34242 * 126.49738 * 265.02045 * 17 16 14 19 19 N 1.36837 * 109.92927 * 179.97438 * 18 17 16 20 20 C 1.46499 * 125.06078 * 179.97438 * 19 18 17 21 21 C 1.53001 * 109.47399 * 265.02773 * 20 19 18 22 22 C 1.37683 * 109.87254 * 0.02562 * 19 18 17 23 23 C 1.39121 * 133.50609 * 180.02562 * 22 19 18 24 24 C 1.37751 * 119.78118 * 179.30089 * 23 22 19 25 25 C 1.38834 * 120.66193 * 0.55002 * 24 23 22 26 26 C 1.36623 * 120.52954 * 359.66223 * 25 24 23 27 27 C 1.39634 * 119.76372 * 359.97438 * 26 25 24 28 28 H 1.08996 * 109.46556 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47079 * 299.99653 * 1 2 3 30 30 H 1.09002 * 109.47338 * 59.99974 * 1 2 3 31 31 H 1.08999 * 109.46664 * 240.00133 * 2 1 3 32 32 H 1.08991 * 109.47269 * 119.99497 * 2 1 3 33 33 H 0.97000 * 119.99651 * 180.02562 * 8 7 5 34 34 H 0.96999 * 119.99253 * 265.00221 * 13 3 2 35 35 H 1.09003 * 109.46719 * 299.99416 * 16 14 13 36 36 H 1.08991 * 109.47126 * 59.99074 * 16 14 13 37 37 H 1.07999 * 125.03819 * 359.97438 * 18 17 16 38 38 H 1.08998 * 109.46950 * 25.03310 * 20 19 18 39 39 H 1.09002 * 109.47048 * 145.02459 * 20 19 18 40 40 H 1.08999 * 109.46958 * 180.02562 * 21 20 19 41 41 H 1.09001 * 109.46793 * 299.99612 * 21 20 19 42 42 H 1.08995 * 109.47316 * 60.00225 * 21 20 19 43 43 H 1.08000 * 120.11395 * 359.97282 * 23 22 19 44 44 H 1.07997 * 119.67173 * 180.18990 * 24 23 22 45 45 H 1.07998 * 119.73674 * 179.64738 * 25 24 23 46 46 H 1.07998 * 120.12088 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1473 1.8850 -0.6544 7 6 4.1433 0.8785 1.2279 8 7 3.4060 0.3419 2.1757 9 14 6.0053 0.8740 1.3777 10 1 6.5056 2.2722 1.3738 11 1 6.3981 0.2106 2.6470 12 1 6.5923 0.1349 0.2312 13 7 1.6523 2.0975 -1.2518 14 6 0.4351 2.6645 -1.3670 15 8 -0.3396 2.6320 -0.4343 16 6 0.0361 3.3377 -2.6548 17 6 -1.3617 3.8852 -2.5234 18 6 -2.4964 3.2774 -2.9044 19 7 -3.5705 4.0783 -2.6265 20 6 -4.9679 3.7391 -2.9064 21 6 -5.3769 4.3341 -4.2553 22 6 -3.1422 5.2508 -2.0457 23 6 -3.8000 6.3837 -1.5773 24 6 -3.0753 7.4145 -1.0205 25 6 -1.6918 7.3401 -0.9318 26 6 -1.0252 6.2389 -1.3895 27 6 -1.7406 5.1791 -1.9507 28 1 -0.3632 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5137 0.8899 33 1 3.8292 -0.0558 2.9526 34 1 2.2719 2.1232 -1.9978 35 1 0.7275 4.1530 -2.8679 36 1 0.0672 2.6131 -3.4684 37 1 -2.5531 2.3009 -3.3624 38 1 -5.0793 2.6553 -2.9385 39 1 -5.6050 4.1466 -2.1214 40 1 -6.4168 4.0820 -4.4633 41 1 -5.2656 5.4179 -4.2231 42 1 -4.7399 3.9265 -5.0403 43 1 -4.8761 6.4502 -1.6400 44 1 -3.5880 8.2917 -0.6546 45 1 -1.1381 8.1594 -0.4976 46 1 0.0512 6.1882 -1.3176 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183840306.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:26:39 Heat of formation + Delta-G solvation = -6.434755 kcal Electronic energy + Delta-G solvation = -26066.995517 eV Core-core repulsion = 22534.826906 eV Total energy + Delta-G solvation = -3532.168611 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.27102 -40.41224 -37.99302 -36.90565 -35.15196 -34.22056 -32.98227 -32.16308 -31.03236 -29.91374 -29.01488 -27.57647 -24.98069 -24.32759 -23.33986 -22.49002 -21.80348 -21.04696 -20.33095 -18.80333 -17.75425 -17.45435 -17.32230 -17.02210 -16.35235 -16.16681 -15.94554 -15.79453 -15.26418 -14.87696 -14.67466 -14.57865 -14.41189 -14.14429 -13.69581 -13.56709 -13.42419 -13.34837 -13.13924 -13.00241 -12.84334 -12.68839 -12.61845 -12.27623 -12.16709 -12.10062 -12.03576 -12.00187 -11.63190 -11.54123 -11.02665 -10.63899 -10.50142 -10.27531 -9.50678 -9.02294 -8.41340 -8.13359 -6.30888 0.26588 0.76385 1.44978 1.47136 1.54675 1.72473 1.96946 2.05418 2.40489 2.87898 3.10052 3.15929 3.76428 3.81950 3.94351 4.07858 4.18300 4.24062 4.31015 4.41203 4.41467 4.48560 4.51446 4.60231 4.66132 4.71319 4.78552 4.80808 4.82531 4.94776 4.98206 5.05336 5.10338 5.22954 5.29047 5.30653 5.48275 5.59580 5.61350 5.70779 5.75987 5.84447 5.89181 5.93786 6.01625 6.21611 6.36112 6.52191 6.78811 7.15759 7.37246 7.77119 8.91480 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.019563 B = 0.003206 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1430.913123 B = 8732.520239 C = 9516.168987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.119 4.119 3 C 0.281 3.719 4 H -0.009 1.009 5 C -0.548 4.548 6 H 0.071 0.929 7 C 0.014 3.986 8 N -0.917 5.917 9 Si 0.969 3.031 10 H -0.272 1.272 11 H -0.287 1.287 12 H -0.263 1.263 13 N -0.711 5.711 14 C 0.498 3.502 15 O -0.582 6.582 16 C -0.054 4.054 17 C -0.174 4.174 18 C 0.062 3.938 19 N -0.483 5.483 20 C 0.100 3.900 21 C -0.161 4.161 22 C 0.079 3.921 23 C -0.135 4.135 24 C -0.108 4.108 25 C -0.157 4.157 26 C -0.094 4.094 27 C -0.121 4.121 28 H 0.044 0.956 29 H 0.018 0.982 30 H 0.048 0.952 31 H 0.042 0.958 32 H 0.068 0.932 33 H 0.264 0.736 34 H 0.403 0.597 35 H 0.106 0.894 36 H 0.126 0.874 37 H 0.190 0.810 38 H 0.104 0.896 39 H 0.090 0.910 40 H 0.095 0.905 41 H 0.051 0.949 42 H 0.058 0.942 43 H 0.139 0.861 44 H 0.152 0.848 45 H 0.136 0.864 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.452 9.052 -14.972 23.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.158 4.158 3 C 0.177 3.823 4 H 0.009 0.991 5 C -0.586 4.586 6 H 0.089 0.911 7 C -0.186 4.186 8 N -0.555 5.555 9 Si 0.794 3.206 10 H -0.197 1.197 11 H -0.213 1.213 12 H -0.188 1.188 13 N -0.361 5.361 14 C 0.285 3.715 15 O -0.463 6.463 16 C -0.094 4.094 17 C -0.181 4.181 18 C -0.063 4.063 19 N -0.166 5.166 20 C -0.020 4.020 21 C -0.219 4.219 22 C -0.027 4.027 23 C -0.155 4.155 24 C -0.127 4.127 25 C -0.176 4.176 26 C -0.112 4.112 27 C -0.126 4.126 28 H 0.063 0.937 29 H 0.037 0.963 30 H 0.067 0.933 31 H 0.061 0.939 32 H 0.086 0.914 33 H 0.073 0.927 34 H 0.237 0.763 35 H 0.124 0.876 36 H 0.144 0.856 37 H 0.207 0.793 38 H 0.122 0.878 39 H 0.108 0.892 40 H 0.113 0.887 41 H 0.070 0.930 42 H 0.077 0.923 43 H 0.157 0.843 44 H 0.169 0.831 45 H 0.154 0.846 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -16.333 8.809 -14.213 23.375 hybrid contribution 1.405 -0.199 0.471 1.496 sum -14.928 8.610 -13.742 22.041 Atomic orbital electron populations 1.21644 0.97001 0.98854 1.00189 1.21762 0.93711 0.99264 1.01110 1.18263 0.93342 0.89059 0.81654 0.99149 1.21597 0.91645 1.38825 1.06525 0.91051 1.25790 1.03295 0.94468 0.95066 1.70061 1.37092 1.38615 1.09746 0.85445 0.79196 0.78417 0.77551 1.19731 1.21286 1.18779 1.46278 1.15858 1.56613 1.17337 1.21277 0.81428 0.78304 0.90497 1.90658 1.52521 1.60572 1.42532 1.19949 0.93537 1.01080 0.94885 1.19793 0.94410 0.95035 1.08896 1.21906 0.84991 0.96970 1.02445 1.44126 1.07239 1.13576 1.51660 1.22004 0.78115 1.02767 0.99162 1.22125 1.03114 1.01104 0.95565 1.18511 0.93194 0.89835 1.01167 1.20293 1.00163 0.92047 1.03009 1.21120 0.93701 0.98872 0.98971 1.20880 0.95301 0.98550 1.02856 1.20440 0.99475 0.93194 0.98133 1.19379 0.93256 0.95909 1.04021 0.93745 0.96258 0.93330 0.93916 0.91406 0.92718 0.76280 0.87579 0.85626 0.79306 0.87750 0.89161 0.88674 0.92989 0.92304 0.84275 0.83075 0.84588 0.87240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.50 8.51 71.98 0.61 -4.89 16 2 C -0.12 -5.99 5.45 30.60 0.17 -5.83 16 3 C 0.28 14.69 2.24 44.24 0.10 14.79 16 4 H -0.01 -0.59 7.58 -2.39 -0.02 -0.61 16 5 C -0.55 -29.47 8.73 25.60 0.22 -29.24 16 6 H 0.07 3.58 7.74 -2.92 -0.02 3.56 16 7 C 0.01 0.75 5.29 84.66 0.45 1.19 16 8 N -0.92 -53.60 11.31 21.45 0.24 -53.36 16 9 Si 0.97 42.70 29.54 68.60 2.03 44.72 16 10 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 11 H -0.29 -12.59 7.11 99.48 0.71 -11.89 16 12 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 13 N -0.71 -29.58 5.02 -446.09 -2.24 -31.82 16 14 C 0.50 19.91 6.39 87.66 0.56 20.47 16 15 O -0.58 -28.81 13.17 -3.05 -0.04 -28.85 16 16 C -0.05 -1.55 6.23 29.10 0.18 -1.37 16 17 C -0.17 -5.36 4.81 -18.63 -0.09 -5.44 16 18 C 0.06 1.62 11.19 83.00 0.93 2.54 16 19 N -0.48 -11.69 2.78 -515.94 -1.43 -13.12 16 20 C 0.10 1.51 6.72 86.38 0.58 2.09 16 21 C -0.16 -1.87 10.24 71.98 0.74 -1.13 16 22 C 0.08 2.26 6.81 39.03 0.27 2.53 16 23 C -0.13 -3.23 10.00 22.37 0.22 -3.00 16 24 C -0.11 -2.47 10.01 22.30 0.22 -2.25 16 25 C -0.16 -4.16 9.97 22.03 0.22 -3.94 16 26 C -0.09 -2.99 10.05 22.23 0.22 -2.77 16 27 C -0.12 -3.99 6.35 -20.20 -0.13 -4.12 16 28 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 29 H 0.02 0.96 7.85 -2.39 -0.02 0.94 16 30 H 0.05 2.12 5.64 -2.39 -0.01 2.11 16 31 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.07 3.82 5.96 -2.39 -0.01 3.81 16 33 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 34 H 0.40 14.00 8.54 -92.71 -0.79 13.21 16 35 H 0.11 2.72 8.14 -2.39 -0.02 2.70 16 36 H 0.13 2.67 8.14 -2.39 -0.02 2.66 16 37 H 0.19 3.63 8.06 -2.91 -0.02 3.60 16 38 H 0.10 1.25 8.12 -2.39 -0.02 1.23 16 39 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.14 2.47 8.06 -2.91 -0.02 2.44 16 44 H 0.15 2.41 8.06 -2.91 -0.02 2.39 16 45 H 0.14 2.95 8.06 -2.91 -0.02 2.92 16 46 H 0.11 3.48 8.06 -2.91 -0.02 3.46 16 Total: -1.00 -74.87 377.29 4.21 -70.66 By element: Atomic # 1 Polarization: 31.96 SS G_CDS: 0.18 Total: 32.14 kcal Atomic # 6 Polarization: -25.85 SS G_CDS: 5.48 Total: -20.37 kcal Atomic # 7 Polarization: -94.86 SS G_CDS: -3.43 Total: -98.30 kcal Atomic # 8 Polarization: -28.81 SS G_CDS: -0.04 Total: -28.85 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.72 kcal Total: -74.87 4.21 -70.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183840306.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.221 kcal (2) G-P(sol) polarization free energy of solvation -74.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds