Wall clock time and date at job start Tue Mar 31 2020 10:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47061 * 2 1 4 4 N 1.46502 * 109.47195 * 179.97438 * 3 2 1 5 5 C 1.46014 * 118.53669 * 90.00042 * 4 3 2 6 6 C 1.52982 * 110.04047 * 161.83935 * 5 4 3 7 7 N 1.47193 * 108.72982 * 50.29089 * 6 5 4 8 8 C 1.46899 * 110.99664 * 167.63160 * 7 6 5 9 9 C 1.53000 * 109.47284 * 306.18243 * 8 7 6 10 10 C 1.53008 * 109.47013 * 186.28088 * 9 8 7 11 11 S 1.81001 * 109.47043 * 179.97438 * 10 9 8 12 12 C 1.76198 * 99.99998 * 179.97438 * 11 10 9 13 13 H 1.07998 * 119.99752 * 0.02562 * 12 11 10 14 14 C 1.38793 * 120.00202 * 179.97438 * 12 11 10 15 15 N 1.31631 * 120.00128 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00314 * 180.02562 * 14 12 11 17 17 H 1.48508 * 109.47003 * 90.00279 * 16 14 12 18 18 H 1.48495 * 109.47382 * 210.00045 * 16 14 12 19 19 H 1.48504 * 109.47106 * 330.00366 * 16 14 12 20 20 C 1.46899 * 110.17620 * 291.00160 * 7 6 5 21 21 C 1.52997 * 109.38198 * 170.45444 * 20 7 6 22 22 C 1.52998 * 109.38323 * 290.24719 * 20 7 6 23 23 C 1.33574 * 118.57688 * 270.09133 * 4 3 2 24 24 O 1.21279 * 118.52229 * 1.67398 * 23 4 3 25 25 H 1.09004 * 109.47069 * 179.97438 * 1 2 3 26 26 H 1.08991 * 109.47459 * 299.99899 * 1 2 3 27 27 H 1.09000 * 109.46904 * 60.00127 * 1 2 3 28 28 H 1.09003 * 109.47613 * 240.00528 * 2 1 3 29 29 H 1.09002 * 109.47364 * 120.00136 * 2 1 3 30 30 H 1.09000 * 109.47025 * 60.00346 * 3 2 1 31 31 H 1.09000 * 109.47158 * 299.99718 * 3 2 1 32 32 H 1.09000 * 109.37287 * 41.66387 * 5 4 3 33 33 H 1.08993 * 109.27606 * 281.95467 * 5 4 3 34 34 H 1.09004 * 109.59651 * 290.51716 * 6 5 4 35 35 H 1.09004 * 109.59349 * 170.06682 * 6 5 4 36 36 H 1.09002 * 109.47156 * 66.18327 * 8 7 6 37 37 H 1.08997 * 109.47021 * 186.18122 * 8 7 6 38 38 H 1.08997 * 109.47019 * 306.27738 * 9 8 7 39 39 H 1.09000 * 109.47296 * 66.28161 * 9 8 7 40 40 H 1.08997 * 109.46942 * 299.99697 * 10 9 8 41 41 H 1.09000 * 109.47030 * 59.99910 * 10 9 8 42 42 H 0.96998 * 120.00703 * 179.97438 * 15 14 12 43 43 H 1.09003 * 109.46648 * 179.79107 * 21 20 7 44 44 H 1.08992 * 109.47742 * 299.78586 * 21 20 7 45 45 H 1.09002 * 109.47462 * 59.79789 * 21 20 7 46 46 H 1.09009 * 109.47030 * 292.41541 * 22 20 7 47 47 H 1.08997 * 109.47573 * 52.41866 * 22 20 7 48 48 H 1.09004 * 109.46869 * 172.42088 * 22 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.2030 1.4424 -1.2818 6 6 5.6531 1.8904 -1.0895 7 7 6.2494 1.1051 0.0034 8 6 7.7076 1.2784 0.0412 9 6 8.2952 0.9576 -1.3346 10 6 9.8230 0.9853 -1.2557 11 16 10.5181 0.6050 -2.8831 12 6 12.2377 0.7036 -2.5120 13 1 12.5609 0.9422 -1.5095 14 6 13.1769 0.4737 -3.5076 15 7 12.7830 0.1824 -4.7294 16 14 15.0000 0.5776 -3.1140 17 1 15.4911 -0.7575 -2.6875 18 1 15.7432 1.0154 -4.3227 19 1 15.2149 1.5572 -2.0188 20 6 5.6412 1.4800 1.2870 21 6 6.0946 0.4985 2.3695 22 6 6.0852 2.8943 1.6655 23 6 4.1434 1.4409 1.1739 24 8 3.4846 1.4083 2.1916 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5137 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 3.7012 2.1259 -1.9668 33 1 4.1879 0.4358 -1.6996 34 1 5.6776 2.9498 -0.8339 35 1 6.2131 1.7210 -2.0092 36 1 7.9443 2.3089 0.3060 37 1 8.1343 0.6051 0.7845 38 1 7.9655 -0.0328 -1.6485 39 1 7.9552 1.6997 -2.0570 40 1 10.1527 1.9756 -0.9418 41 1 10.1630 0.2432 -0.5334 42 1 13.4393 0.0220 -5.4254 43 1 5.6470 0.7775 3.3234 44 1 5.7790 -0.5097 2.1013 45 1 7.1808 0.5285 2.4553 46 1 7.1526 2.8931 1.8865 47 1 5.8869 3.5719 0.8351 48 1 5.5325 3.2255 2.5447 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187887445.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:46 Heat of formation + Delta-G solvation = -41.967591 kcal Electronic energy + Delta-G solvation = -24719.556519 eV Core-core repulsion = 21321.291039 eV Total energy + Delta-G solvation = -3398.265479 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.22985 -38.18091 -36.61432 -33.99271 -33.60773 -32.44735 -31.26829 -28.92788 -27.61970 -26.90203 -25.82150 -25.22745 -23.44511 -22.57386 -21.52073 -20.48447 -18.04578 -17.66932 -17.25652 -16.81427 -15.86670 -15.41498 -15.19929 -15.09876 -14.83047 -14.78793 -14.27808 -14.03982 -13.92653 -13.43719 -13.22703 -12.98769 -12.82957 -12.55928 -12.33267 -12.23718 -12.11079 -12.07814 -11.72257 -11.67702 -11.60136 -11.45287 -11.37312 -11.13302 -11.06989 -10.91807 -10.82573 -10.63183 -10.31460 -9.83150 -9.52244 -9.07591 -8.92141 -8.51645 -8.33202 -6.55081 -6.24751 -3.95071 2.45724 2.73537 3.19680 3.20667 3.27689 3.44307 3.70267 4.18102 4.20682 4.51364 4.63808 4.69501 4.74567 4.77701 4.89538 4.97846 5.05091 5.11420 5.15184 5.19084 5.27382 5.35109 5.38096 5.39050 5.45306 5.49206 5.58574 5.60918 5.63926 5.66196 5.71682 5.74765 5.81035 5.85937 5.91731 5.95517 6.04123 6.14522 6.23557 6.26644 6.51562 6.65685 6.80311 6.86061 7.21972 7.58864 7.99356 8.34822 9.21786 10.83400 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.026770 B = 0.002455 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.704510 B =11404.290886 C =12049.880349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.138 4.138 3 C 0.110 3.890 4 N -0.602 5.602 5 C 0.118 3.882 6 C 0.021 3.979 7 N -0.520 5.520 8 C 0.053 3.947 9 C -0.097 4.097 10 C -0.112 4.112 11 S -0.132 6.132 12 C -0.516 4.516 13 H 0.072 0.928 14 C 0.071 3.929 15 N -0.870 5.870 16 Si 0.918 3.082 17 H -0.277 1.277 18 H -0.282 1.282 19 H -0.272 1.272 20 C 0.094 3.906 21 C -0.127 4.127 22 C -0.176 4.176 23 C 0.534 3.466 24 O -0.548 6.548 25 H 0.056 0.944 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.048 0.952 35 H 0.110 0.890 36 H 0.042 0.958 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.066 0.934 40 H 0.058 0.942 41 H 0.061 0.939 42 H 0.267 0.733 43 H 0.070 0.930 44 H 0.065 0.935 45 H 0.068 0.932 46 H 0.076 0.924 47 H 0.061 0.939 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.859 3.651 9.181 23.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.177 4.177 3 C -0.013 4.013 4 N -0.334 5.334 5 C -0.005 4.005 6 C -0.107 4.107 7 N -0.245 5.245 8 C -0.076 4.076 9 C -0.136 4.136 10 C -0.262 4.262 11 S 0.096 5.904 12 C -0.664 4.664 13 H 0.090 0.910 14 C -0.138 4.138 15 N -0.505 5.505 16 Si 0.745 3.255 17 H -0.203 1.203 18 H -0.208 1.208 19 H -0.197 1.197 20 C 0.001 3.999 21 C -0.185 4.185 22 C -0.234 4.234 23 C 0.322 3.678 24 O -0.425 6.425 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.102 0.898 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.066 0.934 35 H 0.128 0.872 36 H 0.060 0.940 37 H 0.100 0.900 38 H 0.095 0.905 39 H 0.084 0.916 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.089 0.911 44 H 0.084 0.916 45 H 0.087 0.913 46 H 0.095 0.905 47 H 0.080 0.920 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -21.747 2.856 8.445 23.503 hybrid contribution 2.039 1.157 1.303 2.682 sum -19.708 4.013 9.747 22.350 Atomic orbital electron populations 1.21684 0.95177 1.01943 1.01798 1.21841 0.96062 0.97052 1.02711 1.21584 0.79246 0.97402 1.03050 1.47477 1.06863 1.72717 1.06337 1.21596 0.91881 1.02494 0.84557 1.22714 0.94429 0.96183 0.97350 1.62817 1.05501 1.54463 1.01729 1.22352 0.85443 1.00317 0.99473 1.21380 0.94085 1.02977 0.95144 1.23219 0.96617 1.02806 1.03510 1.84601 1.05438 1.91988 1.08383 1.22680 0.89992 1.55100 0.98623 0.90969 1.25013 0.99653 0.94617 0.94534 1.70017 1.34585 1.44724 1.01207 0.86170 0.82800 0.78574 0.78005 1.20256 1.20772 1.19709 1.21154 0.90357 0.96260 0.92102 1.21717 1.01593 0.98520 0.96638 1.22397 1.03011 0.95467 1.02572 1.19913 0.89745 0.75218 0.82954 1.90676 1.66610 1.50432 1.34802 0.92469 0.92568 0.92689 0.91784 0.91488 0.89844 0.90649 0.90301 0.90631 0.93394 0.87242 0.94008 0.90009 0.90513 0.91583 0.92305 0.92016 0.92308 0.91078 0.91594 0.91333 0.90515 0.92017 0.91134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.91 37.15 0.37 -0.64 16 2 C -0.14 -1.18 6.25 -26.73 -0.17 -1.35 16 3 C 0.11 0.97 5.27 -4.04 -0.02 0.95 16 4 N -0.60 -6.27 2.82 -174.62 -0.49 -6.77 16 5 C 0.12 1.02 6.62 -4.31 -0.03 0.99 16 6 C 0.02 0.21 5.23 -3.67 -0.02 0.19 16 7 N -0.52 -5.92 4.52 -220.33 -1.00 -6.92 16 8 C 0.05 0.64 4.31 -3.82 -0.02 0.63 16 9 C -0.10 -1.45 4.60 -26.73 -0.12 -1.57 16 10 C -0.11 -2.15 5.67 37.16 0.21 -1.94 16 11 S -0.13 -3.36 21.44 -107.50 -2.30 -5.67 16 12 C -0.52 -14.55 9.50 30.94 0.29 -14.26 16 13 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 14 C 0.07 1.99 5.49 -17.43 -0.10 1.89 16 15 N -0.87 -25.67 13.22 55.49 0.73 -24.93 16 16 Si 0.92 21.31 29.55 -169.99 -5.02 16.29 16 17 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 18 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 19 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 20 C 0.09 1.07 0.64 -132.97 -0.08 0.99 16 21 C -0.13 -1.42 8.11 37.16 0.30 -1.11 16 22 C -0.18 -1.81 7.55 37.16 0.28 -1.53 16 23 C 0.53 6.74 6.35 -11.74 -0.07 6.67 16 24 O -0.55 -8.34 15.56 5.56 0.09 -8.26 16 25 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 28 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.08 0.85 7.26 -51.93 -0.38 0.47 16 31 H 0.08 0.50 7.92 -51.93 -0.41 0.09 16 32 H 0.08 0.51 7.98 -51.93 -0.41 0.10 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.05 0.46 6.12 -51.93 -0.32 0.14 16 35 H 0.11 1.08 5.70 -51.93 -0.30 0.78 16 36 H 0.04 0.49 6.18 -51.93 -0.32 0.17 16 37 H 0.08 1.01 6.62 -51.93 -0.34 0.66 16 38 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.07 0.95 6.45 -51.93 -0.33 0.62 16 40 H 0.06 1.12 8.14 -51.92 -0.42 0.69 16 41 H 0.06 1.18 8.14 -51.92 -0.42 0.76 16 42 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 43 H 0.07 0.80 7.82 -51.93 -0.41 0.39 16 44 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 45 H 0.07 0.70 6.61 -51.93 -0.34 0.35 16 46 H 0.08 0.74 6.71 -51.92 -0.35 0.40 16 47 H 0.06 0.62 6.21 -51.93 -0.32 0.29 16 48 H 0.07 0.74 8.12 -51.93 -0.42 0.32 16 LS Contribution 381.15 15.07 5.74 5.74 Total: -1.00 -32.05 381.15 -9.86 -41.90 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -8.43 Total: -1.31 kcal Atomic # 6 Polarization: -10.91 SS G_CDS: 0.82 Total: -10.08 kcal Atomic # 7 Polarization: -37.87 SS G_CDS: -0.76 Total: -38.62 kcal Atomic # 8 Polarization: -8.34 SS G_CDS: 0.09 Total: -8.26 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: -3.36 SS G_CDS: -2.30 Total: -5.67 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.05 -9.86 -41.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187887445.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.063 kcal (2) G-P(sol) polarization free energy of solvation -32.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds