Wall clock time and date at job start Tue Mar 31 2020 10:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47061 * 2 1 4 4 N 1.46502 * 109.47195 * 179.97438 * 3 2 1 5 5 C 1.46014 * 118.53669 * 90.00042 * 4 3 2 6 6 C 1.52982 * 110.04047 * 161.83935 * 5 4 3 7 7 N 1.47193 * 108.72982 * 50.29089 * 6 5 4 8 8 C 1.46899 * 110.99664 * 167.63160 * 7 6 5 9 9 C 1.53000 * 109.47284 * 306.18243 * 8 7 6 10 10 C 1.53008 * 109.47013 * 186.28088 * 9 8 7 11 11 S 1.81001 * 109.47043 * 179.97438 * 10 9 8 12 12 C 1.76198 * 99.99998 * 179.97438 * 11 10 9 13 13 H 1.07998 * 119.99752 * 0.02562 * 12 11 10 14 14 C 1.38793 * 120.00202 * 179.97438 * 12 11 10 15 15 N 1.31631 * 120.00128 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00314 * 180.02562 * 14 12 11 17 17 H 1.48508 * 109.47003 * 90.00279 * 16 14 12 18 18 H 1.48495 * 109.47382 * 210.00045 * 16 14 12 19 19 H 1.48504 * 109.47106 * 330.00366 * 16 14 12 20 20 C 1.46899 * 110.17620 * 291.00160 * 7 6 5 21 21 C 1.52997 * 109.38198 * 170.45444 * 20 7 6 22 22 C 1.52998 * 109.38323 * 290.24719 * 20 7 6 23 23 C 1.33574 * 118.57688 * 270.09133 * 4 3 2 24 24 O 1.21279 * 118.52229 * 1.67398 * 23 4 3 25 25 H 1.09004 * 109.47069 * 179.97438 * 1 2 3 26 26 H 1.08991 * 109.47459 * 299.99899 * 1 2 3 27 27 H 1.09000 * 109.46904 * 60.00127 * 1 2 3 28 28 H 1.09003 * 109.47613 * 240.00528 * 2 1 3 29 29 H 1.09002 * 109.47364 * 120.00136 * 2 1 3 30 30 H 1.09000 * 109.47025 * 60.00346 * 3 2 1 31 31 H 1.09000 * 109.47158 * 299.99718 * 3 2 1 32 32 H 1.09000 * 109.37287 * 41.66387 * 5 4 3 33 33 H 1.08993 * 109.27606 * 281.95467 * 5 4 3 34 34 H 1.09004 * 109.59651 * 290.51716 * 6 5 4 35 35 H 1.09004 * 109.59349 * 170.06682 * 6 5 4 36 36 H 1.09002 * 109.47156 * 66.18327 * 8 7 6 37 37 H 1.08997 * 109.47021 * 186.18122 * 8 7 6 38 38 H 1.08997 * 109.47019 * 306.27738 * 9 8 7 39 39 H 1.09000 * 109.47296 * 66.28161 * 9 8 7 40 40 H 1.08997 * 109.46942 * 299.99697 * 10 9 8 41 41 H 1.09000 * 109.47030 * 59.99910 * 10 9 8 42 42 H 0.96998 * 120.00703 * 179.97438 * 15 14 12 43 43 H 1.09003 * 109.46648 * 179.79107 * 21 20 7 44 44 H 1.08992 * 109.47742 * 299.78586 * 21 20 7 45 45 H 1.09002 * 109.47462 * 59.79789 * 21 20 7 46 46 H 1.09009 * 109.47030 * 292.41541 * 22 20 7 47 47 H 1.08997 * 109.47573 * 52.41866 * 22 20 7 48 48 H 1.09004 * 109.46869 * 172.42088 * 22 20 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.2030 1.4424 -1.2818 6 6 5.6531 1.8904 -1.0895 7 7 6.2494 1.1051 0.0034 8 6 7.7076 1.2784 0.0412 9 6 8.2952 0.9576 -1.3346 10 6 9.8230 0.9853 -1.2557 11 16 10.5181 0.6050 -2.8831 12 6 12.2377 0.7036 -2.5120 13 1 12.5609 0.9422 -1.5095 14 6 13.1769 0.4737 -3.5076 15 7 12.7830 0.1824 -4.7294 16 14 15.0000 0.5776 -3.1140 17 1 15.4911 -0.7575 -2.6875 18 1 15.7432 1.0154 -4.3227 19 1 15.2149 1.5572 -2.0188 20 6 5.6412 1.4800 1.2870 21 6 6.0946 0.4985 2.3695 22 6 6.0852 2.8943 1.6655 23 6 4.1434 1.4409 1.1739 24 8 3.4846 1.4083 2.1916 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5137 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6766 1.9563 0.8900 31 1 1.6766 1.9564 -0.8900 32 1 3.7012 2.1259 -1.9668 33 1 4.1879 0.4358 -1.6996 34 1 5.6776 2.9498 -0.8339 35 1 6.2131 1.7210 -2.0092 36 1 7.9443 2.3089 0.3060 37 1 8.1343 0.6051 0.7845 38 1 7.9655 -0.0328 -1.6485 39 1 7.9552 1.6997 -2.0570 40 1 10.1527 1.9756 -0.9418 41 1 10.1630 0.2432 -0.5334 42 1 13.4393 0.0220 -5.4254 43 1 5.6470 0.7775 3.3234 44 1 5.7790 -0.5097 2.1013 45 1 7.1808 0.5285 2.4553 46 1 7.1526 2.8931 1.8865 47 1 5.8869 3.5719 0.8351 48 1 5.5325 3.2255 2.5447 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187887445.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:45 Heat of formation + Delta-G solvation = -61.442611 kcal Electronic energy + Delta-G solvation = -24720.401019 eV Core-core repulsion = 21321.291039 eV Total energy + Delta-G solvation = -3399.109980 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.12127 -39.13029 -37.45691 -35.10877 -34.57250 -34.38055 -32.22969 -29.84023 -28.47004 -27.87015 -27.63549 -26.37667 -24.45725 -23.40425 -22.37880 -21.52583 -19.56922 -18.89380 -18.31618 -17.66906 -16.87548 -16.73517 -16.41701 -16.34244 -16.13521 -15.68623 -15.37413 -15.19700 -14.83083 -14.72884 -14.33719 -13.99264 -13.77783 -13.60982 -13.38889 -13.20556 -13.07183 -12.99460 -12.93774 -12.82975 -12.70734 -12.66123 -12.42540 -12.40376 -12.32749 -12.15878 -12.04032 -11.62446 -11.48742 -11.34913 -11.12034 -10.72043 -10.27551 -9.74654 -9.39968 -8.62446 -8.35591 -6.10414 1.33003 1.40116 1.49329 1.51408 1.77364 1.93925 2.30097 2.69114 2.98779 3.33495 3.35554 3.73756 3.80894 3.87854 3.99362 4.03277 4.06940 4.19835 4.22854 4.27350 4.36740 4.46419 4.49259 4.54055 4.56793 4.59572 4.70229 4.72250 4.75794 4.83153 4.84774 4.86709 4.93830 4.94546 5.09231 5.15243 5.17671 5.18944 5.25223 5.31980 5.33365 5.42218 5.50347 5.87963 5.93255 6.20169 6.36394 7.07260 7.08019 8.73520 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.026770 B = 0.002455 C = 0.002323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.704510 B =11404.290886 C =12049.880349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.133 4.133 3 C 0.108 3.892 4 N -0.600 5.600 5 C 0.117 3.883 6 C 0.018 3.982 7 N -0.526 5.526 8 C 0.064 3.936 9 C -0.084 4.084 10 C -0.088 4.088 11 S -0.194 6.194 12 C -0.537 4.537 13 H 0.072 0.928 14 C 0.015 3.985 15 N -0.907 5.907 16 Si 0.991 3.009 17 H -0.269 1.269 18 H -0.275 1.275 19 H -0.263 1.263 20 C 0.095 3.905 21 C -0.124 4.124 22 C -0.171 4.171 23 C 0.527 3.473 24 O -0.583 6.583 25 H 0.059 0.941 26 H 0.052 0.948 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.037 0.963 30 H 0.067 0.933 31 H 0.105 0.895 32 H 0.109 0.891 33 H 0.077 0.923 34 H 0.055 0.945 35 H 0.111 0.889 36 H 0.052 0.948 37 H 0.082 0.918 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.271 0.729 43 H 0.066 0.934 44 H 0.054 0.946 45 H 0.078 0.922 46 H 0.084 0.916 47 H 0.066 0.934 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.978 4.482 9.211 23.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.172 4.172 3 C -0.014 4.014 4 N -0.330 5.330 5 C -0.006 4.006 6 C -0.109 4.109 7 N -0.251 5.251 8 C -0.065 4.065 9 C -0.122 4.122 10 C -0.238 4.238 11 S 0.035 5.965 12 C -0.685 4.685 13 H 0.090 0.910 14 C -0.190 4.190 15 N -0.543 5.543 16 Si 0.813 3.187 17 H -0.194 1.194 18 H -0.200 1.200 19 H -0.187 1.187 20 C 0.002 3.998 21 C -0.182 4.182 22 C -0.230 4.230 23 C 0.315 3.685 24 O -0.463 6.463 25 H 0.078 0.922 26 H 0.071 0.929 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.056 0.944 30 H 0.086 0.914 31 H 0.123 0.877 32 H 0.127 0.873 33 H 0.095 0.905 34 H 0.073 0.927 35 H 0.129 0.871 36 H 0.070 0.930 37 H 0.101 0.899 38 H 0.087 0.913 39 H 0.091 0.909 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.085 0.915 44 H 0.073 0.927 45 H 0.097 0.903 46 H 0.103 0.897 47 H 0.085 0.915 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -21.883 3.686 8.450 23.746 hybrid contribution 1.973 0.892 1.302 2.526 sum -19.910 4.578 9.752 22.638 Atomic orbital electron populations 1.21657 0.93690 1.02389 1.02450 1.21779 0.97339 0.96599 1.01435 1.21713 0.78399 0.97647 1.03689 1.47605 1.07643 1.71421 1.06377 1.21755 0.91345 1.03412 0.84059 1.22795 0.95058 0.96397 0.96690 1.62777 1.04883 1.55225 1.02233 1.22160 0.86030 1.00879 0.97452 1.21245 0.90989 1.02893 0.97103 1.23151 0.98942 1.02695 0.98966 1.84575 1.05348 1.92472 1.14111 1.23041 0.91395 1.55227 0.98818 0.90985 1.26030 1.04749 0.93947 0.94266 1.70144 1.36323 1.45583 1.02271 0.85056 0.76513 0.78951 0.78147 1.19436 1.20012 1.18745 1.21139 0.89753 0.96921 0.92011 1.21689 1.02168 0.97901 0.96479 1.22356 1.03346 0.94694 1.02567 1.20155 0.90192 0.75029 0.83172 1.90657 1.67298 1.52292 1.36054 0.92169 0.92924 0.90994 0.91316 0.94409 0.91441 0.87667 0.87317 0.90517 0.92737 0.87146 0.92992 0.89947 0.91289 0.90881 0.91889 0.92068 0.92029 0.91520 0.92678 0.90271 0.89726 0.91509 0.91579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.91 71.98 0.71 -1.05 16 2 C -0.13 -2.17 6.25 30.59 0.19 -1.98 16 3 C 0.11 1.76 5.27 86.38 0.45 2.22 16 4 N -0.60 -11.66 2.82 -825.44 -2.33 -13.99 16 5 C 0.12 1.74 6.62 86.46 0.57 2.31 16 6 C 0.02 0.32 5.23 86.24 0.45 0.77 16 7 N -0.53 -11.10 4.52 -850.99 -3.85 -14.95 16 8 C 0.06 1.43 4.31 86.30 0.37 1.80 16 9 C -0.08 -2.36 4.60 30.60 0.14 -2.22 16 10 C -0.09 -3.29 5.67 71.98 0.41 -2.88 16 11 S -0.19 -9.92 21.44 -56.49 -1.21 -11.13 16 12 C -0.54 -30.38 9.50 67.95 0.65 -29.73 16 13 H 0.07 3.93 7.80 -2.91 -0.02 3.90 16 14 C 0.02 0.84 5.49 84.86 0.47 1.31 16 15 N -0.91 -53.93 13.22 21.65 0.29 -53.65 16 16 Si 0.99 43.34 29.55 68.60 2.03 45.37 16 17 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 18 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 19 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 20 C 0.09 2.05 0.64 2.64 0.00 2.05 16 21 C -0.12 -2.71 8.11 71.98 0.58 -2.13 16 22 C -0.17 -3.25 7.55 71.98 0.54 -2.70 16 23 C 0.53 12.98 6.35 87.70 0.56 13.54 16 24 O -0.58 -17.97 15.56 -3.03 -0.05 -18.02 16 25 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 26 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.07 1.35 7.26 -2.39 -0.02 1.33 16 31 H 0.11 1.09 7.92 -2.39 -0.02 1.07 16 32 H 0.11 1.02 7.98 -2.39 -0.02 1.00 16 33 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.05 0.90 6.12 -2.38 -0.01 0.89 16 35 H 0.11 1.93 5.70 -2.38 -0.01 1.91 16 36 H 0.05 1.09 6.18 -2.39 -0.01 1.07 16 37 H 0.08 1.87 6.62 -2.39 -0.02 1.85 16 38 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 39 H 0.07 1.98 6.45 -2.39 -0.02 1.96 16 40 H 0.06 2.30 8.14 -2.40 -0.02 2.28 16 41 H 0.06 2.29 8.14 -2.40 -0.02 2.27 16 42 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 43 H 0.07 1.50 7.82 -2.39 -0.02 1.48 16 44 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.08 1.52 6.61 -2.39 -0.02 1.50 16 46 H 0.08 1.46 6.71 -2.38 -0.02 1.45 16 47 H 0.07 1.19 6.21 -2.39 -0.01 1.18 16 48 H 0.07 1.32 8.12 -2.38 -0.02 1.30 16 Total: -1.00 -69.87 381.15 1.90 -67.97 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: 0.92 Total: 17.09 kcal Atomic # 6 Polarization: -24.80 SS G_CDS: 6.10 Total: -18.70 kcal Atomic # 7 Polarization: -76.69 SS G_CDS: -5.89 Total: -82.58 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: -0.05 Total: -18.02 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Atomic # 16 Polarization: -9.92 SS G_CDS: -1.21 Total: -11.13 kcal Total: -69.87 1.90 -67.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187887445.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.530 kcal (2) G-P(sol) polarization free energy of solvation -69.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds