Wall clock time and date at job start Tue Mar 31 2020 12:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 110.50544 * 2 1 4 4 C 1.54977 * 110.57035 * 122.91392 * 2 1 3 5 5 C 1.54886 * 102.33580 * 155.65219 * 4 2 1 6 6 C 1.51845 * 104.43315 * 322.37831 * 5 4 2 7 7 C 1.32994 * 126.34344 * 203.77177 * 6 5 4 8 8 C 1.47101 * 119.99572 * 0.02562 * 7 6 5 9 9 O 1.21610 * 120.00408 * 0.02562 * 8 7 6 10 10 N 1.34779 * 119.99811 * 180.02562 * 8 7 6 11 11 C 1.46495 * 120.00216 * 0.02562 * 10 8 7 12 12 C 1.50700 * 109.47608 * 89.99533 * 11 10 8 13 13 H 1.08006 * 119.99430 * 0.02562 * 12 11 10 14 14 C 1.37869 * 120.00706 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99681 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 120.00206 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.46919 * 60.00022 * 16 14 12 18 18 H 1.48501 * 109.46703 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.46900 * 299.99891 * 16 14 12 20 20 C 1.46499 * 119.99949 * 180.02562 * 10 8 7 21 21 C 1.50698 * 109.47183 * 90.00117 * 20 10 8 22 22 C 1.38232 * 119.61523 * 94.72728 * 21 20 10 23 23 C 1.38628 * 119.15654 * 179.75261 * 22 21 20 24 24 C 1.38677 * 118.42296 * 0.51393 * 23 22 21 25 25 C 1.38174 * 119.15892 * 359.72390 * 24 23 22 26 26 N 1.31854 * 119.62107 * 274.99673 * 21 20 10 27 27 C 1.51450 * 107.31604 * 23.78515 * 6 5 4 28 28 H 1.09001 * 109.47002 * 181.29836 * 1 2 3 29 29 H 1.08993 * 109.46955 * 301.30273 * 1 2 3 30 30 H 1.09000 * 109.47050 * 61.30102 * 1 2 3 31 31 H 1.09003 * 110.83490 * 273.86746 * 4 2 1 32 32 H 1.09004 * 110.83350 * 37.43951 * 4 2 1 33 33 H 1.08998 * 110.44443 * 203.63484 * 5 4 2 34 34 H 1.09003 * 110.44150 * 81.10885 * 5 4 2 35 35 H 1.07996 * 120.00426 * 180.02562 * 7 6 5 36 36 H 1.08998 * 109.47597 * 209.99894 * 11 10 8 37 37 H 1.09002 * 109.47172 * 329.99955 * 11 10 8 38 38 H 0.97000 * 119.99691 * 180.02562 * 15 14 12 39 39 H 1.09008 * 109.46856 * 210.00092 * 20 10 8 40 40 H 1.08999 * 109.47564 * 329.99740 * 20 10 8 41 41 H 1.07996 * 120.42170 * 359.97438 * 22 21 20 42 42 H 1.08005 * 120.79206 * 180.25990 * 23 22 21 43 43 H 1.07997 * 120.41921 * 179.70896 * 24 23 22 44 44 H 1.08007 * 119.61551 * 180.02562 * 25 24 23 45 45 H 1.08994 * 109.98513 * 240.29776 * 27 6 5 46 46 H 1.09003 * 109.98249 * 118.99735 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9119 1.0210 0.0000 4 6 2.0746 -0.7884 1.2181 5 6 3.4815 -1.2173 0.7326 6 6 3.2912 -1.5432 -0.7382 7 6 4.0540 -2.3484 -1.4721 8 6 5.2113 -3.0219 -0.8631 9 8 5.4703 -2.8429 0.3116 10 7 5.9847 -3.8374 -1.6069 11 6 5.6732 -4.0527 -3.0221 12 6 6.3922 -3.0245 -3.8569 13 1 7.0189 -2.2849 -3.3808 14 6 6.2500 -3.0279 -5.2282 15 7 5.4864 -3.9282 -5.8079 16 14 7.1419 -1.7537 -6.2629 17 1 8.6063 -1.8833 -6.0538 18 1 6.8260 -1.9719 -7.6975 19 1 6.7027 -0.3935 -5.8601 20 6 7.1369 -4.5087 -1.0002 21 6 6.7060 -5.8408 -0.4428 22 6 6.8531 -6.9818 -1.2092 23 6 6.4584 -8.2030 -0.6850 24 6 5.9181 -8.2296 0.5919 25 6 5.7974 -7.0472 1.2966 26 7 6.1882 -5.9039 0.7681 27 6 2.0721 -0.7814 -1.2148 28 1 -0.3633 -1.0274 0.0233 29 1 -0.3633 0.5339 0.8780 30 1 -0.3633 0.4935 -0.9014 31 1 2.1465 -0.1455 2.0954 32 1 1.4535 -1.6600 1.4248 33 1 3.8199 -2.0987 1.2772 34 1 4.1914 -0.3988 0.8523 35 1 3.8239 -2.5077 -2.5152 36 1 5.9962 -5.0509 -3.3176 37 1 4.5982 -3.9583 -3.1760 38 1 5.3866 -3.9308 -6.7727 39 1 7.9070 -4.6630 -1.7562 40 1 7.5359 -3.8903 -0.1962 41 1 7.2735 -6.9232 -2.2022 42 1 6.5652 -9.1116 -1.2591 43 1 5.5956 -9.1626 1.0299 44 1 5.3780 -7.0595 2.2919 45 1 1.3160 -1.4777 -1.5773 46 1 2.3524 -0.0888 -2.0084 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267859681.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:18 Heat of formation + Delta-G solvation = 1.407647 kcal Electronic energy + Delta-G solvation = -26087.418648 eV Core-core repulsion = 22555.590108 eV Total energy + Delta-G solvation = -3531.828539 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.00437 -39.05687 -37.80572 -35.03068 -32.93763 -32.23644 -32.13548 -31.30744 -29.49219 -27.73881 -27.10714 -25.81602 -23.60175 -23.29908 -22.72426 -21.83153 -20.15332 -19.21873 -17.39176 -16.80224 -16.53116 -16.12441 -15.84800 -15.64006 -15.22796 -15.05532 -14.36496 -14.18158 -13.91879 -13.43430 -13.35202 -13.08863 -12.94423 -12.80039 -12.53289 -12.46605 -12.22600 -11.83351 -11.62372 -11.44053 -11.38766 -11.19204 -10.95922 -10.81457 -10.73285 -10.61200 -10.54679 -10.30581 -10.10606 -9.78237 -9.61760 -9.09148 -8.92500 -8.66438 -8.54144 -8.43483 -7.64236 -6.16875 -4.24025 1.33178 1.55220 2.08068 3.25209 3.29938 3.33237 3.83543 4.12359 4.31854 4.37030 4.65930 4.73443 4.87963 4.99017 5.01219 5.06962 5.16188 5.28339 5.38618 5.41945 5.47339 5.54904 5.66776 5.70175 5.82143 5.83798 5.85816 5.92964 6.00345 6.03061 6.10548 6.18677 6.23692 6.28706 6.35329 6.38891 6.44692 6.52588 6.59533 6.80653 6.95610 7.02546 7.09166 7.25606 7.60171 7.78742 8.08065 8.33894 8.43959 8.83147 9.17557 9.44160 10.89561 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.007118 B = 0.005781 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3932.685525 B = 4842.563061 C = 8026.320261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.098 4.098 3 H 0.074 0.926 4 C -0.122 4.122 5 C -0.095 4.095 6 C -0.062 4.062 7 C -0.187 4.187 8 C 0.550 3.450 9 O -0.554 6.554 10 N -0.589 5.589 11 C 0.239 3.761 12 C -0.535 4.535 13 H 0.061 0.939 14 C 0.065 3.935 15 N -0.893 5.893 16 Si 0.896 3.104 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.275 1.275 20 C 0.169 3.831 21 C 0.122 3.878 22 C -0.156 4.156 23 C -0.081 4.081 24 C -0.183 4.183 25 C 0.091 3.909 26 N -0.458 5.458 27 C -0.094 4.094 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.097 0.903 34 H 0.076 0.924 35 H 0.138 0.862 36 H 0.033 0.967 37 H 0.039 0.961 38 H 0.265 0.735 39 H 0.093 0.907 40 H 0.090 0.910 41 H 0.137 0.863 42 H 0.130 0.870 43 H 0.128 0.872 44 H 0.149 0.851 45 H 0.077 0.923 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.709 -1.998 9.949 11.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.116 4.116 3 H 0.093 0.907 4 C -0.159 4.159 5 C -0.132 4.132 6 C -0.064 4.064 7 C -0.207 4.207 8 C 0.341 3.659 9 O -0.435 6.435 10 N -0.320 5.320 11 C 0.119 3.881 12 C -0.573 4.573 13 H 0.079 0.921 14 C -0.138 4.138 15 N -0.531 5.531 16 Si 0.723 3.277 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.201 1.201 20 C 0.044 3.956 21 C -0.017 4.017 22 C -0.177 4.177 23 C -0.107 4.107 24 C -0.203 4.203 25 C -0.066 4.066 26 N -0.167 5.167 27 C -0.131 4.131 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.115 0.885 34 H 0.094 0.906 35 H 0.156 0.844 36 H 0.051 0.949 37 H 0.057 0.943 38 H 0.075 0.925 39 H 0.112 0.888 40 H 0.108 0.892 41 H 0.155 0.845 42 H 0.148 0.852 43 H 0.146 0.854 44 H 0.166 0.834 45 H 0.095 0.905 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.722 -1.196 10.817 11.863 hybrid contribution 0.484 -0.330 -1.555 1.662 sum -4.238 -1.526 9.262 10.299 Atomic orbital electron populations 1.21802 0.95111 1.01768 1.01348 1.21979 0.95244 0.99204 0.95204 0.90729 1.22651 0.96896 0.99378 0.96993 1.21616 0.95783 1.02728 0.93078 1.22679 0.94236 0.93704 0.95806 1.22257 0.96708 1.00728 1.01047 1.18380 0.83104 0.78877 0.85511 1.90659 1.72150 1.64507 1.16165 1.48012 1.27313 1.44165 1.12475 1.19442 0.97261 0.97306 0.74057 1.21488 1.29468 1.14976 0.91401 0.92059 1.24927 0.95211 0.95865 0.97756 1.69920 1.38054 1.34469 1.10694 0.86586 0.80205 0.81886 0.78986 1.20126 1.21215 1.20095 1.20095 0.89070 0.88341 0.98089 1.21938 0.93870 0.96193 0.89748 1.22126 1.01292 0.93028 1.01233 1.21540 0.95905 0.98102 0.95168 1.22078 1.02290 0.99813 0.96143 1.22752 0.96329 0.87883 0.99654 1.67648 1.08436 1.28215 1.12407 1.21331 0.95455 0.98354 0.97914 0.92611 0.92843 0.92774 0.91734 0.91580 0.88483 0.90604 0.84395 0.94859 0.94324 0.92528 0.88849 0.89178 0.84486 0.85179 0.85398 0.83362 0.90467 0.90465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.12 37.16 0.34 -1.09 16 2 C -0.10 -1.17 3.49 -88.90 -0.31 -1.48 16 3 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 4 C -0.12 -1.55 6.38 -24.69 -0.16 -1.71 16 5 C -0.10 -1.54 5.41 -26.32 -0.14 -1.69 16 6 C -0.06 -1.08 6.15 -100.23 -0.62 -1.70 16 7 C -0.19 -3.79 9.13 -37.81 -0.34 -4.13 16 8 C 0.55 12.12 7.62 -12.66 -0.10 12.03 16 9 O -0.55 -12.69 13.33 5.27 0.07 -12.62 16 10 N -0.59 -12.81 2.44 -177.83 -0.43 -13.24 16 11 C 0.24 5.69 4.88 -5.20 -0.03 5.67 16 12 C -0.53 -13.80 9.39 -34.44 -0.32 -14.13 16 13 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 14 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 15 N -0.89 -24.34 13.29 55.43 0.74 -23.60 16 16 Si 0.90 20.47 29.54 -169.99 -5.02 15.45 16 17 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 18 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 20 C 0.17 3.26 5.71 -5.19 -0.03 3.23 16 21 C 0.12 2.20 6.36 -82.59 -0.53 1.68 16 22 C -0.16 -2.47 9.72 -39.44 -0.38 -2.85 16 23 C -0.08 -1.08 10.18 -39.28 -0.40 -1.48 16 24 C -0.18 -2.32 10.11 -39.44 -0.40 -2.72 16 25 C 0.09 1.35 11.18 -17.55 -0.20 1.16 16 26 N -0.46 -8.43 10.27 -9.47 -0.10 -8.53 16 27 C -0.09 -1.32 6.19 -26.85 -0.17 -1.48 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.07 0.83 8.05 -51.93 -0.42 0.41 16 33 H 0.10 1.80 6.26 -51.93 -0.33 1.48 16 34 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.14 2.93 6.22 -52.49 -0.33 2.60 16 36 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 37 H 0.04 0.97 6.09 -51.93 -0.32 0.65 16 38 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 39 H 0.09 1.68 7.97 -51.92 -0.41 1.27 16 40 H 0.09 1.79 7.42 -51.93 -0.39 1.41 16 41 H 0.14 2.05 8.06 -52.49 -0.42 1.63 16 42 H 0.13 1.35 8.06 -52.48 -0.42 0.93 16 43 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 44 H 0.15 1.78 8.06 -52.48 -0.42 1.35 16 45 H 0.08 1.04 7.83 -51.93 -0.41 0.64 16 46 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 379.94 15.07 5.73 5.73 Total: -1.00 -29.86 379.94 -10.10 -39.96 By element: Atomic # 1 Polarization: 13.14 SS G_CDS: -7.21 Total: 5.94 kcal Atomic # 6 Polarization: -5.20 SS G_CDS: -3.87 Total: -9.08 kcal Atomic # 7 Polarization: -45.58 SS G_CDS: 0.21 Total: -45.37 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: 0.07 Total: -12.62 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -29.86 -10.10 -39.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267859681.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.368 kcal (2) G-P(sol) polarization free energy of solvation -29.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds