Wall clock time and date at job start Tue Mar 31 2020 12:00:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 110.50544 * 2 1 4 4 C 1.54977 * 110.57035 * 122.91392 * 2 1 3 5 5 C 1.54886 * 102.33580 * 155.65219 * 4 2 1 6 6 C 1.51845 * 104.43315 * 322.37831 * 5 4 2 7 7 C 1.32994 * 126.34344 * 203.77177 * 6 5 4 8 8 C 1.47101 * 119.99572 * 0.02562 * 7 6 5 9 9 O 1.21610 * 120.00408 * 0.02562 * 8 7 6 10 10 N 1.34779 * 119.99811 * 180.02562 * 8 7 6 11 11 C 1.46495 * 120.00216 * 0.02562 * 10 8 7 12 12 C 1.50700 * 109.47608 * 89.99533 * 11 10 8 13 13 H 1.08006 * 119.99430 * 0.02562 * 12 11 10 14 14 C 1.37869 * 120.00706 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99681 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 120.00206 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.46919 * 60.00022 * 16 14 12 18 18 H 1.48501 * 109.46703 * 179.97438 * 16 14 12 19 19 H 1.48497 * 109.46900 * 299.99891 * 16 14 12 20 20 C 1.46499 * 119.99949 * 180.02562 * 10 8 7 21 21 C 1.50698 * 109.47183 * 90.00117 * 20 10 8 22 22 C 1.38232 * 119.61523 * 94.72728 * 21 20 10 23 23 C 1.38628 * 119.15654 * 179.75261 * 22 21 20 24 24 C 1.38677 * 118.42296 * 0.51393 * 23 22 21 25 25 C 1.38174 * 119.15892 * 359.72390 * 24 23 22 26 26 N 1.31854 * 119.62107 * 274.99673 * 21 20 10 27 27 C 1.51450 * 107.31604 * 23.78515 * 6 5 4 28 28 H 1.09001 * 109.47002 * 181.29836 * 1 2 3 29 29 H 1.08993 * 109.46955 * 301.30273 * 1 2 3 30 30 H 1.09000 * 109.47050 * 61.30102 * 1 2 3 31 31 H 1.09003 * 110.83490 * 273.86746 * 4 2 1 32 32 H 1.09004 * 110.83350 * 37.43951 * 4 2 1 33 33 H 1.08998 * 110.44443 * 203.63484 * 5 4 2 34 34 H 1.09003 * 110.44150 * 81.10885 * 5 4 2 35 35 H 1.07996 * 120.00426 * 180.02562 * 7 6 5 36 36 H 1.08998 * 109.47597 * 209.99894 * 11 10 8 37 37 H 1.09002 * 109.47172 * 329.99955 * 11 10 8 38 38 H 0.97000 * 119.99691 * 180.02562 * 15 14 12 39 39 H 1.09008 * 109.46856 * 210.00092 * 20 10 8 40 40 H 1.08999 * 109.47564 * 329.99740 * 20 10 8 41 41 H 1.07996 * 120.42170 * 359.97438 * 22 21 20 42 42 H 1.08005 * 120.79206 * 180.25990 * 23 22 21 43 43 H 1.07997 * 120.41921 * 179.70896 * 24 23 22 44 44 H 1.08007 * 119.61551 * 180.02562 * 25 24 23 45 45 H 1.08994 * 109.98513 * 240.29776 * 27 6 5 46 46 H 1.09003 * 109.98249 * 118.99735 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9119 1.0210 0.0000 4 6 2.0746 -0.7884 1.2181 5 6 3.4815 -1.2173 0.7326 6 6 3.2912 -1.5432 -0.7382 7 6 4.0540 -2.3484 -1.4721 8 6 5.2113 -3.0219 -0.8631 9 8 5.4703 -2.8429 0.3116 10 7 5.9847 -3.8374 -1.6069 11 6 5.6732 -4.0527 -3.0221 12 6 6.3922 -3.0245 -3.8569 13 1 7.0189 -2.2849 -3.3808 14 6 6.2500 -3.0279 -5.2282 15 7 5.4864 -3.9282 -5.8079 16 14 7.1419 -1.7537 -6.2629 17 1 8.6063 -1.8833 -6.0538 18 1 6.8260 -1.9719 -7.6975 19 1 6.7027 -0.3935 -5.8601 20 6 7.1369 -4.5087 -1.0002 21 6 6.7060 -5.8408 -0.4428 22 6 6.8531 -6.9818 -1.2092 23 6 6.4584 -8.2030 -0.6850 24 6 5.9181 -8.2296 0.5919 25 6 5.7974 -7.0472 1.2966 26 7 6.1882 -5.9039 0.7681 27 6 2.0721 -0.7814 -1.2148 28 1 -0.3633 -1.0274 0.0233 29 1 -0.3633 0.5339 0.8780 30 1 -0.3633 0.4935 -0.9014 31 1 2.1465 -0.1455 2.0954 32 1 1.4535 -1.6600 1.4248 33 1 3.8199 -2.0987 1.2772 34 1 4.1914 -0.3988 0.8523 35 1 3.8239 -2.5077 -2.5152 36 1 5.9962 -5.0509 -3.3176 37 1 4.5982 -3.9583 -3.1760 38 1 5.3866 -3.9308 -6.7727 39 1 7.9070 -4.6630 -1.7562 40 1 7.5359 -3.8903 -0.1962 41 1 7.2735 -6.9232 -2.2022 42 1 6.5652 -9.1116 -1.2591 43 1 5.5956 -9.1626 1.0299 44 1 5.3780 -7.0595 2.2919 45 1 1.3160 -1.4777 -1.5773 46 1 2.3524 -0.0888 -2.0084 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267859681.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:17 Heat of formation + Delta-G solvation = -13.237013 kcal Electronic energy + Delta-G solvation = -26088.053688 eV Core-core repulsion = 22555.590108 eV Total energy + Delta-G solvation = -3532.463579 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.33892 -40.51528 -39.10310 -36.76397 -34.74021 -33.68049 -33.32769 -32.63888 -30.67316 -29.42982 -28.57066 -27.17805 -25.10670 -24.57979 -24.23582 -23.11469 -21.35079 -20.54634 -19.02525 -18.55828 -18.07056 -17.56612 -17.21133 -16.93851 -16.57259 -16.47756 -16.11833 -15.49442 -15.39348 -14.73183 -14.50472 -14.28528 -14.23608 -14.19350 -13.92891 -13.83841 -13.62861 -13.42471 -13.12145 -12.85425 -12.74054 -12.61720 -12.59699 -12.45266 -12.17425 -11.90416 -11.75335 -11.70126 -11.57450 -11.39442 -10.79407 -10.65308 -10.40844 -10.34119 -10.02331 -9.92538 -9.37920 -8.19314 -6.34061 0.14252 0.41338 0.54035 1.42689 1.43155 1.51352 2.29618 2.42815 2.51883 3.01826 3.10326 3.41643 3.48402 3.75368 3.83038 3.98940 4.03217 4.08035 4.18025 4.23983 4.27170 4.49025 4.49759 4.58532 4.60925 4.65274 4.69716 4.79201 4.83395 4.86589 4.88549 4.97695 5.03411 5.13116 5.17072 5.20156 5.21675 5.25378 5.28997 5.36062 5.53524 5.58509 5.61474 5.71741 5.82027 5.88728 6.06982 6.59343 6.83263 7.15331 7.34194 7.48788 8.85940 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.007118 B = 0.005781 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3932.685525 B = 4842.563061 C = 8026.320261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.090 4.090 3 H 0.085 0.915 4 C -0.112 4.112 5 C -0.098 4.098 6 C -0.041 4.041 7 C -0.227 4.227 8 C 0.543 3.457 9 O -0.571 6.571 10 N -0.593 5.593 11 C 0.259 3.741 12 C -0.544 4.544 13 H 0.050 0.950 14 C 0.024 3.976 15 N -0.919 5.919 16 Si 0.956 3.044 17 H -0.271 1.271 18 H -0.279 1.279 19 H -0.274 1.274 20 C 0.169 3.831 21 C 0.096 3.904 22 C -0.168 4.168 23 C -0.077 4.077 24 C -0.165 4.165 25 C 0.077 3.923 26 N -0.498 5.498 27 C -0.096 4.096 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.086 0.914 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.122 0.878 36 H 0.022 0.978 37 H 0.022 0.978 38 H 0.268 0.732 39 H 0.097 0.903 40 H 0.075 0.925 41 H 0.137 0.863 42 H 0.166 0.834 43 H 0.172 0.828 44 H 0.173 0.827 45 H 0.086 0.914 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.991 -2.161 10.530 12.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.109 4.109 3 H 0.103 0.897 4 C -0.150 4.150 5 C -0.135 4.135 6 C -0.043 4.043 7 C -0.248 4.248 8 C 0.336 3.664 9 O -0.454 6.454 10 N -0.323 5.323 11 C 0.138 3.862 12 C -0.583 4.583 13 H 0.068 0.932 14 C -0.176 4.176 15 N -0.558 5.558 16 Si 0.781 3.219 17 H -0.196 1.196 18 H -0.205 1.205 19 H -0.200 1.200 20 C 0.045 3.955 21 C -0.043 4.043 22 C -0.188 4.188 23 C -0.103 4.103 24 C -0.185 4.185 25 C -0.080 4.080 26 N -0.208 5.208 27 C -0.133 4.133 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.105 0.895 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.139 0.861 36 H 0.040 0.960 37 H 0.040 0.960 38 H 0.077 0.923 39 H 0.115 0.885 40 H 0.093 0.907 41 H 0.155 0.845 42 H 0.184 0.816 43 H 0.189 0.811 44 H 0.190 0.810 45 H 0.104 0.896 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.993 -1.364 11.402 12.953 hybrid contribution 0.847 -0.334 -1.628 1.865 sum -5.146 -1.698 9.774 11.176 Atomic orbital electron populations 1.21776 0.93147 1.02134 1.02610 1.21980 0.96780 0.99035 0.93087 0.89669 1.22630 0.94120 1.00043 0.98178 1.21631 0.98294 1.01569 0.91970 1.23181 0.93762 0.91014 0.96332 1.22064 0.98084 1.03899 1.00743 1.18712 0.83499 0.78796 0.85440 1.90633 1.72856 1.65273 1.16633 1.47994 1.27987 1.44573 1.11714 1.19040 0.95882 0.96153 0.75098 1.21620 1.29478 1.15149 0.92012 0.93163 1.25613 0.95782 0.97535 0.98671 1.70009 1.39009 1.35769 1.11060 0.85644 0.79209 0.79446 0.77606 1.19588 1.20456 1.19968 1.20101 0.88482 0.89298 0.97580 1.21633 0.96098 0.95893 0.90625 1.22209 1.01847 0.93610 1.01173 1.21979 0.94482 0.98166 0.95701 1.22520 0.99941 1.00636 0.95387 1.23281 0.96096 0.87779 1.00877 1.67535 1.09764 1.30598 1.12894 1.21486 0.94024 0.98484 0.99319 0.92745 0.91205 0.91933 0.89549 0.91257 0.91134 0.90727 0.86053 0.95955 0.96009 0.92290 0.88490 0.90660 0.84518 0.81641 0.81070 0.80994 0.89568 0.89905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.33 9.12 71.98 0.66 -1.67 16 2 C -0.09 -1.92 3.49 -9.68 -0.03 -1.96 16 3 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 4 C -0.11 -2.64 6.38 31.91 0.20 -2.43 16 5 C -0.10 -3.19 5.41 30.86 0.17 -3.02 16 6 C -0.04 -1.45 6.15 -17.01 -0.10 -1.56 16 7 C -0.23 -9.74 9.13 23.43 0.21 -9.52 16 8 C 0.54 25.47 7.62 86.57 0.66 26.13 16 9 O -0.57 -27.75 13.33 -4.06 -0.05 -27.81 16 10 N -0.59 -27.47 2.44 -834.80 -2.04 -29.51 16 11 C 0.26 13.03 4.88 85.63 0.42 13.45 16 12 C -0.54 -29.15 9.39 25.60 0.24 -28.91 16 13 H 0.05 2.75 7.81 -2.91 -0.02 2.73 16 14 C 0.02 1.30 5.46 84.65 0.46 1.76 16 15 N -0.92 -50.94 13.29 21.44 0.28 -50.65 16 16 Si 0.96 42.28 29.54 68.60 2.03 44.30 16 17 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 18 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 19 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 20 C 0.17 7.02 5.71 85.63 0.49 7.51 16 21 C 0.10 3.61 6.36 42.55 0.27 3.88 16 22 C -0.17 -5.35 9.72 22.36 0.22 -5.13 16 23 C -0.08 -1.90 10.18 22.47 0.23 -1.67 16 24 C -0.17 -3.72 10.11 22.36 0.23 -3.50 16 25 C 0.08 2.20 11.18 84.67 0.95 3.15 16 26 N -0.50 -18.84 10.27 -183.89 -1.89 -20.73 16 27 C -0.10 -2.61 6.19 30.52 0.19 -2.42 16 28 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.07 1.60 8.05 -2.39 -0.02 1.58 16 33 H 0.07 2.71 6.26 -2.39 -0.01 2.70 16 34 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 35 H 0.12 5.53 6.22 -2.91 -0.02 5.51 16 36 H 0.02 1.16 8.07 -2.39 -0.02 1.14 16 37 H 0.02 1.17 6.09 -2.39 -0.01 1.16 16 38 H 0.27 14.06 8.31 -92.71 -0.77 13.29 16 39 H 0.10 3.78 7.97 -2.38 -0.02 3.76 16 40 H 0.08 3.26 7.42 -2.39 -0.02 3.24 16 41 H 0.14 4.22 8.06 -2.91 -0.02 4.20 16 42 H 0.17 2.84 8.06 -2.91 -0.02 2.81 16 43 H 0.17 2.37 8.06 -2.91 -0.02 2.35 16 44 H 0.17 3.85 8.06 -2.91 -0.02 3.83 16 45 H 0.09 2.22 7.83 -2.39 -0.02 2.21 16 46 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -67.36 379.94 4.74 -62.62 By element: Atomic # 1 Polarization: 26.73 SS G_CDS: 0.96 Total: 27.69 kcal Atomic # 6 Polarization: -11.36 SS G_CDS: 5.45 Total: -5.91 kcal Atomic # 7 Polarization: -97.26 SS G_CDS: -3.64 Total: -100.90 kcal Atomic # 8 Polarization: -27.75 SS G_CDS: -0.05 Total: -27.81 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.30 kcal Total: -67.36 4.74 -62.62 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267859681.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.383 kcal (2) G-P(sol) polarization free energy of solvation -67.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds