Wall clock time and date at job start Tue Mar 31 2020 12:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 110.36556 * 2 1 4 4 C 1.54381 * 110.41310 * 122.35015 * 2 1 3 5 5 C 1.54264 * 105.06053 * 142.75169 * 4 2 1 6 6 H 1.09003 * 110.32275 * 241.00541 * 5 4 2 7 7 N 1.46494 * 110.32195 * 118.89548 * 5 4 2 8 8 C 1.34779 * 119.99656 * 156.42934 * 7 5 4 9 9 O 1.21590 * 120.00219 * 359.97438 * 8 7 5 10 10 C 1.47649 * 119.99933 * 180.02562 * 8 7 5 11 11 C 1.40013 * 119.89383 * 179.97438 * 10 8 7 12 12 C 1.36315 * 120.10259 * 179.97438 * 11 10 8 13 13 C 1.40890 * 119.89458 * 0.02562 * 12 11 10 14 14 C 1.41106 * 120.10223 * 179.71935 * 13 12 11 15 15 H 1.08004 * 120.00303 * 330.19273 * 14 13 12 16 16 C 1.40220 * 119.99977 * 150.19354 * 14 13 12 17 17 N 1.30652 * 120.00242 * 161.83649 * 16 14 13 18 18 Si 1.86807 * 120.00128 * 341.83346 * 16 14 13 19 19 H 1.48498 * 109.46978 * 95.40565 * 18 16 14 20 20 H 1.48496 * 109.47316 * 215.41031 * 18 16 14 21 21 H 1.48493 * 109.46703 * 335.41072 * 18 16 14 22 22 C 1.40883 * 119.79252 * 359.97438 * 13 12 11 23 23 C 1.36313 * 119.89195 * 359.97438 * 22 13 12 24 24 C 1.54384 * 105.14801 * 359.94782 * 5 4 2 25 25 N 1.48562 * 110.51359 * 237.58601 * 2 1 3 26 26 C 1.46892 * 111.00291 * 82.12704 * 25 2 1 27 27 C 1.53003 * 117.50324 * 248.62577 * 26 25 2 28 28 C 1.52998 * 117.50005 * 180.02562 * 26 25 2 29 29 H 1.08992 * 109.47293 * 299.10121 * 1 2 3 30 30 H 1.09000 * 109.47176 * 59.10697 * 1 2 3 31 31 H 1.09009 * 109.46999 * 179.10111 * 1 2 3 32 32 H 1.09001 * 110.32084 * 23.85590 * 4 2 1 33 33 H 1.08995 * 110.32343 * 261.64694 * 4 2 1 34 34 H 0.96996 * 120.00761 * 336.42563 * 7 5 4 35 35 H 1.07997 * 119.94535 * 0.02562 * 11 10 8 36 36 H 1.08008 * 120.05065 * 179.97438 * 12 11 10 37 37 H 0.97004 * 119.99664 * 179.97438 * 17 16 14 38 38 H 1.07997 * 120.05353 * 179.97438 * 22 13 12 39 39 H 1.08004 * 119.94615 * 180.02562 * 23 22 13 40 40 H 1.09003 * 110.41104 * 94.97806 * 24 5 4 41 41 H 1.08999 * 110.41054 * 217.42037 * 24 5 4 42 42 H 1.08999 * 115.55109 * 34.32740 * 26 25 2 43 43 H 1.09008 * 117.49191 * 359.97438 * 27 26 25 44 44 H 1.08992 * 117.50187 * 145.01643 * 27 26 25 45 45 H 1.09001 * 117.49680 * 214.97719 * 28 26 25 46 46 H 1.08993 * 117.50212 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9093 1.0219 0.0000 4 6 2.0684 -0.7742 1.2223 5 6 3.3196 -1.5156 0.7078 6 1 3.1903 -2.5930 0.8109 7 7 4.5094 -1.0744 1.4398 8 6 5.5906 -1.8756 1.5138 9 8 5.5783 -2.9648 0.9736 10 6 6.7896 -1.4312 2.2520 11 6 7.9114 -2.2655 2.3280 12 6 9.0208 -1.8593 3.0080 13 6 9.0372 -0.5978 3.6353 14 6 10.1811 -0.1753 4.3453 15 1 10.8189 -0.9035 4.8243 16 6 10.4897 1.1899 4.4290 17 7 11.3110 1.6188 5.3502 18 14 9.7267 2.3957 3.2233 19 1 8.5158 3.0037 3.8309 20 1 10.7084 3.4626 2.9021 21 1 9.3495 1.6791 1.9787 22 6 7.9060 0.2382 3.5560 23 6 6.8015 -0.1763 2.8729 24 6 3.4330 -1.1294 -0.7826 25 7 2.0506 -0.7458 -1.1746 26 6 2.0591 0.1013 -2.3746 27 6 1.0753 -0.2480 -3.4931 28 6 2.5691 -0.5217 -3.6756 29 1 -0.3633 0.4998 0.8979 30 1 -0.3633 0.5276 -0.8819 31 1 -0.3633 -1.0276 -0.0161 32 1 1.3243 -1.4878 1.5762 33 1 2.3396 -0.0820 2.0194 34 1 4.5191 -0.2056 1.8710 35 1 7.8980 -3.2321 1.8465 36 1 9.8856 -2.5037 3.0664 37 1 11.5248 2.5632 5.4078 38 1 7.9138 1.2057 4.0356 39 1 5.9340 0.4640 2.8112 40 1 4.1108 -0.2847 -0.9060 41 1 3.7744 -1.9810 -1.3711 42 1 2.2734 1.1563 -2.2038 43 1 0.4220 -1.1068 -3.3386 44 1 0.6421 0.5772 -4.0582 45 1 3.1189 0.1234 -4.3609 46 1 2.8986 -1.5601 -3.6411 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000270396956.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:32 Heat of formation + Delta-G solvation = 8.442853 kcal Electronic energy + Delta-G solvation = -25568.788044 eV Core-core repulsion = 22037.264574 eV Total energy + Delta-G solvation = -3531.523470 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.06026 -38.85861 -37.38971 -36.32411 -33.89452 -33.76554 -31.24451 -30.79886 -30.04789 -29.07414 -26.00694 -25.50853 -22.79982 -22.42325 -21.64337 -21.40627 -20.49410 -20.31988 -19.80869 -17.65344 -17.28387 -16.64464 -16.01980 -15.51278 -15.13707 -14.86399 -14.53827 -14.16256 -13.90297 -13.81379 -13.65931 -13.52312 -12.90778 -12.81092 -12.69184 -12.56492 -12.26799 -12.08676 -12.00688 -11.84527 -11.72119 -11.45831 -11.31992 -11.02842 -10.92328 -10.80187 -10.59000 -10.42845 -10.30271 -10.25094 -9.77183 -9.37697 -9.13616 -8.83709 -8.62091 -7.98732 -7.77044 -7.24904 -4.75565 1.97372 2.64252 2.91051 3.05074 3.14246 3.36068 3.57925 3.63954 3.77852 3.85165 4.37387 4.45841 4.55708 4.69984 4.76047 4.83857 5.04899 5.15476 5.20549 5.26944 5.28670 5.37062 5.44225 5.51674 5.58046 5.70834 5.72100 5.74839 5.75453 5.81346 5.95758 5.98790 5.99108 6.05457 6.12308 6.40728 6.52936 6.59107 6.70341 6.88716 6.91169 6.94879 7.21148 7.34363 7.50215 7.65252 7.90923 8.05296 8.08425 8.42084 8.51761 8.90687 9.74970 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.018886 B = 0.002908 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.251846 B = 9627.631236 C =10008.824054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.062 3.938 3 H 0.053 0.947 4 C -0.128 4.128 5 C 0.145 3.855 6 H 0.097 0.903 7 N -0.736 5.736 8 C 0.573 3.427 9 O -0.568 6.568 10 C -0.285 4.285 11 C -0.017 4.017 12 C -0.222 4.222 13 C 0.107 3.893 14 C -0.424 4.424 15 H 0.097 0.903 16 C 0.082 3.918 17 N -0.786 5.786 18 Si 0.916 3.084 19 H -0.267 1.267 20 H -0.287 1.287 21 H -0.241 1.241 22 C -0.248 4.248 23 C -0.036 4.036 24 C 0.028 3.972 25 N -0.479 5.479 26 C -0.005 4.005 27 C -0.161 4.161 28 C -0.172 4.172 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.063 0.937 32 H 0.083 0.917 33 H 0.076 0.924 34 H 0.396 0.604 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.291 0.709 38 H 0.103 0.897 39 H 0.093 0.907 40 H 0.050 0.950 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.100 0.900 44 H 0.092 0.908 45 H 0.094 0.906 46 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.367 2.460 -10.376 20.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.047 4.047 3 H 0.071 0.929 4 C -0.167 4.167 5 C 0.039 3.961 6 H 0.115 0.885 7 N -0.389 5.389 8 C 0.367 3.633 9 O -0.449 6.449 10 C -0.289 4.289 11 C -0.036 4.036 12 C -0.241 4.241 13 C 0.103 3.897 14 C -0.451 4.451 15 H 0.115 0.885 16 C -0.141 4.141 17 N -0.408 5.408 18 Si 0.742 3.258 19 H -0.193 1.193 20 H -0.215 1.215 21 H -0.164 1.164 22 C -0.267 4.267 23 C -0.055 4.055 24 C -0.100 4.100 25 N -0.204 5.204 26 C -0.114 4.114 27 C -0.199 4.199 28 C -0.210 4.210 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.102 0.898 33 H 0.095 0.905 34 H 0.231 0.769 35 H 0.125 0.875 36 H 0.124 0.876 37 H 0.102 0.898 38 H 0.121 0.879 39 H 0.111 0.889 40 H 0.069 0.931 41 H 0.104 0.896 42 H 0.105 0.895 43 H 0.118 0.882 44 H 0.110 0.890 45 H 0.112 0.888 46 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -17.511 1.390 -10.714 20.576 hybrid contribution 0.377 1.947 0.041 1.984 sum -17.135 3.338 -10.673 20.461 Atomic orbital electron populations 1.21683 0.93596 1.02519 1.01343 1.22635 0.96248 0.95792 0.89981 0.92936 1.22710 0.97166 0.99606 0.97183 1.21481 0.84273 1.00405 0.89915 0.88514 1.46072 1.14742 1.21441 1.56693 1.18533 0.82554 0.83432 0.78749 1.90654 1.83048 1.22293 1.48915 1.18917 0.96182 0.98852 1.14964 1.20454 0.91527 0.96940 0.94665 1.20749 0.98501 0.99255 1.05587 1.17858 0.92071 0.91750 0.88009 1.19764 1.07334 0.93020 1.24987 0.88539 1.26370 0.93419 0.99585 0.94699 1.69611 1.26614 1.18158 1.26415 0.86223 0.78283 0.78703 0.82617 1.19299 1.21467 1.16407 1.20697 0.94953 1.01751 1.09321 1.20401 0.96510 0.93963 0.94633 1.23526 0.89263 1.00890 0.96364 1.65200 1.18074 1.35479 1.01610 1.22559 1.06171 0.95347 0.87361 1.23003 0.92747 1.03438 1.00698 1.23012 0.97186 1.02419 0.98361 0.92350 0.92655 0.91769 0.89836 0.90496 0.76877 0.87519 0.87618 0.89821 0.87902 0.88914 0.93142 0.89558 0.89497 0.88196 0.88987 0.88780 0.88240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.09 9.34 37.16 0.35 -0.74 16 2 C 0.06 0.60 2.88 -66.07 -0.19 0.41 16 3 H 0.05 0.51 7.82 -51.93 -0.41 0.11 16 4 C -0.13 -1.30 6.31 -25.35 -0.16 -1.46 16 5 C 0.15 1.93 3.38 -66.55 -0.22 1.71 16 6 H 0.10 1.47 7.60 -51.93 -0.39 1.07 16 7 N -0.74 -11.21 5.02 -53.46 -0.27 -11.48 16 8 C 0.57 11.24 7.76 -12.42 -0.10 11.15 16 9 O -0.57 -12.63 16.00 5.29 0.08 -12.55 16 10 C -0.28 -6.01 5.89 -104.73 -0.62 -6.63 16 11 C -0.02 -0.37 9.52 -39.61 -0.38 -0.74 16 12 C -0.22 -5.05 9.73 -39.27 -0.38 -5.44 16 13 C 0.11 2.57 5.10 -106.81 -0.55 2.03 16 14 C -0.42 -10.74 9.56 -37.75 -0.36 -11.10 16 15 H 0.10 2.54 8.06 -52.48 -0.42 2.12 16 16 C 0.08 1.99 5.40 -17.31 -0.09 1.90 16 17 N -0.79 -19.41 13.92 55.56 0.77 -18.64 16 18 Si 0.92 19.31 24.52 -169.99 -4.17 15.14 16 19 H -0.27 -5.39 6.71 56.52 0.38 -5.01 16 20 H -0.29 -5.84 7.11 56.52 0.40 -5.44 16 21 H -0.24 -5.27 6.87 56.52 0.39 -4.88 16 22 C -0.25 -5.58 7.12 -39.27 -0.28 -5.86 16 23 C -0.04 -0.73 9.47 -39.61 -0.38 -1.10 16 24 C 0.03 0.36 5.92 -2.09 -0.01 0.35 16 25 N -0.48 -5.27 5.21 -214.10 -1.12 -6.38 16 26 C -0.01 -0.05 4.94 -67.72 -0.33 -0.38 16 27 C -0.16 -1.36 10.46 -26.75 -0.28 -1.64 16 28 C -0.17 -1.59 10.08 -26.76 -0.27 -1.86 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.44 8.11 -51.93 -0.42 0.02 16 31 H 0.06 0.55 8.14 -51.92 -0.42 0.12 16 32 H 0.08 0.79 7.86 -51.93 -0.41 0.39 16 33 H 0.08 0.72 7.65 -51.93 -0.40 0.32 16 34 H 0.40 5.30 6.33 -40.82 -0.26 5.04 16 35 H 0.11 2.26 7.63 -52.49 -0.40 1.86 16 36 H 0.11 2.26 8.06 -52.48 -0.42 1.84 16 37 H 0.29 6.44 8.29 -40.82 -0.34 6.10 16 38 H 0.10 2.26 4.73 -52.49 -0.25 2.01 16 39 H 0.09 1.53 6.37 -52.48 -0.33 1.20 16 40 H 0.05 0.69 7.91 -51.93 -0.41 0.28 16 41 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.09 0.84 7.88 -51.93 -0.41 0.44 16 43 H 0.10 0.88 8.14 -51.92 -0.42 0.45 16 44 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 369.53 15.07 5.57 5.57 Total: -1.00 -27.36 369.53 -10.44 -37.80 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: -7.06 Total: 9.97 kcal Atomic # 6 Polarization: -15.17 SS G_CDS: -4.25 Total: -19.42 kcal Atomic # 7 Polarization: -35.89 SS G_CDS: -0.61 Total: -36.51 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: 0.08 Total: -12.55 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -4.17 Total: 15.14 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -27.36 -10.44 -37.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270396956.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.240 kcal (2) G-P(sol) polarization free energy of solvation -27.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds