Wall clock time and date at job start Tue Mar 31 2020 12:05:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 110.36556 * 2 1 4 4 C 1.54381 * 110.41310 * 122.35015 * 2 1 3 5 5 C 1.54264 * 105.06053 * 142.75169 * 4 2 1 6 6 H 1.09003 * 110.32275 * 241.00541 * 5 4 2 7 7 N 1.46494 * 110.32195 * 118.89548 * 5 4 2 8 8 C 1.34779 * 119.99656 * 156.42934 * 7 5 4 9 9 O 1.21590 * 120.00219 * 359.97438 * 8 7 5 10 10 C 1.47649 * 119.99933 * 180.02562 * 8 7 5 11 11 C 1.40013 * 119.89383 * 179.97438 * 10 8 7 12 12 C 1.36315 * 120.10259 * 179.97438 * 11 10 8 13 13 C 1.40890 * 119.89458 * 0.02562 * 12 11 10 14 14 C 1.41106 * 120.10223 * 179.71935 * 13 12 11 15 15 H 1.08004 * 120.00303 * 330.19273 * 14 13 12 16 16 C 1.40220 * 119.99977 * 150.19354 * 14 13 12 17 17 N 1.30652 * 120.00242 * 161.83649 * 16 14 13 18 18 Si 1.86807 * 120.00128 * 341.83346 * 16 14 13 19 19 H 1.48498 * 109.46978 * 95.40565 * 18 16 14 20 20 H 1.48496 * 109.47316 * 215.41031 * 18 16 14 21 21 H 1.48493 * 109.46703 * 335.41072 * 18 16 14 22 22 C 1.40883 * 119.79252 * 359.97438 * 13 12 11 23 23 C 1.36313 * 119.89195 * 359.97438 * 22 13 12 24 24 C 1.54384 * 105.14801 * 359.94782 * 5 4 2 25 25 N 1.48562 * 110.51359 * 237.58601 * 2 1 3 26 26 C 1.46892 * 111.00291 * 82.12704 * 25 2 1 27 27 C 1.53003 * 117.50324 * 248.62577 * 26 25 2 28 28 C 1.52998 * 117.50005 * 180.02562 * 26 25 2 29 29 H 1.08992 * 109.47293 * 299.10121 * 1 2 3 30 30 H 1.09000 * 109.47176 * 59.10697 * 1 2 3 31 31 H 1.09009 * 109.46999 * 179.10111 * 1 2 3 32 32 H 1.09001 * 110.32084 * 23.85590 * 4 2 1 33 33 H 1.08995 * 110.32343 * 261.64694 * 4 2 1 34 34 H 0.96996 * 120.00761 * 336.42563 * 7 5 4 35 35 H 1.07997 * 119.94535 * 0.02562 * 11 10 8 36 36 H 1.08008 * 120.05065 * 179.97438 * 12 11 10 37 37 H 0.97004 * 119.99664 * 179.97438 * 17 16 14 38 38 H 1.07997 * 120.05353 * 179.97438 * 22 13 12 39 39 H 1.08004 * 119.94615 * 180.02562 * 23 22 13 40 40 H 1.09003 * 110.41104 * 94.97806 * 24 5 4 41 41 H 1.08999 * 110.41054 * 217.42037 * 24 5 4 42 42 H 1.08999 * 115.55109 * 34.32740 * 26 25 2 43 43 H 1.09008 * 117.49191 * 359.97438 * 27 26 25 44 44 H 1.08992 * 117.50187 * 145.01643 * 27 26 25 45 45 H 1.09001 * 117.49680 * 214.97719 * 28 26 25 46 46 H 1.08993 * 117.50212 * 359.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9093 1.0219 0.0000 4 6 2.0684 -0.7742 1.2223 5 6 3.3196 -1.5156 0.7078 6 1 3.1903 -2.5930 0.8109 7 7 4.5094 -1.0744 1.4398 8 6 5.5906 -1.8756 1.5138 9 8 5.5783 -2.9648 0.9736 10 6 6.7896 -1.4312 2.2520 11 6 7.9114 -2.2655 2.3280 12 6 9.0208 -1.8593 3.0080 13 6 9.0372 -0.5978 3.6353 14 6 10.1811 -0.1753 4.3453 15 1 10.8189 -0.9035 4.8243 16 6 10.4897 1.1899 4.4290 17 7 11.3110 1.6188 5.3502 18 14 9.7267 2.3957 3.2233 19 1 8.5158 3.0037 3.8309 20 1 10.7084 3.4626 2.9021 21 1 9.3495 1.6791 1.9787 22 6 7.9060 0.2382 3.5560 23 6 6.8015 -0.1763 2.8729 24 6 3.4330 -1.1294 -0.7826 25 7 2.0506 -0.7458 -1.1746 26 6 2.0591 0.1013 -2.3746 27 6 1.0753 -0.2480 -3.4931 28 6 2.5691 -0.5217 -3.6756 29 1 -0.3633 0.4998 0.8979 30 1 -0.3633 0.5276 -0.8819 31 1 -0.3633 -1.0276 -0.0161 32 1 1.3243 -1.4878 1.5762 33 1 2.3396 -0.0820 2.0194 34 1 4.5191 -0.2056 1.8710 35 1 7.8980 -3.2321 1.8465 36 1 9.8856 -2.5037 3.0664 37 1 11.5248 2.5632 5.4078 38 1 7.9138 1.2057 4.0356 39 1 5.9340 0.4640 2.8112 40 1 4.1108 -0.2847 -0.9060 41 1 3.7744 -1.9810 -1.3711 42 1 2.2734 1.1563 -2.2038 43 1 0.4220 -1.1068 -3.3386 44 1 0.6421 0.5772 -4.0582 45 1 3.1189 0.1234 -4.3609 46 1 2.8986 -1.5601 -3.6411 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000270396956.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:32 Heat of formation + Delta-G solvation = -7.726464 kcal Electronic energy + Delta-G solvation = -25569.489198 eV Core-core repulsion = 22037.264574 eV Total energy + Delta-G solvation = -3532.224624 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.26058 -40.16287 -38.99712 -37.25395 -35.67616 -35.02604 -32.68484 -31.92114 -31.70061 -30.24346 -27.59136 -26.46753 -24.11810 -23.27439 -23.12092 -22.75063 -21.55088 -21.32113 -21.11082 -19.48099 -18.74951 -17.70194 -17.37650 -16.80492 -16.22793 -15.90010 -15.80540 -15.70155 -15.36473 -15.26857 -15.05583 -14.61877 -14.35751 -14.26355 -13.96367 -13.76885 -13.65691 -13.34447 -12.94035 -12.78985 -12.74157 -12.65225 -12.44535 -12.31336 -12.22120 -12.10192 -11.99295 -11.69149 -11.54066 -11.31054 -11.09677 -11.01899 -10.75357 -10.14318 -9.72497 -9.57190 -9.49309 -9.04667 -6.64159 0.25167 0.87965 1.23860 1.37844 1.48453 1.95768 2.09489 2.21658 2.67252 2.80506 2.93132 3.45343 3.55957 3.64222 3.95039 4.00182 4.07046 4.12778 4.17825 4.20927 4.25875 4.32020 4.37243 4.47524 4.65140 4.66248 4.71390 4.77582 4.83622 4.85761 4.91058 4.96092 5.01750 5.02398 5.06565 5.15902 5.17139 5.29171 5.40193 5.44237 5.51027 5.57606 5.75051 5.80745 5.84655 6.10329 6.11201 6.24630 6.58147 6.65065 6.68938 7.38785 8.01404 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.018886 B = 0.002908 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.251846 B = 9627.631236 C =10008.824054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.062 3.938 3 H 0.058 0.942 4 C -0.120 4.120 5 C 0.142 3.858 6 H 0.076 0.924 7 N -0.716 5.716 8 C 0.574 3.426 9 O -0.597 6.597 10 C -0.281 4.281 11 C -0.025 4.025 12 C -0.234 4.234 13 C 0.095 3.905 14 C -0.463 4.463 15 H 0.064 0.936 16 C 0.050 3.950 17 N -0.823 5.823 18 Si 0.967 3.033 19 H -0.245 1.245 20 H -0.275 1.275 21 H -0.254 1.254 22 C -0.258 4.258 23 C -0.027 4.027 24 C 0.035 3.965 25 N -0.483 5.483 26 C -0.018 4.018 27 C -0.145 4.145 28 C -0.179 4.179 29 H 0.073 0.927 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.409 0.591 35 H 0.110 0.890 36 H 0.107 0.893 37 H 0.301 0.699 38 H 0.112 0.888 39 H 0.139 0.861 40 H 0.044 0.956 41 H 0.065 0.935 42 H 0.093 0.907 43 H 0.096 0.904 44 H 0.111 0.889 45 H 0.104 0.896 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.737 4.527 -11.525 24.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.046 4.046 3 H 0.076 0.924 4 C -0.158 4.158 5 C 0.037 3.963 6 H 0.094 0.906 7 N -0.369 5.369 8 C 0.367 3.633 9 O -0.481 6.481 10 C -0.285 4.285 11 C -0.044 4.044 12 C -0.253 4.253 13 C 0.091 3.909 14 C -0.491 4.491 15 H 0.082 0.918 16 C -0.169 4.169 17 N -0.447 5.447 18 Si 0.789 3.211 19 H -0.169 1.169 20 H -0.202 1.202 21 H -0.177 1.177 22 C -0.277 4.277 23 C -0.046 4.046 24 C -0.094 4.094 25 N -0.208 5.208 26 C -0.127 4.127 27 C -0.183 4.183 28 C -0.217 4.217 29 H 0.092 0.908 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.247 0.753 35 H 0.129 0.871 36 H 0.125 0.875 37 H 0.112 0.888 38 H 0.129 0.871 39 H 0.156 0.844 40 H 0.062 0.938 41 H 0.083 0.917 42 H 0.111 0.889 43 H 0.114 0.886 44 H 0.130 0.870 45 H 0.123 0.877 46 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -20.913 3.482 -11.849 24.287 hybrid contribution 1.279 1.139 0.295 1.738 sum -19.634 4.621 -11.554 23.245 Atomic orbital electron populations 1.21648 0.92178 1.02467 1.02307 1.22723 0.97297 0.95675 0.88925 0.92380 1.22709 0.95465 0.99818 0.97825 1.21584 0.84673 0.99784 0.90275 0.90558 1.45903 1.14034 1.21180 1.55767 1.18354 0.83136 0.83414 0.78423 1.90652 1.83632 1.23715 1.50054 1.19268 0.96351 0.98946 1.13983 1.20608 0.91806 0.97494 0.94514 1.20875 0.99133 0.99327 1.05958 1.18020 0.92353 0.92494 0.88007 1.19711 1.08450 0.93437 1.27463 0.91760 1.27019 0.93700 1.00409 0.95745 1.69623 1.28109 1.19207 1.27781 0.85468 0.78696 0.76980 0.80005 1.16930 1.20164 1.17746 1.20863 0.94955 1.01992 1.09855 1.20756 0.97234 0.93809 0.92761 1.23316 0.90529 0.99831 0.95714 1.65214 1.16431 1.36565 1.02618 1.22668 1.07509 0.95398 0.87100 1.23042 0.92040 1.03737 0.99463 1.23036 0.98301 1.01838 0.98519 0.90764 0.92367 0.92295 0.88906 0.88844 0.75349 0.87150 0.87505 0.88772 0.87080 0.84367 0.93807 0.91658 0.88935 0.88594 0.87035 0.87719 0.89666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.64 9.34 71.98 0.67 -0.97 16 2 C 0.06 1.00 2.88 45.06 0.13 1.12 16 3 H 0.06 0.90 7.82 -2.38 -0.02 0.88 16 4 C -0.12 -2.03 6.31 31.49 0.20 -1.83 16 5 C 0.14 3.49 3.38 45.89 0.16 3.65 16 6 H 0.08 2.23 7.60 -2.39 -0.02 2.22 16 7 N -0.72 -19.80 5.02 -441.32 -2.22 -22.01 16 8 C 0.57 21.48 7.76 86.73 0.67 22.15 16 9 O -0.60 -26.15 16.00 -4.00 -0.06 -26.22 16 10 C -0.28 -11.36 5.89 -19.93 -0.12 -11.48 16 11 C -0.03 -1.10 9.52 22.25 0.21 -0.89 16 12 C -0.23 -10.87 9.73 22.47 0.22 -10.65 16 13 C 0.09 4.61 5.10 -21.28 -0.11 4.50 16 14 C -0.46 -24.42 9.56 23.46 0.22 -24.20 16 15 H 0.06 3.65 8.06 -2.91 -0.02 3.63 16 16 C 0.05 2.47 5.40 85.35 0.46 2.93 16 17 N -0.82 -41.63 13.92 21.87 0.30 -41.33 16 18 Si 0.97 38.75 24.52 68.60 1.68 40.43 16 19 H -0.24 -8.88 6.71 99.48 0.67 -8.21 16 20 H -0.28 -10.39 7.11 99.48 0.71 -9.69 16 21 H -0.25 -10.61 6.87 99.48 0.68 -9.92 16 22 C -0.26 -11.16 7.12 22.47 0.16 -11.00 16 23 C -0.03 -1.01 9.47 22.25 0.21 -0.80 16 24 C 0.04 0.86 5.92 86.42 0.51 1.37 16 25 N -0.48 -9.64 5.21 -831.29 -4.33 -13.97 16 26 C -0.02 -0.31 4.94 44.92 0.22 -0.09 16 27 C -0.15 -2.09 10.46 30.58 0.32 -1.77 16 28 C -0.18 -3.05 10.08 30.58 0.31 -2.74 16 29 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 30 H 0.06 0.73 8.11 -2.39 -0.02 0.71 16 31 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 32 H 0.09 1.45 7.86 -2.39 -0.02 1.43 16 33 H 0.09 1.31 7.65 -2.39 -0.02 1.29 16 34 H 0.41 9.18 6.33 -92.71 -0.59 8.60 16 35 H 0.11 4.70 7.63 -2.91 -0.02 4.68 16 36 H 0.11 4.79 8.06 -2.91 -0.02 4.76 16 37 H 0.30 13.46 8.29 -92.71 -0.77 12.70 16 38 H 0.11 4.61 4.73 -2.91 -0.01 4.60 16 39 H 0.14 3.86 6.37 -2.91 -0.02 3.84 16 40 H 0.04 1.12 7.91 -2.39 -0.02 1.10 16 41 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.09 1.53 7.88 -2.39 -0.02 1.51 16 43 H 0.10 1.48 8.14 -2.38 -0.02 1.46 16 44 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 46 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -60.64 369.53 0.16 -60.48 By element: Atomic # 1 Polarization: 32.96 SS G_CDS: 0.33 Total: 33.30 kcal Atomic # 6 Polarization: -35.13 SS G_CDS: 4.45 Total: -30.68 kcal Atomic # 7 Polarization: -71.07 SS G_CDS: -6.25 Total: -77.31 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: -0.06 Total: -26.22 kcal Atomic # 14 Polarization: 38.75 SS G_CDS: 1.68 Total: 40.43 kcal Total: -60.64 0.16 -60.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000270396956.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.755 kcal (2) G-P(sol) polarization free energy of solvation -60.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds