Wall clock time and date at job start Tue Mar 31 2020 10:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.47111 * 2 1 4 4 H 1.08998 * 109.46918 * 54.99668 * 3 2 1 5 5 C 1.50698 * 109.47340 * 174.99925 * 3 2 1 6 6 H 1.08005 * 120.00133 * 119.99301 * 5 3 2 7 7 C 1.37879 * 120.00159 * 300.00294 * 5 3 2 8 8 N 1.31513 * 119.99538 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 120.00341 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47134 * 89.99393 * 9 7 5 11 11 H 1.48498 * 109.47276 * 209.99834 * 9 7 5 12 12 H 1.48503 * 109.46975 * 329.99749 * 9 7 5 13 13 N 1.46505 * 109.46817 * 295.00153 * 3 2 1 14 14 C 1.34769 * 120.00075 * 84.99902 * 13 3 2 15 15 O 1.21277 * 120.00563 * 0.02562 * 14 13 3 16 16 C 1.50703 * 119.99858 * 179.97438 * 14 13 3 17 17 C 1.53004 * 109.47349 * 180.02562 * 16 14 13 18 18 H 1.09004 * 109.46529 * 54.99822 * 17 16 14 19 19 C 1.52995 * 109.46956 * 295.00303 * 17 16 14 20 20 C 1.50694 * 109.47162 * 175.00117 * 17 16 14 21 21 C 1.34234 * 126.50481 * 60.33906 * 20 17 16 22 22 N 1.36830 * 109.93384 * 180.14765 * 21 20 17 23 23 H 0.97001 * 125.06783 * 179.82141 * 22 21 20 24 24 C 1.37689 * 109.86882 * 359.54926 * 22 21 20 25 25 C 1.39134 * 133.50571 * 180.26034 * 24 22 21 26 26 C 1.37745 * 119.77479 * 180.02562 * 25 24 22 27 27 C 1.38830 * 120.67221 * 0.02562 * 26 25 24 28 28 C 1.36628 * 120.52453 * 359.97438 * 27 26 25 29 29 C 1.39628 * 119.76381 * 359.97438 * 28 27 26 30 30 H 1.09005 * 109.47275 * 60.00018 * 1 2 3 31 31 H 1.08993 * 109.47362 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47234 * 300.00155 * 1 2 3 33 33 H 1.08996 * 109.47185 * 240.00336 * 2 1 3 34 34 H 1.08999 * 109.47254 * 119.99541 * 2 1 3 35 35 H 0.97006 * 120.00046 * 180.02562 * 8 7 5 36 36 H 0.97000 * 119.99204 * 264.99901 * 13 3 2 37 37 H 1.08997 * 109.46996 * 59.99845 * 16 14 13 38 38 H 1.08999 * 109.47127 * 299.99992 * 16 14 13 39 39 H 1.09001 * 109.47469 * 59.99432 * 19 17 16 40 40 H 1.08997 * 109.47193 * 179.97438 * 19 17 16 41 41 H 1.09001 * 109.47477 * 299.99823 * 19 17 16 42 42 H 1.07999 * 125.03333 * 359.97438 * 21 20 17 43 43 H 1.08000 * 120.10688 * 359.97438 * 25 24 22 44 44 H 1.08006 * 119.66035 * 180.02562 * 26 25 24 45 45 H 1.07995 * 119.73837 * 179.97438 * 27 26 25 46 46 H 1.07999 * 120.11413 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5418 1.4444 0.1238 6 1 4.1472 1.8889 -0.6524 7 6 4.1433 0.8785 1.2280 8 7 3.4061 0.3375 2.1732 9 14 6.0049 0.8801 1.3812 10 1 6.4427 2.1131 2.0836 11 1 6.4390 -0.3109 2.1546 12 1 6.6130 0.8396 0.0270 13 7 1.6523 2.0975 -1.2519 14 6 0.4350 2.6643 -1.3670 15 8 -0.3394 2.6327 -0.4342 16 6 0.0366 3.3385 -2.6545 17 6 -1.3823 3.8953 -2.5209 18 1 -1.4346 4.5517 -1.6522 19 6 -2.3694 2.7394 -2.3469 20 6 -1.7350 4.6746 -3.7615 21 6 -1.7838 4.1996 -5.0160 22 7 -2.1375 5.1998 -5.8802 23 1 -2.2354 5.0985 -6.8399 24 6 -2.3397 6.3702 -5.1837 25 6 -2.7087 7.6577 -5.5607 26 6 -2.8307 8.6419 -4.6047 27 6 -2.5887 8.3632 -3.2664 28 6 -2.2253 7.1059 -2.8741 29 6 -2.0966 6.0927 -3.8262 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.8292 -0.0603 2.9503 36 1 2.2719 2.1231 -1.9978 37 1 0.0680 2.6145 -3.4686 38 1 0.7279 4.1540 -2.8668 39 1 -2.1142 2.1756 -1.4496 40 1 -3.3801 3.1360 -2.2512 41 1 -2.3170 2.0829 -3.2155 42 1 -1.5721 3.1798 -5.3015 43 1 -2.8979 7.8847 -6.5995 44 1 -3.1176 9.6406 -4.8994 45 1 -2.6884 9.1464 -2.5296 46 1 -2.0382 6.8965 -1.8313 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000280339325.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:27:42 Heat of formation + Delta-G solvation = -0.180978 kcal Electronic energy + Delta-G solvation = -25745.877455 eV Core-core repulsion = 22213.980028 eV Total energy + Delta-G solvation = -3531.897427 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.38550 -39.10938 -37.06213 -35.56198 -34.42142 -32.32445 -31.40425 -30.88096 -29.45281 -28.40729 -27.65950 -26.44809 -23.31953 -22.92886 -22.54819 -21.80559 -20.20331 -19.22532 -18.70368 -17.92034 -17.01892 -16.39680 -15.69135 -15.50157 -15.21813 -14.85724 -14.60027 -14.24218 -14.10891 -13.91707 -13.66095 -13.33483 -12.81716 -12.73491 -12.61768 -12.42275 -11.92596 -11.76839 -11.66942 -11.52138 -11.21931 -11.18281 -10.95313 -10.89263 -10.81160 -10.71984 -10.48159 -10.28504 -10.10823 -9.62868 -9.57679 -9.00963 -8.78168 -8.45163 -8.30251 -7.73157 -7.68523 -6.09480 -4.18489 1.04853 1.54958 2.62090 3.01986 3.25922 3.32715 3.34332 3.53869 3.84004 4.19764 4.42670 4.63639 4.72855 4.92002 5.03062 5.15750 5.21642 5.24078 5.36576 5.41614 5.53003 5.58492 5.75696 5.83378 5.87572 5.89765 5.93897 6.13323 6.33246 6.35973 6.42867 6.48976 6.51196 6.54987 6.62704 6.68736 6.73650 6.82549 7.08547 7.09015 7.24923 7.42099 7.42684 7.54767 7.66350 7.79030 7.95608 8.22861 8.76270 8.83274 9.25016 9.49634 10.95785 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.021004 B = 0.002733 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.743818 B =10243.887930 C =10717.409930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.270 3.730 4 H 0.048 0.952 5 C -0.533 4.533 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.712 5.712 14 C 0.500 3.500 15 O -0.547 6.547 16 C -0.134 4.134 17 C 0.002 3.998 18 H 0.083 0.917 19 C -0.146 4.146 20 C -0.151 4.151 21 C 0.047 3.953 22 N -0.598 5.598 23 H 0.413 0.587 24 C 0.094 3.906 25 C -0.135 4.135 26 C -0.101 4.101 27 C -0.151 4.151 28 C -0.065 4.065 29 C -0.101 4.101 30 H 0.040 0.960 31 H 0.020 0.980 32 H 0.049 0.951 33 H 0.029 0.971 34 H 0.097 0.903 35 H 0.264 0.736 36 H 0.387 0.613 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.047 0.953 41 H 0.043 0.957 42 H 0.168 0.832 43 H 0.116 0.884 44 H 0.122 0.878 45 H 0.120 0.880 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.411 10.436 -16.699 22.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.168 3.832 4 H 0.066 0.934 5 C -0.572 4.572 6 H 0.078 0.922 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.727 3.273 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.359 5.359 14 C 0.286 3.714 15 O -0.426 6.426 16 C -0.175 4.175 17 C -0.018 4.018 18 H 0.102 0.898 19 C -0.203 4.203 20 C -0.158 4.158 21 C -0.078 4.078 22 N -0.200 5.200 23 H 0.250 0.750 24 C -0.013 4.013 25 C -0.156 4.156 26 C -0.120 4.120 27 C -0.171 4.171 28 C -0.084 4.084 29 C -0.106 4.106 30 H 0.059 0.941 31 H 0.039 0.961 32 H 0.068 0.932 33 H 0.048 0.952 34 H 0.115 0.885 35 H 0.074 0.926 36 H 0.219 0.781 37 H 0.101 0.899 38 H 0.103 0.897 39 H 0.102 0.898 40 H 0.066 0.934 41 H 0.062 0.938 42 H 0.185 0.815 43 H 0.134 0.866 44 H 0.140 0.860 45 H 0.138 0.862 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -11.928 10.237 -15.946 22.391 hybrid contribution 1.347 -0.096 -0.865 1.604 sum -10.581 10.141 -16.812 22.303 Atomic orbital electron populations 1.21843 0.98336 0.97903 1.01317 1.21921 0.92644 0.99919 1.02103 1.18740 0.94014 0.89128 0.81280 0.93377 1.21257 0.90912 1.38799 1.06186 0.92195 1.24885 0.98498 0.94876 0.95453 1.69898 1.35056 1.37743 1.09310 0.86481 0.85038 0.77617 0.78150 1.20596 1.21113 1.19898 1.46516 1.14857 1.56182 1.18375 1.20378 0.82580 0.79207 0.89255 1.90624 1.51169 1.60050 1.40785 1.21780 0.97817 1.00811 0.97086 1.19166 0.93012 0.95859 0.93728 0.89829 1.21957 0.98083 0.97507 1.02781 1.20382 1.08811 0.92134 0.94469 1.21568 1.03554 0.93445 0.89263 1.41701 1.61559 1.07525 1.09247 0.75037 1.18262 1.03301 0.88075 0.91654 1.19978 1.05903 0.90190 0.99529 1.20775 1.00162 0.98286 0.92809 1.20623 1.03675 0.96781 0.95985 1.20374 0.97408 0.91740 0.98873 1.19151 1.05217 0.93923 0.92293 0.94078 0.96054 0.93163 0.95206 0.88452 0.92625 0.78147 0.89946 0.89663 0.89807 0.93360 0.93824 0.81474 0.86594 0.86038 0.86153 0.85872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.00 8.51 37.15 0.32 -2.69 16 2 C -0.13 -3.06 5.45 -26.73 -0.15 -3.21 16 3 C 0.27 6.73 2.24 -69.08 -0.15 6.57 16 4 H 0.05 1.40 7.58 -51.93 -0.39 1.00 16 5 C -0.53 -14.04 8.73 -34.44 -0.30 -14.34 16 6 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.75 11.29 55.43 0.63 -24.13 16 9 Si 0.90 20.64 29.54 -169.99 -5.02 15.62 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 12 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 13 N -0.71 -14.40 5.02 -54.93 -0.28 -14.68 16 14 C 0.50 9.42 6.11 -10.99 -0.07 9.35 16 15 O -0.55 -11.99 11.11 5.56 0.06 -11.93 16 16 C -0.13 -1.88 5.02 -27.88 -0.14 -2.02 16 17 C 0.00 0.03 2.43 -91.78 -0.22 -0.20 16 18 H 0.08 1.30 7.95 -51.93 -0.41 0.89 16 19 C -0.15 -2.02 8.81 37.16 0.33 -1.69 16 20 C -0.15 -1.88 5.05 -102.71 -0.52 -2.39 16 21 C 0.05 0.47 11.26 -16.73 -0.19 0.28 16 22 N -0.60 -5.43 6.07 -10.65 -0.06 -5.49 16 23 H 0.41 2.40 8.96 -40.82 -0.37 2.03 16 24 C 0.09 1.06 7.28 -83.99 -0.61 0.45 16 25 C -0.14 -1.32 10.08 -39.43 -0.40 -1.72 16 26 C -0.10 -0.96 10.01 -39.54 -0.40 -1.35 16 27 C -0.15 -1.58 9.97 -39.94 -0.40 -1.98 16 28 C -0.07 -0.80 10.05 -39.64 -0.40 -1.20 16 29 C -0.10 -1.31 6.35 -105.14 -0.67 -1.97 16 30 H 0.04 0.86 5.65 -51.93 -0.29 0.57 16 31 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.05 1.18 7.85 -51.93 -0.41 0.77 16 33 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.10 2.62 5.95 -51.93 -0.31 2.31 16 35 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 36 H 0.39 6.86 8.54 -40.82 -0.35 6.51 16 37 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 38 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.08 1.40 5.95 -51.93 -0.31 1.09 16 40 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.04 0.52 8.01 -51.93 -0.42 0.11 16 42 H 0.17 1.26 8.06 -52.49 -0.42 0.84 16 43 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 44 H 0.12 0.84 8.06 -52.48 -0.42 0.42 16 45 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 46 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 LS Contribution 370.48 15.07 5.58 5.58 Total: -1.00 -31.09 370.48 -10.17 -41.26 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: -7.02 Total: 10.19 kcal Atomic # 6 Polarization: -12.37 SS G_CDS: -4.06 Total: -16.43 kcal Atomic # 7 Polarization: -44.59 SS G_CDS: 0.29 Total: -44.30 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: 0.06 Total: -11.93 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.09 -10.17 -41.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280339325.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.084 kcal (2) G-P(sol) polarization free energy of solvation -31.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds