Wall clock time and date at job start Tue Mar 31 2020 10:27:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.47111 * 2 1 4 4 H 1.08998 * 109.46918 * 54.99668 * 3 2 1 5 5 C 1.50698 * 109.47340 * 174.99925 * 3 2 1 6 6 H 1.08005 * 120.00133 * 119.99301 * 5 3 2 7 7 C 1.37879 * 120.00159 * 300.00294 * 5 3 2 8 8 N 1.31513 * 119.99538 * 359.97438 * 7 5 3 9 9 Si 1.86793 * 120.00341 * 179.97438 * 7 5 3 10 10 H 1.48503 * 109.47134 * 89.99393 * 9 7 5 11 11 H 1.48498 * 109.47276 * 209.99834 * 9 7 5 12 12 H 1.48503 * 109.46975 * 329.99749 * 9 7 5 13 13 N 1.46505 * 109.46817 * 295.00153 * 3 2 1 14 14 C 1.34769 * 120.00075 * 84.99902 * 13 3 2 15 15 O 1.21277 * 120.00563 * 0.02562 * 14 13 3 16 16 C 1.50703 * 119.99858 * 179.97438 * 14 13 3 17 17 C 1.53004 * 109.47349 * 180.02562 * 16 14 13 18 18 H 1.09004 * 109.46529 * 54.99822 * 17 16 14 19 19 C 1.52995 * 109.46956 * 295.00303 * 17 16 14 20 20 C 1.50694 * 109.47162 * 175.00117 * 17 16 14 21 21 C 1.34234 * 126.50481 * 60.33906 * 20 17 16 22 22 N 1.36830 * 109.93384 * 180.14765 * 21 20 17 23 23 H 0.97001 * 125.06783 * 179.82141 * 22 21 20 24 24 C 1.37689 * 109.86882 * 359.54926 * 22 21 20 25 25 C 1.39134 * 133.50571 * 180.26034 * 24 22 21 26 26 C 1.37745 * 119.77479 * 180.02562 * 25 24 22 27 27 C 1.38830 * 120.67221 * 0.02562 * 26 25 24 28 28 C 1.36628 * 120.52453 * 359.97438 * 27 26 25 29 29 C 1.39628 * 119.76381 * 359.97438 * 28 27 26 30 30 H 1.09005 * 109.47275 * 60.00018 * 1 2 3 31 31 H 1.08993 * 109.47362 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47234 * 300.00155 * 1 2 3 33 33 H 1.08996 * 109.47185 * 240.00336 * 2 1 3 34 34 H 1.08999 * 109.47254 * 119.99541 * 2 1 3 35 35 H 0.97006 * 120.00046 * 180.02562 * 8 7 5 36 36 H 0.97000 * 119.99204 * 264.99901 * 13 3 2 37 37 H 1.08997 * 109.46996 * 59.99845 * 16 14 13 38 38 H 1.08999 * 109.47127 * 299.99992 * 16 14 13 39 39 H 1.09001 * 109.47469 * 59.99432 * 19 17 16 40 40 H 1.08997 * 109.47193 * 179.97438 * 19 17 16 41 41 H 1.09001 * 109.47477 * 299.99823 * 19 17 16 42 42 H 1.07999 * 125.03333 * 359.97438 * 21 20 17 43 43 H 1.08000 * 120.10688 * 359.97438 * 25 24 22 44 44 H 1.08006 * 119.66035 * 180.02562 * 26 25 24 45 45 H 1.07995 * 119.73837 * 179.97438 * 27 26 25 46 46 H 1.07999 * 120.11413 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 0.8418 5 6 3.5418 1.4444 0.1238 6 1 4.1472 1.8889 -0.6524 7 6 4.1433 0.8785 1.2280 8 7 3.4061 0.3375 2.1732 9 14 6.0049 0.8801 1.3812 10 1 6.4427 2.1131 2.0836 11 1 6.4390 -0.3109 2.1546 12 1 6.6130 0.8396 0.0270 13 7 1.6523 2.0975 -1.2519 14 6 0.4350 2.6643 -1.3670 15 8 -0.3394 2.6327 -0.4342 16 6 0.0366 3.3385 -2.6545 17 6 -1.3823 3.8953 -2.5209 18 1 -1.4346 4.5517 -1.6522 19 6 -2.3694 2.7394 -2.3469 20 6 -1.7350 4.6746 -3.7615 21 6 -1.7838 4.1996 -5.0160 22 7 -2.1375 5.1998 -5.8802 23 1 -2.2354 5.0985 -6.8399 24 6 -2.3397 6.3702 -5.1837 25 6 -2.7087 7.6577 -5.5607 26 6 -2.8307 8.6419 -4.6047 27 6 -2.5887 8.3632 -3.2664 28 6 -2.2253 7.1059 -2.8741 29 6 -2.0966 6.0927 -3.8262 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 3.8292 -0.0603 2.9503 36 1 2.2719 2.1231 -1.9978 37 1 0.0680 2.6145 -3.4686 38 1 0.7279 4.1540 -2.8668 39 1 -2.1142 2.1756 -1.4496 40 1 -3.3801 3.1360 -2.2512 41 1 -2.3170 2.0829 -3.2155 42 1 -1.5721 3.1798 -5.3015 43 1 -2.8979 7.8847 -6.5995 44 1 -3.1176 9.6406 -4.8994 45 1 -2.6884 9.1464 -2.5296 46 1 -2.0382 6.8965 -1.8313 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000280339325.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:27:42 Heat of formation + Delta-G solvation = -17.953361 kcal Electronic energy + Delta-G solvation = -25746.648124 eV Core-core repulsion = 22213.980028 eV Total energy + Delta-G solvation = -3532.668096 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.18098 -40.67284 -37.87767 -37.12985 -35.77710 -34.23326 -32.83751 -32.13425 -30.23820 -29.58447 -28.91934 -28.06247 -25.05971 -23.83368 -23.69807 -22.62300 -21.88851 -20.95749 -19.64292 -18.89358 -18.60576 -17.40813 -17.22874 -16.96085 -16.40498 -16.25638 -15.94867 -15.37998 -15.28118 -14.90194 -14.67753 -14.56532 -14.46653 -14.13282 -13.88480 -13.52514 -13.40018 -13.17703 -13.08859 -12.85271 -12.68738 -12.53978 -12.53539 -12.27258 -12.14259 -12.02753 -11.97896 -11.69604 -11.52639 -11.50475 -11.00886 -10.55711 -10.47267 -10.30218 -9.50297 -9.08999 -8.48971 -8.13882 -6.30885 0.26119 0.74916 1.44887 1.45273 1.55753 1.79671 2.02457 2.32730 2.39353 2.80287 3.03613 3.15397 3.82575 3.89069 3.99445 4.23289 4.26412 4.30778 4.39512 4.50432 4.54158 4.59537 4.63133 4.65348 4.75087 4.79772 4.83511 4.95625 4.97107 5.04847 5.11418 5.18085 5.25781 5.32834 5.45206 5.48342 5.56343 5.60722 5.63420 5.73291 5.75302 5.84668 5.85784 5.92523 6.00688 6.22755 6.29937 6.78905 6.80687 7.13143 7.37185 7.74222 8.91207 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.021004 B = 0.002733 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.743818 B =10243.887930 C =10717.409930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.120 4.120 3 C 0.279 3.721 4 H -0.005 1.005 5 C -0.547 4.547 6 H 0.070 0.930 7 C 0.014 3.986 8 N -0.916 5.916 9 Si 0.968 3.032 10 H -0.280 1.280 11 H -0.284 1.284 12 H -0.260 1.260 13 N -0.711 5.711 14 C 0.496 3.504 15 O -0.582 6.582 16 C -0.119 4.119 17 C 0.012 3.988 18 H 0.051 0.949 19 C -0.139 4.139 20 C -0.184 4.184 21 C 0.069 3.931 22 N -0.584 5.584 23 H 0.431 0.569 24 C 0.080 3.920 25 C -0.133 4.133 26 C -0.107 4.107 27 C -0.154 4.154 28 C -0.098 4.098 29 C -0.130 4.130 30 H 0.051 0.949 31 H 0.042 0.958 32 H 0.022 0.978 33 H 0.040 0.960 34 H 0.067 0.933 35 H 0.264 0.736 36 H 0.402 0.598 37 H 0.117 0.883 38 H 0.097 0.903 39 H 0.050 0.950 40 H 0.047 0.953 41 H 0.068 0.932 42 H 0.200 0.800 43 H 0.145 0.855 44 H 0.150 0.850 45 H 0.135 0.865 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.087 10.886 -20.450 25.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.159 4.159 3 C 0.175 3.825 4 H 0.013 0.987 5 C -0.585 4.585 6 H 0.088 0.912 7 C -0.186 4.186 8 N -0.554 5.554 9 Si 0.793 3.207 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.184 1.184 13 N -0.360 5.360 14 C 0.284 3.716 15 O -0.463 6.463 16 C -0.159 4.159 17 C -0.008 4.008 18 H 0.069 0.931 19 C -0.197 4.197 20 C -0.191 4.191 21 C -0.058 4.058 22 N -0.188 5.188 23 H 0.271 0.729 24 C -0.028 4.028 25 C -0.153 4.153 26 C -0.126 4.126 27 C -0.173 4.173 28 C -0.116 4.116 29 C -0.134 4.134 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.042 0.958 33 H 0.059 0.941 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.236 0.764 37 H 0.135 0.865 38 H 0.115 0.885 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.087 0.913 42 H 0.217 0.783 43 H 0.162 0.838 44 H 0.168 0.832 45 H 0.153 0.847 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -11.610 10.710 -19.761 25.298 hybrid contribution 1.165 -0.163 0.301 1.214 sum -10.446 10.547 -19.460 24.475 Atomic orbital electron populations 1.21675 0.96797 0.98979 1.00487 1.21760 0.93913 0.99172 1.01044 1.18297 0.93316 0.89173 0.81720 0.98731 1.21620 0.91751 1.38604 1.06550 0.91207 1.25765 1.03182 0.94500 0.95127 1.70057 1.36978 1.38545 1.09841 0.85410 0.79366 0.77352 0.78596 1.20578 1.20985 1.18410 1.46306 1.15916 1.56430 1.17319 1.21264 0.81463 0.78332 0.90591 1.90626 1.52055 1.61002 1.42595 1.21745 0.98015 1.01342 0.94776 1.18935 0.92828 0.95347 0.93698 0.93089 1.21867 0.98046 0.97561 1.02197 1.20190 1.11980 0.92233 0.94730 1.21963 1.00886 0.94555 0.88376 1.41700 1.60381 1.06594 1.10090 0.72912 1.18478 1.03824 0.89266 0.91220 1.20367 1.04452 0.89487 1.01028 1.21147 0.99576 0.99710 0.92180 1.20897 1.02757 0.96393 0.97239 1.20477 0.99588 0.92987 0.98571 1.19441 1.06089 0.94406 0.93500 0.93049 0.93871 0.95830 0.94116 0.91417 0.92707 0.76394 0.86491 0.88506 0.93096 0.93432 0.91324 0.78340 0.83752 0.83216 0.84742 0.87217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.46 8.51 71.98 0.61 -4.84 16 2 C -0.12 -5.90 5.45 30.59 0.17 -5.74 16 3 C 0.28 14.29 2.24 44.25 0.10 14.39 16 4 H -0.01 -0.32 7.58 -2.39 -0.02 -0.34 16 5 C -0.55 -29.10 8.73 25.60 0.22 -28.87 16 6 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 7 C 0.01 0.77 5.29 84.66 0.45 1.21 16 8 N -0.92 -52.95 11.29 21.45 0.24 -52.70 16 9 Si 0.97 42.41 29.54 68.60 2.03 44.43 16 10 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 11 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 12 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 13 N -0.71 -28.79 5.02 -446.09 -2.24 -31.03 16 14 C 0.50 18.83 6.11 87.66 0.54 19.36 16 15 O -0.58 -26.70 11.11 -3.02 -0.03 -26.73 16 16 C -0.12 -3.16 5.02 29.85 0.15 -3.01 16 17 C 0.01 0.32 2.43 -11.54 -0.03 0.29 16 18 H 0.05 1.71 7.95 -2.38 -0.02 1.69 16 19 C -0.14 -3.81 8.81 71.98 0.63 -3.18 16 20 C -0.18 -4.36 5.05 -18.63 -0.09 -4.45 16 21 C 0.07 1.16 11.26 83.00 0.93 2.09 16 22 N -0.58 -8.67 6.07 -187.61 -1.14 -9.81 16 23 H 0.43 3.26 8.96 -92.71 -0.83 2.43 16 24 C 0.08 1.63 7.28 39.03 0.28 1.91 16 25 C -0.13 -2.23 10.08 22.37 0.23 -2.01 16 26 C -0.11 -1.80 10.01 22.29 0.22 -1.58 16 27 C -0.15 -3.14 9.97 22.03 0.22 -2.93 16 28 C -0.10 -2.48 10.05 22.23 0.22 -2.26 16 29 C -0.13 -3.30 6.35 -20.20 -0.13 -3.43 16 30 H 0.05 2.16 5.65 -2.38 -0.01 2.15 16 31 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.02 1.14 7.85 -2.39 -0.02 1.12 16 33 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.07 3.76 5.95 -2.39 -0.01 3.75 16 35 H 0.26 14.47 8.31 -92.70 -0.77 13.70 16 36 H 0.40 13.76 8.54 -92.71 -0.79 12.97 16 37 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 38 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 39 H 0.05 1.74 5.95 -2.39 -0.01 1.72 16 40 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.07 1.49 8.01 -2.39 -0.02 1.47 16 42 H 0.20 1.98 8.06 -2.91 -0.02 1.96 16 43 H 0.14 1.53 8.06 -2.91 -0.02 1.51 16 44 H 0.15 1.60 8.06 -2.91 -0.02 1.57 16 45 H 0.13 2.20 8.06 -2.91 -0.02 2.18 16 46 H 0.11 2.89 8.06 -2.91 -0.02 2.86 16 Total: -1.00 -71.26 370.48 2.96 -68.30 By element: Atomic # 1 Polarization: 31.21 SS G_CDS: -0.63 Total: 30.58 kcal Atomic # 6 Polarization: -27.77 SS G_CDS: 4.73 Total: -23.04 kcal Atomic # 7 Polarization: -90.41 SS G_CDS: -3.14 Total: -93.54 kcal Atomic # 8 Polarization: -26.70 SS G_CDS: -0.03 Total: -26.73 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.43 kcal Total: -71.26 2.96 -68.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000280339325.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.342 kcal (2) G-P(sol) polarization free energy of solvation -71.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.295 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds