Wall clock time and date at job start Tue Mar 31 2020 10:46:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17396 * 1
3 3 C 1.47200 * 179.97438 * 2 1
4 4 N 1.46508 * 109.47167 * 64.77542 * 3 2 1
5 5 C 1.36906 * 119.99748 * 288.73424 * 4 3 2
6 6 H 1.08002 * 119.99320 * 165.65738 * 5 4 3
7 7 C 1.39009 * 120.00651 * 345.65605 * 5 4 3
8 8 N 1.31394 * 119.99661 * 36.86347 * 7 5 4
9 9 Si 1.86793 * 120.00394 * 216.86700 * 7 5 4
10 10 H 1.48498 * 109.47140 * 59.99711 * 9 7 5
11 11 H 1.48504 * 109.47482 * 180.02562 * 9 7 5
12 12 H 1.48506 * 109.47116 * 299.99656 * 9 7 5
13 13 C 1.34769 * 119.99687 * 108.73208 * 4 3 2
14 14 O 1.21636 * 119.99876 * 186.49319 * 13 4 3
15 15 C 1.47416 * 120.00158 * 6.49103 * 13 4 3
16 16 C 1.39864 * 120.07384 * 140.87166 * 15 13 4
17 17 C 1.37589 * 119.92547 * 180.02562 * 16 15 13
18 18 C 1.39229 * 120.07268 * 0.02562 * 17 16 15
19 19 N 1.39060 * 119.92601 * 179.97438 * 18 17 16
20 20 C 1.46502 * 119.99710 * 359.97438 * 19 18 17
21 21 C 1.52997 * 109.47167 * 270.00204 * 20 19 18
22 22 C 1.46497 * 120.00293 * 179.97438 * 19 18 17
23 23 C 1.53000 * 109.47466 * 270.00174 * 22 19 18
24 24 C 1.52998 * 109.47186 * 180.02562 * 23 22 19
25 25 C 1.39239 * 120.15219 * 0.24808 * 18 17 16
26 26 C 1.37589 * 120.07145 * 359.45219 * 25 18 17
27 27 H 4.40640 * 5.51521 * 180.02562 * 4 1 2
28 28 H 1.09003 * 109.47120 * 304.78346 * 3 2 1
29 29 H 1.08996 * 109.47017 * 184.77787 * 3 2 1
30 30 H 0.97003 * 120.00052 * 180.02562 * 8 7 5
31 31 H 1.08009 * 120.03491 * 0.02562 * 16 15 13
32 32 H 1.08000 * 119.96556 * 179.97438 * 17 16 15
33 33 H 1.09006 * 109.47089 * 149.99630 * 20 19 18
34 34 H 1.09007 * 109.47040 * 30.00193 * 20 19 18
35 35 H 1.09001 * 109.47161 * 180.02562 * 21 20 19
36 36 H 1.08999 * 109.46796 * 299.99955 * 21 20 19
37 37 H 1.08992 * 109.47129 * 59.99987 * 21 20 19
38 38 H 1.09007 * 109.46771 * 30.00664 * 22 19 18
39 39 H 1.08999 * 109.47103 * 150.00055 * 22 19 18
40 40 H 1.08995 * 109.46875 * 300.00153 * 23 22 19
41 41 H 1.08999 * 109.47057 * 59.99853 * 23 22 19
42 42 H 1.09004 * 109.46722 * 299.99869 * 24 23 22
43 43 H 1.08999 * 109.47284 * 59.99941 * 24 23 22
44 44 H 1.09001 * 109.47144 * 180.02562 * 24 23 22
45 45 H 1.07994 * 119.96032 * 179.72494 * 25 18 17
46 46 H 1.07997 * 120.03583 * 180.24978 * 26 25 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6460 0.0007 0.0000
4 7 3.1346 -0.5878 -1.2496
5 6 3.0043 -1.9327 -1.4697
6 1 3.1448 -2.3334 -2.4627
7 6 2.6913 -2.7826 -0.4152
8 7 1.8600 -2.3874 0.5225
9 14 3.4524 -4.4864 -0.3310
10 1 4.9311 -4.3654 -0.2674
11 1 2.9602 -5.1893 0.8810
12 1 3.0705 -5.2594 -1.5402
13 6 3.7122 0.1949 -2.1823
14 8 4.0106 -0.2696 -3.2661
15 6 3.9824 1.6142 -1.8890
16 6 5.1657 2.2096 -2.3377
17 6 5.4150 3.5343 -2.0618
18 6 4.4911 4.2817 -1.3364
19 7 4.7465 5.6202 -1.0588
20 6 5.9868 6.2421 -1.5291
21 6 7.0743 6.0790 -0.4655
22 6 3.7752 6.4084 -0.2962
23 6 2.7813 7.0624 -1.2580
24 6 1.7674 7.8861 -0.4615
25 6 3.3147 3.6906 -0.8833
26 6 3.0563 2.3680 -1.1610
27 1 -1.0499 0.0001 -0.0003
28 1 3.0096 -0.5854 0.8441
29 1 3.0088 1.0249 0.0856
30 1 1.6418 -2.9803 1.2586
31 1 5.8830 1.6302 -2.9002
32 1 6.3288 3.9947 -2.4076
33 1 5.8144 7.3027 -1.7130
34 1 6.3070 5.7606 -2.4531
35 1 7.9970 6.5421 -0.8152
36 1 6.7540 6.5605 0.4584
37 1 7.2466 5.0186 -0.2817
38 1 3.2387 5.7559 0.3927
39 1 4.2973 7.1813 0.2678
40 1 3.3179 7.7148 -1.9468
41 1 2.2592 6.2895 -1.8220
42 1 1.2307 7.2339 0.2276
43 1 2.2898 8.6590 0.1021
44 1 1.0590 8.3516 -1.1467
45 1 2.6023 4.2721 -0.3171
46 1 2.1418 1.9112 -0.8127
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000281021581.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:46:33
Heat of formation + Delta-G solvation = 83.791758 kcal
Electronic energy + Delta-G solvation = -26140.441174 eV
Core-core repulsion = 22612.185078 eV
Total energy + Delta-G solvation = -3528.256096 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 314.174 amu
Computer time = 0.86 seconds
Orbital eigenvalues (eV)
-39.87119 -38.51880 -36.35387 -35.16152 -33.95517 -32.19979 -31.37185 -31.23308
-30.37255 -28.87856 -26.56341 -25.95239 -24.77359 -23.41294 -22.31503 -21.59950
-20.51295 -19.27754 -17.94496 -17.43055 -16.48600 -16.31931 -15.92443 -15.07776
-14.86738 -14.58172 -14.39467 -14.21058 -14.10147 -13.67613 -13.58077 -13.17671
-13.10987 -12.95521 -12.57288 -12.35267 -12.14480 -12.02369 -11.97058 -11.79175
-11.66546 -11.49468 -11.36868 -11.11968 -10.88827 -10.86005 -10.54324 -10.29782
-10.23861 -9.57043 -9.33937 -9.09256 -8.65720 -8.44622 -8.31844 -7.99663
-7.04201 -6.44827 -3.69936 1.72482 1.83842 3.09431 3.20592 3.28346
3.34111 3.73109 3.94824 4.08925 4.22658 4.46401 4.66613 4.74493
4.80646 4.88409 5.05849 5.10081 5.15513 5.16332 5.20816 5.30648
5.34051 5.43007 5.56785 5.58048 5.63604 5.67699 5.74814 5.80714
5.85662 5.87813 5.90778 6.03947 6.06659 6.13705 6.32480 6.44486
6.54654 6.76271 6.86779 7.04785 7.11061 7.13539 7.37428 7.54287
7.68006 8.12567 8.47127 8.91842 9.17088 9.39993 9.99964 10.54348
Molecular weight = 314.17amu
Principal moments of inertia in cm(-1)
A = 0.017859 B = 0.003537 C = 0.003179
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1567.490993 B = 7913.594243 C = 8805.359553
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.262 4.262
2 C -0.102 4.102
3 C 0.202 3.798
4 N -0.429 5.429
5 C -0.329 4.329
6 H 0.109 0.891
7 C 0.049 3.951
8 N -0.833 5.833
9 Si 0.903 3.097
10 H -0.272 1.272
11 H -0.286 1.286
12 H -0.272 1.272
13 C 0.483 3.517
14 O -0.588 6.588
15 C -0.151 4.151
16 C -0.031 4.031
17 C -0.205 4.205
18 C 0.217 3.783
19 N -0.628 5.628
20 C 0.120 3.880
21 C -0.173 4.173
22 C 0.124 3.876
23 C -0.145 4.145
24 C -0.150 4.150
25 C -0.203 4.203
26 C -0.063 4.063
27 H 0.198 0.802
28 H 0.097 0.903
29 H 0.091 0.909
30 H 0.270 0.730
31 H 0.125 0.875
32 H 0.120 0.880
33 H 0.069 0.931
34 H 0.076 0.924
35 H 0.060 0.940
36 H 0.053 0.947
37 H 0.061 0.939
38 H 0.077 0.923
39 H 0.069 0.931
40 H 0.060 0.940
41 H 0.068 0.932
42 H 0.056 0.944
43 H 0.052 0.948
44 H 0.055 0.945
45 H 0.120 0.880
46 H 0.137 0.863
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.969 19.734 3.179 20.379
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.280 4.280
2 C -0.104 4.104
3 C 0.079 3.921
4 N -0.146 5.146
5 C -0.456 4.456
6 H 0.126 0.874
7 C -0.159 4.159
8 N -0.468 5.468
9 Si 0.729 3.271
10 H -0.198 1.198
11 H -0.212 1.212
12 H -0.197 1.197
13 C 0.274 3.726
14 O -0.474 6.474
15 C -0.156 4.156
16 C -0.050 4.050
17 C -0.227 4.227
18 C 0.116 3.884
19 N -0.339 5.339
20 C -0.004 4.004
21 C -0.231 4.231
22 C 0.000 4.000
23 C -0.184 4.184
24 C -0.208 4.208
25 C -0.225 4.225
26 C -0.083 4.083
27 H 0.215 0.785
28 H 0.115 0.885
29 H 0.108 0.892
30 H 0.081 0.919
31 H 0.143 0.857
32 H 0.138 0.862
33 H 0.087 0.913
34 H 0.094 0.906
35 H 0.079 0.921
36 H 0.073 0.927
37 H 0.080 0.920
38 H 0.095 0.905
39 H 0.087 0.913
40 H 0.079 0.921
41 H 0.087 0.913
42 H 0.075 0.925
43 H 0.071 0.929
44 H 0.074 0.926
45 H 0.138 0.862
46 H 0.155 0.845
Dipole moment (debyes) X Y Z Total
from point charges 4.061 19.559 2.886 20.184
hybrid contribution -0.119 -0.972 0.298 1.024
sum 3.942 18.587 3.184 19.265
Atomic orbital electron populations
1.24197 0.95283 1.06140 1.02429 1.22827 0.94003 0.95356 0.98188
1.19136 0.84681 0.98374 0.89870 1.43661 1.48819 1.07524 1.14602
1.19489 1.49011 0.80100 0.96963 0.87371 1.25247 0.94837 1.00100
0.95669 1.70304 1.24946 1.38254 1.13311 0.86367 0.80659 0.82382
0.77703 1.19780 1.21171 1.19744 1.17712 0.84536 0.85113 0.85250
1.90604 1.58517 1.75038 1.23272 1.19987 0.96721 0.95376 1.03526
1.20884 0.95427 0.93430 0.95295 1.20514 1.00761 0.94710 1.06689
1.17842 0.93591 0.83479 0.93454 1.46388 1.20079 1.07540 1.59853
1.21343 0.84102 0.97696 0.97227 1.22234 0.98482 1.02788 0.99624
1.21443 0.90348 0.94729 0.93446 1.21992 0.97532 0.99807 0.99057
1.21707 0.98937 0.99861 1.00293 1.20538 0.98125 0.95725 1.08131
1.21528 0.99115 0.92990 0.94618 0.78481 0.88482 0.89214 0.91943
0.85667 0.86215 0.91308 0.90594 0.92064 0.92744 0.91973 0.90505
0.91285 0.92122 0.91310 0.92452 0.92858 0.92598 0.86175 0.84508
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 18.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.26 -5.58 19.24 29.55 0.57 -5.01 16
2 C -0.10 -2.35 9.63 -37.12 -0.36 -2.71 16
3 C 0.20 4.63 4.80 -6.82 -0.03 4.60 16
4 N -0.43 -11.25 2.68 -119.16 -0.32 -11.56 16
5 C -0.33 -9.32 9.09 -15.00 -0.14 -9.46 16
6 H 0.11 3.26 7.43 -52.49 -0.39 2.87 16
7 C 0.05 1.28 5.01 -17.45 -0.09 1.19 16
8 N -0.83 -21.64 9.03 55.50 0.50 -21.14 16
9 Si 0.90 20.59 29.68 -169.99 -5.04 15.54 16
10 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16
11 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16
12 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16
13 C 0.48 12.43 7.29 -12.53 -0.09 12.34 16
14 O -0.59 -17.08 16.53 5.25 0.09 -17.00 16
15 C -0.15 -3.14 5.40 -104.95 -0.57 -3.71 16
16 C -0.03 -0.55 9.62 -39.21 -0.38 -0.93 16
17 C -0.20 -3.04 9.18 -39.45 -0.36 -3.40 16
18 C 0.22 3.05 6.55 -83.84 -0.55 2.50 16
19 N -0.63 -6.82 2.59 -171.74 -0.44 -7.26 16
20 C 0.12 1.05 5.86 -4.04 -0.02 1.02 16
21 C -0.17 -1.41 10.24 37.16 0.38 -1.03 16
22 C 0.12 1.11 5.15 -4.04 -0.02 1.09 16
23 C -0.14 -1.25 6.26 -26.73 -0.17 -1.41 16
24 C -0.15 -1.07 9.91 37.16 0.37 -0.70 16
25 C -0.20 -3.06 9.18 -39.45 -0.36 -3.43 16
26 C -0.06 -1.15 7.33 -39.21 -0.29 -1.44 16
27 H 0.20 3.44 7.80 -54.10 -0.42 3.02 16
28 H 0.10 2.33 6.59 -51.93 -0.34 1.99 16
29 H 0.09 1.81 3.79 -51.93 -0.20 1.61 16
30 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16
31 H 0.13 2.27 8.05 -52.48 -0.42 1.84 16
32 H 0.12 1.48 6.11 -52.49 -0.32 1.16 16
33 H 0.07 0.49 8.07 -51.93 -0.42 0.08 16
34 H 0.08 0.68 6.17 -51.92 -0.32 0.36 16
35 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16
36 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16
37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16
38 H 0.08 0.72 6.16 -51.93 -0.32 0.40 16
39 H 0.07 0.52 8.07 -51.93 -0.42 0.10 16
40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16
41 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16
42 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16
43 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16
44 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16
45 H 0.12 1.55 6.10 -52.49 -0.32 1.23 16
46 H 0.14 2.59 4.65 -52.49 -0.24 2.35 16
LS Contribution 374.01 15.07 5.64 5.64
Total: -1.00 -31.79 374.01 -8.34 -40.13
By element:
Atomic # 1 Polarization: 12.78 SS G_CDS: -6.65 Total: 6.13 kcal
Atomic # 6 Polarization: -8.37 SS G_CDS: -2.10 Total: -10.48 kcal
Atomic # 7 Polarization: -39.70 SS G_CDS: -0.26 Total: -39.96 kcal
Atomic # 8 Polarization: -17.08 SS G_CDS: 0.09 Total: -17.00 kcal
Atomic # 14 Polarization: 20.59 SS G_CDS: -5.04 Total: 15.54 kcal
Total LS contribution 5.64 Total: 5.64 kcal
Total: -31.79 -8.34 -40.13 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000281021581.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 123.924 kcal
(2) G-P(sol) polarization free energy of solvation -31.789 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.135 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.343 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.132 kcal
(6) G-S(sol) free energy of system = (1) + (5) 83.792 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.86 seconds