Wall clock time and date at job start Tue Mar 31 2020 10:46:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46508 * 109.47167 * 64.77542 * 3 2 1 5 5 C 1.36906 * 119.99748 * 288.73424 * 4 3 2 6 6 H 1.08002 * 119.99320 * 165.65738 * 5 4 3 7 7 C 1.39009 * 120.00651 * 345.65605 * 5 4 3 8 8 N 1.31394 * 119.99661 * 36.86347 * 7 5 4 9 9 Si 1.86793 * 120.00394 * 216.86700 * 7 5 4 10 10 H 1.48498 * 109.47140 * 59.99711 * 9 7 5 11 11 H 1.48504 * 109.47482 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47116 * 299.99656 * 9 7 5 13 13 C 1.34769 * 119.99687 * 108.73208 * 4 3 2 14 14 O 1.21636 * 119.99876 * 186.49319 * 13 4 3 15 15 C 1.47416 * 120.00158 * 6.49103 * 13 4 3 16 16 C 1.39864 * 120.07384 * 140.87166 * 15 13 4 17 17 C 1.37589 * 119.92547 * 180.02562 * 16 15 13 18 18 C 1.39229 * 120.07268 * 0.02562 * 17 16 15 19 19 N 1.39060 * 119.92601 * 179.97438 * 18 17 16 20 20 C 1.46502 * 119.99710 * 359.97438 * 19 18 17 21 21 C 1.52997 * 109.47167 * 270.00204 * 20 19 18 22 22 C 1.46497 * 120.00293 * 179.97438 * 19 18 17 23 23 C 1.53000 * 109.47466 * 270.00174 * 22 19 18 24 24 C 1.52998 * 109.47186 * 180.02562 * 23 22 19 25 25 C 1.39239 * 120.15219 * 0.24808 * 18 17 16 26 26 C 1.37589 * 120.07145 * 359.45219 * 25 18 17 27 27 H 4.40640 * 5.51521 * 180.02562 * 4 1 2 28 28 H 1.09003 * 109.47120 * 304.78346 * 3 2 1 29 29 H 1.08996 * 109.47017 * 184.77787 * 3 2 1 30 30 H 0.97003 * 120.00052 * 180.02562 * 8 7 5 31 31 H 1.08009 * 120.03491 * 0.02562 * 16 15 13 32 32 H 1.08000 * 119.96556 * 179.97438 * 17 16 15 33 33 H 1.09006 * 109.47089 * 149.99630 * 20 19 18 34 34 H 1.09007 * 109.47040 * 30.00193 * 20 19 18 35 35 H 1.09001 * 109.47161 * 180.02562 * 21 20 19 36 36 H 1.08999 * 109.46796 * 299.99955 * 21 20 19 37 37 H 1.08992 * 109.47129 * 59.99987 * 21 20 19 38 38 H 1.09007 * 109.46771 * 30.00664 * 22 19 18 39 39 H 1.08999 * 109.47103 * 150.00055 * 22 19 18 40 40 H 1.08995 * 109.46875 * 300.00153 * 23 22 19 41 41 H 1.08999 * 109.47057 * 59.99853 * 23 22 19 42 42 H 1.09004 * 109.46722 * 299.99869 * 24 23 22 43 43 H 1.08999 * 109.47284 * 59.99941 * 24 23 22 44 44 H 1.09001 * 109.47144 * 180.02562 * 24 23 22 45 45 H 1.07994 * 119.96032 * 179.72494 * 25 18 17 46 46 H 1.07997 * 120.03583 * 180.24978 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1346 -0.5878 -1.2496 5 6 3.0043 -1.9327 -1.4697 6 1 3.1448 -2.3334 -2.4627 7 6 2.6913 -2.7826 -0.4152 8 7 1.8600 -2.3874 0.5225 9 14 3.4524 -4.4864 -0.3310 10 1 4.9311 -4.3654 -0.2674 11 1 2.9602 -5.1893 0.8810 12 1 3.0705 -5.2594 -1.5402 13 6 3.7122 0.1949 -2.1823 14 8 4.0106 -0.2696 -3.2661 15 6 3.9824 1.6142 -1.8890 16 6 5.1657 2.2096 -2.3377 17 6 5.4150 3.5343 -2.0618 18 6 4.4911 4.2817 -1.3364 19 7 4.7465 5.6202 -1.0588 20 6 5.9868 6.2421 -1.5291 21 6 7.0743 6.0790 -0.4655 22 6 3.7752 6.4084 -0.2962 23 6 2.7813 7.0624 -1.2580 24 6 1.7674 7.8861 -0.4615 25 6 3.3147 3.6906 -0.8833 26 6 3.0563 2.3680 -1.1610 27 1 -1.0499 0.0001 -0.0003 28 1 3.0096 -0.5854 0.8441 29 1 3.0088 1.0249 0.0856 30 1 1.6418 -2.9803 1.2586 31 1 5.8830 1.6302 -2.9002 32 1 6.3288 3.9947 -2.4076 33 1 5.8144 7.3027 -1.7130 34 1 6.3070 5.7606 -2.4531 35 1 7.9970 6.5421 -0.8152 36 1 6.7540 6.5605 0.4584 37 1 7.2466 5.0186 -0.2817 38 1 3.2387 5.7559 0.3927 39 1 4.2973 7.1813 0.2678 40 1 3.3179 7.7148 -1.9468 41 1 2.2592 6.2895 -1.8220 42 1 1.2307 7.2339 0.2276 43 1 2.2898 8.6590 0.1021 44 1 1.0590 8.3516 -1.1467 45 1 2.6023 4.2721 -0.3171 46 1 2.1418 1.9112 -0.8127 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281021581.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:46:32 Heat of formation + Delta-G solvation = 67.306772 kcal Electronic energy + Delta-G solvation = -26141.156017 eV Core-core repulsion = 22612.185078 eV Total energy + Delta-G solvation = -3528.970939 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.30349 -40.00499 -37.57634 -37.14199 -34.71786 -34.05730 -33.11492 -32.38186 -31.71047 -29.96472 -28.28956 -27.17576 -26.32221 -24.51059 -23.46165 -22.61789 -21.67597 -20.78452 -19.82994 -18.65678 -18.15583 -17.96496 -16.99293 -16.68592 -16.15222 -16.05803 -15.88702 -15.45032 -15.31736 -14.97700 -14.84999 -14.48419 -14.38264 -14.08308 -13.88450 -13.70998 -13.61305 -13.32383 -13.12188 -12.87811 -12.73819 -12.64496 -12.54255 -12.44470 -12.16173 -12.10839 -11.90177 -11.59184 -11.43076 -11.17900 -11.02134 -10.68099 -10.55344 -10.27505 -10.03754 -9.78249 -8.46381 -8.16763 -5.81003 0.31803 0.52285 1.35204 1.40916 1.50243 1.97299 2.16065 2.19076 2.33272 2.39073 2.83152 2.99654 3.35355 3.86267 3.93492 3.96819 4.06097 4.11375 4.15042 4.22770 4.43450 4.46314 4.47811 4.52078 4.57278 4.64065 4.67434 4.77077 4.80723 4.97580 4.98118 5.00232 5.02299 5.15093 5.24399 5.28247 5.31990 5.36641 5.41068 5.45043 5.45431 5.49908 5.68383 5.83630 6.05913 6.42857 6.45198 6.57868 7.12715 7.17905 7.41134 8.01980 8.51284 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.017859 B = 0.003537 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.490993 B = 7913.594243 C = 8805.359553 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.144 4.144 3 C 0.208 3.792 4 N -0.440 5.440 5 C -0.378 4.378 6 H 0.072 0.928 7 C 0.026 3.974 8 N -0.837 5.837 9 Si 0.967 3.033 10 H -0.275 1.275 11 H -0.266 1.266 12 H -0.276 1.276 13 C 0.473 3.527 14 O -0.640 6.640 15 C -0.190 4.190 16 C -0.036 4.036 17 C -0.198 4.198 18 C 0.236 3.764 19 N -0.619 5.619 20 C 0.112 3.888 21 C -0.168 4.168 22 C 0.117 3.883 23 C -0.139 4.139 24 C -0.148 4.148 25 C -0.199 4.199 26 C -0.064 4.064 27 H 0.234 0.766 28 H 0.081 0.919 29 H 0.116 0.884 30 H 0.277 0.723 31 H 0.114 0.886 32 H 0.149 0.851 33 H 0.094 0.906 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.058 0.942 37 H 0.042 0.958 38 H 0.075 0.925 39 H 0.094 0.906 40 H 0.065 0.935 41 H 0.047 0.953 42 H 0.055 0.945 43 H 0.067 0.933 44 H 0.055 0.945 45 H 0.146 0.854 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.132 22.793 4.926 23.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C -0.146 4.146 3 C 0.087 3.913 4 N -0.156 5.156 5 C -0.505 4.505 6 H 0.090 0.910 7 C -0.182 4.182 8 N -0.470 5.470 9 Si 0.790 3.210 10 H -0.201 1.201 11 H -0.190 1.190 12 H -0.201 1.201 13 C 0.265 3.735 14 O -0.530 6.530 15 C -0.195 4.195 16 C -0.056 4.056 17 C -0.220 4.220 18 C 0.132 3.868 19 N -0.327 5.327 20 C -0.011 4.011 21 C -0.226 4.226 22 C -0.005 4.005 23 C -0.178 4.178 24 C -0.205 4.205 25 C -0.221 4.221 26 C -0.084 4.084 27 H 0.251 0.749 28 H 0.098 0.902 29 H 0.133 0.867 30 H 0.087 0.913 31 H 0.133 0.867 32 H 0.166 0.834 33 H 0.112 0.888 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.077 0.923 37 H 0.061 0.939 38 H 0.093 0.907 39 H 0.113 0.887 40 H 0.084 0.916 41 H 0.065 0.935 42 H 0.074 0.926 43 H 0.086 0.914 44 H 0.075 0.925 45 H 0.164 0.836 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 4.211 22.679 4.685 23.537 hybrid contribution -0.182 -1.680 -0.223 1.705 sum 4.029 20.999 4.462 21.842 Atomic orbital electron populations 1.25084 0.96244 1.04404 1.00552 1.23086 0.94619 0.96976 0.99889 1.19120 0.85172 0.99215 0.87782 1.43809 1.49057 1.07108 1.15603 1.19299 1.52705 0.81965 0.96487 0.90987 1.25859 0.94178 1.03202 0.94920 1.70348 1.24081 1.39405 1.13193 0.85437 0.79340 0.78161 0.78060 1.20062 1.19023 1.20139 1.18587 0.83352 0.87105 0.84438 1.90528 1.60461 1.76730 1.25309 1.19664 0.99280 0.92957 1.07612 1.20884 0.94540 0.94853 0.95365 1.20687 1.01936 0.93229 1.06162 1.17933 0.92499 0.84939 0.91466 1.46711 1.21108 1.06225 1.58679 1.21609 0.83161 0.98937 0.97353 1.22181 0.99074 1.01751 0.99618 1.21674 0.90341 0.95059 0.93437 1.21920 0.97560 0.99399 0.98963 1.21687 0.98676 0.99967 1.00215 1.20707 0.99037 0.94482 1.07873 1.21365 0.98180 0.94179 0.94627 0.74930 0.90155 0.86701 0.91253 0.86745 0.83353 0.88782 0.90596 0.90227 0.92322 0.93861 0.90680 0.88749 0.91617 0.93452 0.92564 0.91434 0.92539 0.83615 0.85587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -10.26 19.24 74.32 1.43 -8.83 16 2 C -0.14 -6.76 9.63 31.13 0.30 -6.46 16 3 C 0.21 9.97 4.80 84.57 0.41 10.38 16 4 N -0.44 -24.52 2.68 -649.15 -1.74 -26.26 16 5 C -0.38 -22.78 9.09 84.09 0.76 -22.01 16 6 H 0.07 4.73 7.43 -2.91 -0.02 4.71 16 7 C 0.03 1.41 5.01 84.94 0.43 1.84 16 8 N -0.84 -43.92 9.03 21.67 0.20 -43.72 16 9 Si 0.97 43.28 29.68 68.60 2.04 45.32 16 10 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 11 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 12 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 13 C 0.47 26.13 7.29 86.66 0.63 26.76 16 14 O -0.64 -40.34 16.53 -4.14 -0.07 -40.41 16 15 C -0.19 -8.28 5.40 -20.08 -0.11 -8.39 16 16 C -0.04 -1.36 9.62 22.51 0.22 -1.15 16 17 C -0.20 -5.61 9.18 22.35 0.21 -5.41 16 18 C 0.24 6.10 6.55 38.47 0.25 6.35 16 19 N -0.62 -11.21 2.59 -697.25 -1.81 -13.02 16 20 C 0.11 1.49 5.86 86.38 0.51 2.00 16 21 C -0.17 -2.11 10.24 71.98 0.74 -1.37 16 22 C 0.12 1.65 5.15 86.38 0.45 2.09 16 23 C -0.14 -1.94 6.26 30.59 0.19 -1.75 16 24 C -0.15 -1.63 9.91 71.98 0.71 -0.92 16 25 C -0.20 -5.69 9.18 22.36 0.21 -5.49 16 26 C -0.06 -2.37 7.33 22.51 0.16 -2.21 16 27 H 0.23 7.60 7.80 -4.42 -0.03 7.56 16 28 H 0.08 4.02 6.59 -2.39 -0.02 4.00 16 29 H 0.12 4.81 3.79 -2.39 -0.01 4.80 16 30 H 0.28 13.54 8.31 -92.71 -0.77 12.77 16 31 H 0.11 4.41 8.05 -2.91 -0.02 4.39 16 32 H 0.15 3.31 6.11 -2.91 -0.02 3.29 16 33 H 0.09 0.87 8.07 -2.38 -0.02 0.85 16 34 H 0.08 1.06 6.17 -2.38 -0.01 1.05 16 35 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.07 1.13 6.16 -2.38 -0.01 1.11 16 39 H 0.09 0.94 8.07 -2.39 -0.02 0.92 16 40 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 42 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 44 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 45 H 0.15 3.39 6.10 -2.91 -0.02 3.37 16 46 H 0.13 4.90 4.65 -2.91 -0.01 4.89 16 Total: -1.00 -74.16 374.01 7.08 -67.08 By element: Atomic # 1 Polarization: 24.61 SS G_CDS: 0.97 Total: 25.58 kcal Atomic # 6 Polarization: -22.06 SS G_CDS: 7.49 Total: -14.58 kcal Atomic # 7 Polarization: -79.65 SS G_CDS: -3.35 Total: -82.99 kcal Atomic # 8 Polarization: -40.34 SS G_CDS: -0.07 Total: -40.41 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.04 Total: 45.32 kcal Total: -74.16 7.08 -67.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281021581.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.385 kcal (2) G-P(sol) polarization free energy of solvation -74.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds